Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/OpenMS

The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS

Merge pull request #7377 from OpenMS/timosachsenberg-patch-1

attempt to install eigen from chocolatey

f7db2cf380a5fbd29958321a4fe1e90750078296 authored 8 months ago by Timo Sachsenberg <[email protected]>
Update openms_ci_matrix_full.yml

c5ce169da553d72fcbbb371d50e9bc0cc3dbeb39 authored 8 months ago by Timo Sachsenberg <[email protected]>
attempt to install eigen from chocolatey

66042b3bbdd8b4053c9023ba75238733af24386e authored 8 months ago by Timo Sachsenberg <[email protected]>
Merge pull request #7371 from OpenMS/dependabot/submodules/contrib-5545518

Bump contrib from `04d64c6` to `5545518`

50721ed4dd8241c06f00a7e34f3138326c70503a authored 8 months ago by Timo Sachsenberg <[email protected]>
Merge pull request #7376 from OpenMS/timosachsenberg-patch-1

Update MatrixUtils.h with correct(?) eigen include path

332d548f8065d5b260baab653c6ea7384178e36b authored 8 months ago by Timo Sachsenberg <[email protected]>
check if CI caching is involved...

4f33fa521a0df4a11329b36067be99fa9621f535 authored 8 months ago by Timo Sachsenberg <[email protected]>
Update MatrixUtils.h

59ffed315c2ee3799d1f34defe2e83da63d08a44 authored 8 months ago by Timo Sachsenberg <[email protected]>
Bump contrib from `04d64c6` to `5545518`

Bumps [contrib](https://github.com/OpenMS/contrib) from `04d64c6` to `5545518`.
- [Commits](http...

02019d3f938d33367c4ac4c067e4ea449b590909 authored 8 months ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Merge pull request #7210 from OpenMS/release/2.9.1-action

Release action

26b6bfa84993a9db05f131a809a42b70cbb49c8c authored 8 months ago by Julianus Pfeuffer <[email protected]>
remove DO NOT MERGE from release PR text.

5f20c8c559634161a0c82751fe9687286b663c4f authored 8 months ago by Samuel Wein <[email protected]>
allow trailing text in release versions

b5775aca2640ef7b6ffd623a36c89f07558f7905 authored 8 months ago by Samuel Wein <[email protected]>
update knime version to 5.2

611911cf07a119a92e0fd0e7df41ca89f60d226d authored 8 months ago by Samuel Wein <[email protected]>
Merge branch 'develop' into release/2.9.1-action

297c1793a2f0bc56ade55a97d5dbd32280e1b206 authored 8 months ago by Samuel Wein <[email protected]>
Merge pull request #7354 from cbielow/more_doc

[DOC] update C++ developer tutorials {part1)

ec467516de3e0e75d132d8f8f3348bac939cf4cd authored 8 months ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into release/2.9.1-action

99cb6baa02e33332fd97164d8fe3844e0ccf0cd3 authored 8 months ago by Samuel Wein <[email protected]>
redirect the upload paths to where they should live post-testing

3dc1af474148713a8536396756d95d866ef57a00 authored 8 months ago by Samuel Wein <[email protected]>
fix doxygen formatting issue

82c523a5f397a0304ca9213b0dbf7cae437ab9f6 authored 8 months ago by Chris Bielow <[email protected]>
fixed links for latest

eacc9169aacf216e58294f5f98d997c097af9008 authored 8 months ago by Samuel Wein <[email protected]>
fix paths and variables for uploading.

cbfa72e0eea35a25966854d23d9f3e1b345adfb4 authored 8 months ago by Samuel Wein <[email protected]>
fixed evaluation of nightly status for where to upload

7941ae476b2e9901ee6bdeff23a9eaf02b6d9b7e authored 8 months ago by Samuel Wein <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into more_doc

4f538f8b670dccac490a1d0692837688de66b937 authored 8 months ago by Chris Bielow <[email protected]>
Merge branch 'more_doc' of https://github.com/cbielow/OpenMS into more_doc

a48194de232e2371474bba8592b92f6f8adeb710 authored 8 months ago by Chris Bielow <[email protected]>
fix typo

089007c36523594bc6f24edd200f8bd8a2423a1b authored 8 months ago by Chris Bielow <[email protected]>
we used env.run_name in a lot of places where we should have used github.ref_name, they are the same when run automatically, but not when run manually

eb08cd5a4553491f903cab5efeebbab3d30b3390 authored 8 months ago by Samuel Wein <[email protected]>
Update src/openms/include/OpenMS/DATASTRUCTURES/DistanceMatrix.h

9261109b740d559ba5157bce1cef1a194bc02b33 authored 8 months ago by Timo Sachsenberg <[email protected]>
fix base64 wrapping

992217671de087c7e99a0700f8d3346d023ba18e authored 8 months ago by Samuel Wein <[email protected]>
base64 encode relesae announcement so it doesn't get mangled

da1f58334530977a03ac5028602b5b1d6e79c3fb authored 8 months ago by Samuel Wein <[email protected]>
SiriusAdapter replaced with SiriusExport and adaptations to AssayGeneratorMetabo (#7234)

* rework SiriusAdapter to SiriusExport

* AssayGeneratorMetabo rework
- does not execute SIRI...

7ffeae56012101ee77a37fb26a7dc7e11b84a26e authored 8 months ago by axelwalter <[email protected]>
Merge branch 'develop' into more_doc

ef2c1d26f640c955af806b84845ba1014703a1ac authored 8 months ago by Timo Sachsenberg <[email protected]>
Correct order to use token at checkout

381434fe015eada970ace71ffaca3b2352100b16 authored 8 months ago by Julianus Pfeuffer <[email protected]>
create token for website

04dcbf14a57ed2f026f2781fe864230fb4a63204 authored 8 months ago by Samuel Wein <[email protected]>
moved the website update to another job

712e8b8a9508a6f23e27f7dc81da88cf637c60b3 authored 8 months ago by Samuel Wein <[email protected]>
add user.email and user.name

ed888ad29793124bc9ca8bfe33e8153e0ecd10cf authored 8 months ago by Samuel Wein <[email protected]>
Merge branch 'release/2.9.1-action' of ssh://github.com/OpenMS/OpenMS into release/2.9.1-action

c9c131dcf8dfde223469128e5f51d6961b8065fe authored 8 months ago by Samuel Wein <[email protected]>
Merge remote-tracking branch 'upstream/develop' into release/2.9.1-action

20befdb16b3687d54420dc9fbda62d52f39ca1a6 authored 8 months ago by Samuel Wein <[email protected]>
Update openms_ci_matrix_full.yml

5dbdfa2dbcbb1e27102bcee5ee122370718fe501 authored 8 months ago by Samuel Wein <[email protected]>
Update openms_ci_matrix_full.yml

42ceb92371d5c33a587407ea98b2952068dd928b authored 8 months ago by Samuel Wein <[email protected]>
Update openms_ci_matrix_full.yml

If there was any documentation as to what directory exclusions were relative to it would make th...

7feb640da2dd5168bb561cb46fbace9c1092e427 authored 8 months ago by Samuel Wein <[email protected]>
Update openms_ci_matrix_full.yml

87299cf3202c4aff8aac5bf62f299f3299d42fae authored 8 months ago by Samuel Wein <[email protected]>
Update openms_ci_matrix_full.yml

4bd8c01487d330c66dbbfe3a3141628f0d412961 authored 8 months ago by Samuel Wein <[email protected]>
Merge pull request #7355 from OpenMS/jpfeuffer-patch-6

Add KNIME package support for macos arm

37b878b5b52a01dbf6a9502152ec6f7a65f12708 authored 8 months ago by Julianus Pfeuffer <[email protected]>
Merge pull request #7352 from OpenMS/nightly-testing

Update update_nightly.yml testing

7af995ffa4393b0f7642af85938ca3639d5c1217 authored 8 months ago by Julianus Pfeuffer <[email protected]>
Update openms_ci_matrix_full.yml

579940aff2700645a3bb3c3e6ee7be6c9735b61c authored 8 months ago by Samuel Wein <[email protected]>
Update openms_ci_matrix_full.yml

actually upload the artifact

7cc77a9536c8825721247fe6a99986e91e5ecbce authored 8 months ago by Samuel Wein <[email protected]>
Update openms_ci_matrix_full.yml

dd63213e630a24bef68e3e8b666f90e7deac0d7e authored 8 months ago by Samuel Wein <[email protected]>
fixed (hopefully)

9524bb9045ba9d28091fa1a9ffe5aa64bc586213 authored 8 months ago by Samuel Wein <[email protected]>
added creating a src archive and uploading it as part of the release

27c5ff2494b7c43809405aceab0cbd8f8b70e34b authored 8 months ago by Samuel Wein <[email protected]>
fix incorrectly escaped naming for upload artifact

7251f47136d6474926457159d1f983d6c16a108e authored 8 months ago by Samuel Wein <[email protected]>
tidy

dce3b52d249967d8308f5399596b9d2c9f2fc6a7 authored 8 months ago by Samuel Wein <[email protected]>
Merge remote-tracking branch 'upstream/develop' into release/2.9.1-action

eedced5ba2c7097f37022cce12e67b0208e53453 authored 8 months ago by Samuel Wein <[email protected]>
remove upload-url stuff

d638d894844c156f15c1d24e981a3b88f9292b88 authored 8 months ago by Samuel Wein <[email protected]>
Merge branch 'develop' into nightly-testing

b17f1932f0ecef24e5710e15d33ad25f5f1c4cea authored 8 months ago by Samuel Wein <[email protected]>
Merge pull request #7348 from OpenMS/jpfeuffer-patch-9

Add Apple Silicon support to CI

911269902ed29ea70bd1ccabf84a04f6f2c06a9f authored 8 months ago by Julianus Pfeuffer <[email protected]>
Add KNIME pacakge support for arm

988991f19b5c5da6f49cd52a02d036dfdb8388c9 authored 8 months ago by Julianus Pfeuffer <[email protected]>
[DOC] modernize first set of Tutorials; fix docs of affected classes along the way. also update raw input data (avoid parser warnings)

4be904ed50e814262b3a16a06c11675a98849b7f authored 8 months ago by Chris Bielow <[email protected]>
actually define outputs

fb75a43ef3569ac713e5445c0b79e6dbb869795c authored 8 months ago by Samuel Wein <[email protected]>
Update .github/workflows/update_nightly.yml

Co-authored-by: Timo Sachsenberg <[email protected]>

7736cb7a8b25ea4173f645eb539f53c34f259f44 authored 8 months ago by Samuel Wein <[email protected]>
Update openms_ci_matrix_full.yml

f94d899aa752b0d97cfcfda136608d1456cd8da0 authored 8 months ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into nightly-testing

0de1bcd2d261f6c3d1e07af912243ac8e8e6173c authored 8 months ago by Samuel Wein <[email protected]>
Update openms_ci_matrix_full.yml

536874b986a3fccda0937af431851d25db4ffc7c authored 8 months ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into jpfeuffer-patch-9

42d66d35408e23ea4b836161a1ba040a13cd0daa authored 8 months ago by Julianus Pfeuffer <[email protected]>
Update openms_ci_matrix_full.yml

6238414264e1e2ce46c2cea2fba71814f45f8323 authored 8 months ago by Julianus Pfeuffer <[email protected]>
Exclude some tests on mac for MRMAssay_test.cpp (#7349)

* Update MRMAssay_test.cpp

* add comments, fix logic

39575d2142d0f49098019c80dc6cfbfed9f76f76 authored 8 months ago by Timo Sachsenberg <[email protected]>
Update update_nightly.yml

4b5220d0c12cea2a7db40ad892c55c66980d6603 authored 8 months ago by Samuel Wein <[email protected]>
Update update_nightly.yml

aea1f1fdc71d2d38e813788a760c7f58ade5a8b5 authored 8 months ago by Samuel Wein <[email protected]>
Update update_nightly.yml

1ede9ac47fbfad1b880b4a53933375a781d82d13 authored 8 months ago by Samuel Wein <[email protected]>
Update update_nightly.yml

b5ad4a68f0c92da44d431659b56412f16cf13aba authored 8 months ago by Samuel Wein <[email protected]>
Update update_nightly.yml

8affedcaed27af5fbdc128c392a940ec3a03e7a6 authored 8 months ago by Samuel Wein <[email protected]>
Update update_nightly.yml

7dfa869ec52eab70575569595f577e9feb96bd4f authored 8 months ago by Samuel Wein <[email protected]>
Update update_nightly.yml

d8ea3ef057d1e4db17974cfb29982c690b7619fd authored 8 months ago by Samuel Wein <[email protected]>
Update update_nightly.yml

79ce76a64c60c3fb2b3dc2650fd39b70b0bc2507 authored 8 months ago by Samuel Wein <[email protected]>
Update update_nightly.yml

b0ab9c4f979c99d627ee61494e31c77d0f76e592 authored 8 months ago by Samuel Wein <[email protected]>
Try to incorporate to packaging

cb1b459b3f538aaa17d2b9663be351d462329f54 authored 8 months ago by Julianus Pfeuffer <[email protected]>
Update update_nightly.yml testing

fa7344d6b0d0b7fdc130cb5170b78bb11642c7bf authored 8 months ago by Samuel Wein <[email protected]>
Merge pull request #7350 from OpenMS/poshul-patch-1

Update update_nightly.yml

adb7c8d2b7ba4f73c8a1effd1d0a69efa373a227 authored 8 months ago by Samuel Wein <[email protected]>
Update update_nightly.yml

f513f351217c7ad39287a2c335c484ca90b72c76 authored 8 months ago by Samuel Wein <[email protected]>
Update openms_ci_matrix_full.yml

13ca79ab152154ec8a1f7a0ce0dcc84fd983043f authored 8 months ago by Julianus Pfeuffer <[email protected]>
Prefix path not working/not clear. Use qt_dir

0c68396df7b8d5cd5932514fcc70a9a3db85ee43 authored 8 months ago by Julianus Pfeuffer <[email protected]>
brew link is broken for qt https://github.com/Homebrew/homebrew-core/issues/8392

abb4cd8002ffbc5339526e6ad06b8560a10e0565 authored 8 months ago by Julianus Pfeuffer <[email protected]>
Link qt and set came prefix

1059d49ff112ee6e1988e52b6c30d9bc8fb490ed authored 8 months ago by Julianus Pfeuffer <[email protected]>
aqtinstall does not support M1/2/Universal

At least Not for qt5

e21422be06967ac5f4282273230a2e0a4ab2a8a5 authored 8 months ago by Julianus Pfeuffer <[email protected]>
Macos14 has new xcodr 15

cc8fde18730a2649bff981eca7d6a11e02be8313 authored 8 months ago by Julianus Pfeuffer <[email protected]>
Try macos-14 M1 in CI

147388b3a6b64bb548d634ffa8e06a85a8869e84 authored 8 months ago by Julianus Pfeuffer <[email protected]>
Merge pull request #7345 from OpenMS/timosachsenberg-patch-1

Use system libraries for contrib on Mac

c892bc83b412f79b9de73f590d43ef4abe512d5a authored 8 months ago by Timo Sachsenberg <[email protected]>
Update openms_ci_matrix_full.yml

90925192833c2946a9167eeeee5a7953e5303b93 authored 8 months ago by Timo Sachsenberg <[email protected]>
With system contrib, do not use static. Remove contrib fix

cdc210487d069533de32325ba963dad308c01b19 authored 8 months ago by Julianus Pfeuffer <[email protected]>
Update openms_ci_matrix_full.yml

f9ec9007fd2e528614c2f87bbc772a149c114d94 authored 8 months ago by Timo Sachsenberg <[email protected]>
Update openms_ci_matrix_full.yml

547aeecf2fc476e196bd2f50dfcd07a6d7f0c7fc authored 8 months ago by Timo Sachsenberg <[email protected]>
comment out tag creation of repo's we dont have access to right now

7322f57ee40ff4f8aadcfa00d4aa19fdcebd4151 authored 8 months ago by Samuel Wein <[email protected]>
Merge branch 'develop' into release/2.9.1-action

d3e9c1601506b9f016ee708c6276cd3025bff926 authored 8 months ago by Samuel Wein <[email protected]>
Update update_nightly.yml

b447ae35250f51dc4d2ca559bc489ce986510199 authored 8 months ago by Samuel Wein <[email protected]>
update GHA action versions for Node 20

6856ed89b536de53dba0bf901deebb830ee21aa0 authored 8 months ago by Samuel Wein <[email protected]>
Add code to update website on release.

c4f36777ddd870d296a855158f0f266157596169 authored 8 months ago by Samuel Wein <[email protected]>
Update package_general.cmake (#7341)

e9b1e8036dd895b1956b46d282ae472bdfaa691c authored 8 months ago by Timo Sachsenberg <[email protected]>
Bump contrib from `3a9eba4` to `5545518` (#7340)

Bumps [contrib](https://github.com/OpenMS/contrib) from `3a9eba4` to `5545518`.
- [Commits](htt...

820f72aca924a2d03fa94dde4dbe51956caec9b3 authored 8 months ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Update dependabot.yml

11f3b00dab91220a977f3d959fe75ce703474100 authored 8 months ago by Timo Sachsenberg <[email protected]>
Update openms_ci_matrix_full.yml

e6c4a26929bdf2b235fa5c4621e4c73537b70ade authored 8 months ago by Samuel Wein <[email protected]>
[DOC] update clang-format file to match coding conventions; applied on two classes

9e9fdf9438c31dc89de393a7833fc52e3afce9e0 authored 8 months ago by Chris Bielow <[email protected]>
Merge pull request #7339 from OpenMS/fix-mac-runner

Fix mac runner brew issues

0b1b5373d2aa1e14d18977c584741854a5cb6179 authored 8 months ago by Samuel Wein <[email protected]>
make doxygen code snippets easier to discover for new developers

5c1952f342d727fe46ff7156bbdf688f62a4820a authored 8 months ago by Chris Bielow <[email protected]>