github.com/OpenMS/OpenMS issues | Ecosyste.ms: OpenCollective

remove tool also from KNIME packaging

timosachsenberg opened this pull request over 1 year ago

[Feature] IDPEP p-values

jpfeuffer opened this pull request over 1 year ago

Get rid of dependency on C compilers

jpfeuffer opened this pull request over 1 year ago

[discussion] remove utils and model as topp tool with utilities category

timosachsenberg opened this pull request over 1 year ago

SiriusAdapter fails in OpenMS 3.0

bernt-matthias opened this issue over 1 year ago

[cleanup] remove CompNovo

timosachsenberg opened this pull request over 1 year ago

[Cleanup] Remove some of the eval tools

timosachsenberg opened this pull request over 1 year ago

[Cleanup] Remove PepNovoAdapter

timosachsenberg opened this pull request over 1 year ago

Bump src/pyOpenMS/pyopenms-docs from `04c8016` to `0d5e4f3`

dependabot[bot] opened this pull request over 1 year ago

port FullMultijob to Github actions

poshul opened this issue over 1 year ago

Port release jenkins job to github actions

poshul opened this issue over 1 year ago

Bump THIRDPARTY from `0dda83f` to `402992f`

dependabot[bot] opened this pull request over 1 year ago

Bump src/pyOpenMS/pyopenms-docs from `04c8016` to `15accd0`

dependabot[bot] opened this pull request over 1 year ago

MapAlignerPoseClustering log filenames during aligment

axelwalter opened this pull request over 1 year ago

Remove_oldsvm

timosachsenberg opened this pull request over 1 year ago

Nightly conda failing or version wrong

jpfeuffer opened this issue over 1 year ago

TOPPAS: better button text to avoid confusion with loading data files

cbielow opened this pull request over 1 year ago

pyopenms_test_memoryleaktests failed

sagitter opened this issue over 1 year ago

Link to toppas tutorial not working

jpfeuffer opened this issue over 1 year ago

update pxds for cython 3 compatibility

timosachsenberg opened this pull request over 1 year ago

Update CHANGELOG

poshul opened this pull request over 1 year ago

Bump src/pyOpenMS/pyopenms-docs from `577aca4` to `04c8016`

dependabot[bot] opened this pull request over 1 year ago

Cython 3

jpfeuffer opened this issue over 1 year ago

Fix link in pyopenms package description

radusuciu opened this pull request over 1 year ago

Add some project urls to pyopenms package

radusuciu opened this pull request over 1 year ago

Use logger for pyopenms warnings/errors

radusuciu opened this pull request over 1 year ago

Base64 encoding/decoding using SIMDe

cbielow opened this pull request over 1 year ago

Deisotoper_test failed

sagitter opened this issue over 1 year ago

[CMAKE] detect coin-or in different places

jpfeuffer opened this pull request over 1 year ago

FindCoin.cmake: reverse logic of #6877, to allow pre-configured OpenMS source builds …

cbielow opened this pull request over 1 year ago

Clean up Licenses and Readmes

jpfeuffer opened this issue over 1 year ago

add suffix to package names on macOS for different archs

jpfeuffer opened this pull request over 1 year ago

MapRTTransformer does not change RT according to trafoXML

jonasscheid opened this issue over 1 year ago

Remaining Apple Silicon issues

jpfeuffer opened this issue over 1 year ago

Does the RNPxlsearch-Node support ETD or EThcD derived MS data?

Junzhimo opened this issue over 1 year ago

Start converting some jobs to jenkinsfiles

timosachsenberg opened this issue over 1 year ago

Add FLASH python tutorial

timosachsenberg opened this issue over 1 year ago

Revert "Update IsobaricQuantifier.cpp"

cbielow opened this pull request over 1 year ago

Update openms-ci.yml

timosachsenberg opened this pull request over 1 year ago

Bump src/pyOpenMS/pyopenms-docs from `577aca4` to `155f6c4`

dependabot[bot] opened this pull request over 1 year ago

[CLEANUP] Remove first set of unused tools

timosachsenberg opened this pull request over 1 year ago

Docs do not point to latest

jpfeuffer opened this issue over 1 year ago

Unify action trigger for container and wheels

jpfeuffer opened this pull request over 1 year ago

fixes failing tests on Mac Silicon

cbielow opened this pull request over 1 year ago

Numerical instability on Mac Silicon M1/M2

cbielow opened this issue over 1 year ago

Warnings during pypi publish in GH Action

jpfeuffer opened this issue over 1 year ago

Merge back Release/3.0.0

jpfeuffer opened this pull request over 1 year ago

Revert "Pytorch"

timosachsenberg opened this pull request over 1 year ago

Bump THIRDPARTY from `e215209` to `0dda83f`

dependabot[bot] opened this pull request over 1 year ago

3.2.0 release planning

mr-c opened this issue over 1 year ago

Error of IDMapper

Yang9429 opened this issue over 1 year ago

SimpleSVM test speedup

timosachsenberg opened this pull request over 1 year ago

fix: json reader entries for output files, should be strings

SGSSGene opened this pull request over 1 year ago

update release branch

timosachsenberg opened this pull request over 1 year ago

Release/3.0.0

timosachsenberg opened this pull request over 1 year ago

Update docs with warning in FloatDataArray.pyx

jpfeuffer opened this pull request over 1 year ago

sync with develop

timosachsenberg opened this pull request over 1 year ago

GHA pyopenms builds failing due to cmake version

jpfeuffer opened this issue over 1 year ago

File_test files always present?

jpfeuffer opened this issue over 1 year ago

update Release3.0.0

cbielow opened this pull request over 1 year ago

Add on-the-fly conversion of mzml to numpy array in pyopenms?

jpfeuffer opened this issue over 1 year ago

feat: :sparkles: Added ion mobility possibility for dataframe

PierreSnell opened this pull request over 1 year ago

update from latest develop

cbielow opened this pull request over 1 year ago

Create pyOpenMS wrapper for FLASHDeconv

timosachsenberg opened this issue over 1 year ago

update mascot test

timosachsenberg opened this pull request over 1 year ago

MascotAdapterOnline tests fail

timosachsenberg opened this issue over 1 year ago

Remove pdf tutorial from targets

poshul opened this pull request over 1 year ago

fix minimal cmake version

cbielow opened this pull request over 1 year ago

get rid of the pdf tutorial

poshul opened this issue over 1 year ago

Update refman_overwrite.tex.in

poshul opened this pull request over 1 year ago

RSD < 0 should throw error

poshul opened this issue over 1 year ago

Cmake 3.24 not available on Ubuntu LTS

poshul opened this issue over 1 year ago

update release RC from develop

cbielow opened this pull request over 1 year ago

also update LICENSE.md

cbielow opened this pull request over 1 year ago

Support external libs

cbielow opened this pull request over 1 year ago

Works around issue in apple silicon

poshul opened this pull request over 1 year ago

[ByGitAction] Updated year number in the header of files

github-actions[bot] opened this pull request over 1 year ago

Update update_year_number.yml

timosachsenberg opened this pull request over 1 year ago

Update update_year_number.yml

timosachsenberg opened this pull request over 1 year ago

Error: could not open sqlite db

Tlicknack opened this issue over 1 year ago

Allow linking to an existing sqlitecpp and nlohmann-json

jpfeuffer opened this issue over 1 year ago

Update update_year_number.yml

timosachsenberg opened this pull request over 1 year ago

ignore Cython warnings for py 3.8

jpfeuffer opened this pull request over 1 year ago

Fix license year (2023)

cbielow opened this pull request over 1 year ago

Floating point issues on apple silicon

poshul opened this issue over 1 year ago

remove unicode character from description in MSFraggerAdapter.cpp

timosachsenberg opened this pull request over 1 year ago

Update MRMTransitionGroupPicker.h

poshul opened this pull request over 1 year ago

IsobaricAnalyzer removes all HCD spectra instead of keeping them

glormph opened this issue over 1 year ago

Update IsobaricQuantifier.cpp

poshul opened this pull request over 1 year ago

ProteomicsLFQ normalization

JustinGibbons opened this issue over 1 year ago

Bump src/pyOpenMS/pyopenms-docs from `8c1f161` to `577aca4`

dependabot[bot] opened this pull request over 1 year ago

update release branch with latest changes

cbielow opened this pull request over 1 year ago

Fix slow string conversion

cbielow opened this pull request over 1 year ago

fix bogus icon message on Linux (where we do not embed icons)

cbielow opened this pull request over 1 year ago

Update pyoms Jenkinsfile such that it checks out into a local branch with the same name

jpfeuffer opened this pull request over 1 year ago

RNPXl Warnings

jpfeuffer opened this issue over 1 year ago

some comments / documentation

timosachsenberg opened this pull request over 1 year ago

Pyopenms jenkinsfile (for macOS silicon)

jpfeuffer opened this pull request over 1 year ago

[fix][pyopenms] adhoc sign libs that are copied into wheel

jpfeuffer opened this pull request over 1 year ago

Building pyopenms 3.0.0.dev wheel for M1 Pro

lfnothias opened this issue over 1 year ago