github.com/OpenMS/OpenMS issues | Ecosyste.ms: OpenCollective

Create OMSPrerequisities.xml

timosachsenberg opened this pull request almost 2 years ago

TOPPView is not opening on macOS 12.6 (M1 Pro cpu)

lfnothias opened this issue almost 2 years ago

initial support for export of peak annotations

timosachsenberg opened this pull request almost 2 years ago

Comet has trouble searching converted IM data

timosachsenberg opened this issue about 2 years ago

Release Checklist for 3.0

poshul opened this issue about 2 years ago

Update to Qt6

jpfeuffer opened this issue over 2 years ago

Split KNIME plugin into OpenMS and Thirdparty

jpfeuffer opened this issue over 2 years ago

make spectrum and areaiterator const only

timosachsenberg opened this pull request over 2 years ago

Check KNIME 4.6 compatibility

timosachsenberg opened this issue over 2 years ago

Pyopenms not installable on new Macs with M1 chip

zmunro opened this issue over 2 years ago

Convert iterator for loops

timosachsenberg opened this issue over 2 years ago

Patch/use tdl new take

SGSSGene opened this pull request over 2 years ago

Update CommonEnums.cpp

timosachsenberg opened this pull request over 2 years ago

MSFragger versions supported by MSFraggerAdapter

zhuchcn opened this issue over 2 years ago

added WizardHelper class to be shared with other Wizards

JeeH-K opened this pull request over 2 years ago

SiriusAdapter issue (sirius invocation failed)

eeko-kon opened this issue over 2 years ago

Use new ID data structures in FeatureFinderIdentification (and ProteomicsLFQ)

hendrikweisser opened this pull request over 2 years ago

Feature id promotion

poshul opened this pull request over 2 years ago

Deprecated (doxygen) Doc pages notice does not work

jpfeuffer opened this issue over 2 years ago

Feature/isotope class

hroest opened this pull request over 2 years ago

[FEATURE] TSG option to add internal ions

timosachsenberg opened this pull request over 2 years ago

Installer packages too large

jpfeuffer opened this issue over 2 years ago

Combine PSMFeatureExtractor and Percolator in PercolatorAdapter

jpfeuffer opened this issue over 2 years ago

[FEATURE] prepare for ion mobility support in FFCentroid

hroest opened this pull request over 2 years ago

[BUILD] Try to silence NPY Deprecated warnings in pyopenms

jpfeuffer opened this pull request almost 3 years ago

How to create MassTrace objects with pyopenms

jtprince opened this issue almost 3 years ago

pass calling process environment to children

timosachsenberg opened this pull request almost 3 years ago

FLASHIda

JeeH-K opened this pull request almost 3 years ago

Added new features in SpectraMerger

JeeH-K opened this pull request almost 3 years ago

PeakPickerHiRes fails with leading flank peaks

hroest opened this issue almost 3 years ago

Clang tidy performance type-promotion-in-math-fn,move-const-arg,unnecessary-copy-initialization

timosachsenberg opened this pull request almost 3 years ago

Wrapping new IdentificationData in pyopenms

timosachsenberg opened this issue almost 3 years ago

Patch/use td library

SGSSGene opened this pull request almost 3 years ago

PeakTypeEstimator fails for timsTOF profile data

hroest opened this issue almost 3 years ago

Add MZMLb support

poshul opened this issue almost 3 years ago

How to extract DIA MS2 consensus features for ClusterMassTraces

yyi17 opened this issue almost 3 years ago

Pyopenms actions. Mismatch between building and testing versions

jpfeuffer opened this issue almost 3 years ago

Add some std::moves to SpectrumMerger

jpfeuffer opened this issue almost 3 years ago

ConsensusID failure because MS run path not interpreted from MSFragger idXML

zhuchcn opened this issue almost 3 years ago

Split up OpenMS library

hroest opened this pull request almost 3 years ago

Linux dependency missing for KNIME nodes 2.7.0

julianu opened this issue about 3 years ago

validate experimental design

timosachsenberg opened this pull request about 3 years ago

libicu has no rpath (anymore?) on linux

jpfeuffer opened this issue over 3 years ago

[Feature] AccurateMassSearch sqlite support

jpfeuffer opened this pull request over 3 years ago

add internal ions and n terminal losses

timosachsenberg opened this pull request over 3 years ago

ID score switcher error

Maithy15 opened this issue over 3 years ago

fixed some AddressSanitizer errors (mainly for demonstration purposes)

timosachsenberg opened this pull request over 3 years ago

Update Docs + Readme + Website with new C std and min. compilers

jpfeuffer opened this issue over 3 years ago

OpenSwathWorkflow crashes

sjr24 opened this issue over 3 years ago

Update Comet and support all our enzymes

jpfeuffer opened this issue over 3 years ago

Release automation

jpfeuffer opened this issue about 4 years ago

[FEATURE] added CV terms for spectral counting / label-free abundances

timosachsenberg opened this pull request about 4 years ago

Ion mobility support in OpenMS

hroest opened this issue about 4 years ago

Error Reporting in DataValue.cpp

ekawaler opened this issue about 4 years ago

MzTab for TMT

jpfeuffer opened this issue about 4 years ago

[Feature] Include calculation of QC parameters in ProteomicsLFQ tool

jpfeuffer opened this pull request over 4 years ago

Build pyOpenMS with static QT to avoid version mismatches with e.g. Spyder/pyQT (especially on Win)

timosachsenberg opened this issue about 5 years ago

SpectraST unix binary problem

Leon-Bichmann opened this issue about 5 years ago

OpenMS assumes strict hierarchy of MS levels in mzML?

jpfeuffer opened this issue about 5 years ago

Update Comet version and auto-determine version

jpfeuffer opened this issue over 5 years ago

Bioconda thirdparty packages

Leon-Bichmann opened this issue almost 6 years ago

how to download the example file in http://www.peptideatlas.org/PASS/PASS00779

mantouRobot opened this issue about 6 years ago

XML Reader performance

hroest opened this issue over 6 years ago

Use dynamic contrib libraries as default?

hroest opened this issue over 6 years ago

[REVIEW] Consistent search engine adapter interfaces

jpfeuffer opened this issue over 6 years ago

MetaProSIP Report inconsistent value for low RIA peptides?

timosachsenberg opened this issue about 7 years ago

Fast base64 encoding

hroest opened this issue over 7 years ago

Invalid mzIdentML created from idXML with missing proteins

hendrikweisser opened this issue over 7 years ago

Error handling spaces in paths in the course of a workflow

jpfeuffer opened this issue over 7 years ago

MSGFPlusAdapter - self-defined mods not passed on to the search result

lars20070 opened this issue over 8 years ago

FileInfo: memory usage reported correctly?

hendrikweisser opened this issue over 9 years ago

enable ubsan

hroest opened this issue about 10 years ago

EGHTraceFitter sigma bug

WMGoBuffs opened this issue about 10 years ago

Show precursor charge in Scan View panel

lars20070 opened this issue about 10 years ago

MyriMatch adapter - N-terminal modifications

hendrikweisser opened this issue over 10 years ago

Create image of workflow (and include it in repository) [627]