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github.com/ome/omero-cli-transfer
An OMERO CLI plugin for creating transfer packets between OMERO servers.
https://github.com/ome/omero-cli-transfer
4f1940919df376a70a4d065868fd5a70cbed22e3 authored 11 months ago by Erick Martins Ratamero <[email protected]>
40ee7a7c5458e980638ca5800f1df3a0c4ef59d8 authored 11 months ago by Erick Martins Ratamero <[email protected]>
* schemas!
* better schemas!
* starting to move towards XML annotations
* creating XML ...
e8fc2809628fecb98c369145b1f382637b60d9e9 authored 11 months ago by Erick Martins Ratamero <[email protected]>* adds a --server option to pack
* removed black autoformatting
* fix too many blank lines...
97cf7efc718cf58c1e16d53f0d408344f78daa94 authored 11 months ago by Guillaume Gay <[email protected]>* bump actions/checkout to v4
* use branch
* remove local copy of files from omero-test-in...
009504b7874c6125f01fdb0310ff7bae9d04710f authored 12 months ago by jean-marie burel <[email protected]>* added plugin interface for pack
* added usage instructions for plugins to readme and added ...
760b7893877563435adf0d0fe2fcd407a559395d authored about 1 year ago by Christoph Moehl <[email protected]>3a1c056fa11048afeb513630bc318b73924e1ca6 authored about 1 year ago by Kiya Govek <[email protected]>
* help text for figure pack/unpack
* added arguments
* stub `populate_figures`
* grabbi...
1f3e8c34802b17ac059a5c5ae98af025fb32ff99 authored about 1 year ago by Erick Martins Ratamero <[email protected]>* scaffold for simple pack
* simple test case working
* new tests, all passing
* improv...
baeb5094430820bf8b0baa499a8faee70e026b09 authored over 1 year ago by Erick Martins Ratamero <[email protected]>64e6d9f5b0e081ada14426b43850125992bbe590 authored over 1 year ago by Erick Martins Ratamero <[email protected]>
c78060043d39ef7adfcac8e79d896649a6f31381 authored over 1 year ago by Erick Martins Ratamero <[email protected]>
* using relative paths for `--filelist` as well
* tests passing
e033ac2e40d9cef0a5b777cd56b6b9016eb8eaaa authored over 1 year ago by Erick Martins Ratamero <[email protected]>a13e385f079f8c664f4f9e647275a2d7c4706667 authored over 1 year ago by Erick Martins Ratamero <[email protected]>
* Fix typo in README.md (forge not force)
* fix conda install version specification
3ba94d0d5140937d62ca8dcc4f138dbc91479a18 authored over 1 year ago by Peter Sobolewski <[email protected]>* bump to new ome-types
* updating things for ome_types=0.4.0
* first try at merge project...
581996c21e3591c866759adaffa60284908167a3 authored over 1 year ago by Erick Martins Ratamero <[email protected]>2f3c319d12e5176786fdaa7acf68e8ff3be803f9 authored over 1 year ago by Erick Martins Ratamero <[email protected]>
* added filelist argument
* generating targets from filelist when necessary
* putting init...
b3b89495d17d894440fe34e7cfdf6df00f5168ec authored over 1 year ago by Erick Martins Ratamero <[email protected]>788222faf26cd590277441b67d6d0c8650fb5972 authored over 1 year ago by Erick Martins Ratamero <[email protected]>
0983eb9b4ebf047edb8dba268392b5dfe4ea7d56 authored over 1 year ago by Erick Martins Ratamero <[email protected]>
* added help for `omero transfer prepare`
* hooked command into `prepare` function
* next ...
fdcfbaa2f6a4e8a65b52f575a1113f347a66e77f authored over 1 year ago by Erick Martins Ratamero <[email protected]>5780268076519846edc301f355c138a9602c3cf0 authored over 1 year ago by Erick Martins Ratamero <[email protected]>
a5930b047a391c7e9314ef46e38ba496a060f6cb authored over 1 year ago by Erick Martins Ratamero <[email protected]>
92d4d67e9716ca8ccaa3fd11e3db94d8aedc1cc8 authored over 1 year ago by jean-marie burel <[email protected]>
licensing update
ac81c1fa9340af81cec4f4d62813d61980090fb1 authored over 1 year ago by jean-marie burel <[email protected]>99760b22218d5a1543ebc55e287e886fae9ac61a authored over 1 year ago by Erick Martins Ratamero <[email protected]>
617113566e5166d72b7a179d2079ff19b45e8a04 authored over 1 year ago by jean-marie burel <[email protected]>
Moved the "upload to PyPI" GH action to be in line with other OME releases, using a dedicated GH...
3e079f05a7713ad22cc45d39c07667f211f7de0d authored almost 2 years ago by jean-marie burel <[email protected]>875d2f871c0bf5253377a22e338c71fe1649dbef authored almost 2 years ago by Jean-Marie Burel <[email protected]>
4e0372ba55fe2f18c4dae521f015492f4a3aea71 authored almost 2 years ago by Jean-Marie Burel <[email protected]>
* assume fully opaque for `fillColor` without alpha
* skeleton for ro-crate support
* rocr...
9e27ab9fe7bdebade81cbdb57f72b062f4bb1ccc authored almost 2 years ago by Erick Martins Ratamero <[email protected]>dd9a736d45d1ad866a0aaa0f613f679bf30e89e7 authored almost 2 years ago by Erick Martins Ratamero <[email protected]>
* passing colors/width correctly
* removing debug print
* added provenance metadata for pl...
7442abc0df6f53afaa231777e3a8a2fbc2039ef1 authored almost 2 years ago by Erick Martins Ratamero <[email protected]>* new `test_pack_unpack` test
* plate/screen tests still failing
* all tests passing but p...
8b021b55e2646f038c4199972f5aaf52e22fdd0e authored almost 2 years ago by Erick Martins Ratamero <[email protected]>* fixed tests, using non-deprecated zeroc-ice for testing, solved #32
* generate_omero_object...
dd6936318a2d322c16b62b26c6eb2c39f4dee307 authored about 2 years ago by Erick Martins Ratamero <[email protected]>9ad9a4b653034ea977954dc5820bed09517d462f authored over 2 years ago by Will Moore <[email protected]>
* added `--metadata` argument
* passing metadata to the right place
* metadata argument be...
2d979ad5a25fd9380d4996e7b6a328e49bf5a2f9 authored over 2 years ago by Erick Martins Ratamero <[email protected]>c34be8afb9c95a13a3b29051fa00a5ed41103d2f authored over 2 years ago by Erick Martins Ratamero <[email protected]>
* fixes imports that autogenerate annotations
* flake8 pass
d1d3d983881f721039f6b9dbad9d5bd0811af6cb authored over 2 years ago by Erick Martins Ratamero <[email protected]>* fixed md5 hashing to not read whole file in memory
* failed imports do not leave data orphaned
5aefdf8c7bda81ad4a9701f4cad01e54b7b80118 authored over 2 years ago by Erick Martins Ratamero <[email protected]>* starting work to generate tsv
* zip file generated with image files in the right places
...
20fd1e25e0130f3c078f6366dc20b8f01406e4f9 authored over 2 years ago by Erick Martins Ratamero <[email protected]>* packing/unpacking tar, unpack zip without OOM
* added possibility to pass a folder to unpack
f211f94f944e3da22313cc588e58c2d26c139179 authored over 2 years ago by Erick Martins Ratamero <[email protected]>* extra tests
* edited readme, added test for no-file images
* added plate and screen test...
9858d9122e30b334a2dba35ddd278f77c88db73d authored over 2 years ago by Erick Martins Ratamero <[email protected]>35e34aec73381a382aa26ee86026196e8e154146 authored almost 3 years ago by Erick Martins Ratamero <[email protected]>
2c378d6e378f445bd8df285c81d953f60baa5e35 authored almost 3 years ago by Erick Martins Ratamero <[email protected]>
* first try at packing plates/screens
* making sure we are not repeatedly trying to download ...
29310e73decfc07429cc7e424895ca49ccf3d657 authored almost 3 years ago by Erick Martins Ratamero <[email protected]>* minimal working commit for commentannotations
* LongAnnotations! (i.e. ratings!!!)
* Fil...
4ea501fffdee176d215a20412d85c3102d2a110d authored almost 3 years ago by Erick Martins Ratamero <[email protected]>* enforce all images in a fileset to be in the XML
* only getting destination IDs without Map...
527ef210becf1aed5bd4fdfc4ae8570a53bc309b authored almost 3 years ago by Erick Martins Ratamero <[email protected]>Using the new ROI types from ezomero 1.0.1 (Polyline, Label) and adding markerStart and markerEn...
7bc5594c2bebb836846db3664e20a682b83c671b authored almost 3 years ago by Erick Martins Ratamero <[email protected]>If an `Image` ID has multiple file paths on the server, indicating that the import required mult...
75df3a71dd9cb8048a3b16e95d574251d7986029 authored almost 3 years ago by Erick Martins Ratamero <[email protected]>9db2fd3b71a67aa45b143c813bee11f93b407482 authored almost 3 years ago by Erick Martins Ratamero <[email protected]>
* testing hostname passing
* hostname should be correctly parsed now
* ..and now as a stri...
d09a2ab9dfa9a9f93bc86cba8d2d7977ebe798e0 authored almost 3 years ago by Erick Martins Ratamero <[email protected]>* testing omero_plugin.yml
* pinning requirements
* flake8 pass
* added local testing i...
5fec969b26bc959c01a8c77fa210008ea30fdbe0 authored almost 3 years ago by Erick Martins Ratamero <[email protected]>a9ed6e559f6926e609df750e2839f71135cc4f32 authored almost 3 years ago by Erick Martins Ratamero <[email protected]>
d1c6c360f73af3daf0f3fec4c8e15aa1d7ae81ab authored almost 3 years ago by Erick Martins Ratamero <[email protected]>
b6b168991740666569bbba3a07eecc06bfa9209f authored almost 3 years ago by Erick Martins Ratamero <[email protected]>
547f0a00a699a49a35dad7bc841082dbb6d5f6e2 authored almost 3 years ago by Erick Martins Ratamero <[email protected]>
c4d32e4420af4e7a793ef407eaee3b0f23aadf06 authored almost 3 years ago by Erick Martins Ratamero <[email protected]>
d595ab3ad5951db5e11ff858cf7c2875d7b880c2 authored almost 3 years ago by Erick Martins Ratamero <[email protected]>