github.com/OpenMS/OpenMS issues | Ecosyste.ms: OpenCollective

update release branch with latest changes

cbielow opened this pull request over 1 year ago

Fix slow string conversion

cbielow opened this pull request over 1 year ago

fix bogus icon message on Linux (where we do not embed icons)

cbielow opened this pull request over 1 year ago

Update pyoms Jenkinsfile such that it checks out into a local branch with the same name

jpfeuffer opened this pull request over 1 year ago

RNPXl Warnings

jpfeuffer opened this issue over 1 year ago

some comments / documentation

timosachsenberg opened this pull request over 1 year ago

Pyopenms jenkinsfile (for macOS silicon)

jpfeuffer opened this pull request over 1 year ago

[fix][pyopenms] adhoc sign libs that are copied into wheel

jpfeuffer opened this pull request over 1 year ago

Building pyopenms 3.0.0.dev wheel for M1 Pro

lfnothias opened this issue over 1 year ago

Debian packaging

lopippo opened this issue over 1 year ago

Seqan use in the new version

lopippo opened this issue over 1 year ago

No resource file (...../GUITOOLS/INIFileEditor.rc) found for INIFileEditor. No icon will be embedded.

lopippo opened this issue over 1 year ago

Bump src/pyOpenMS/pyopenms-docs from `8c1f161` to `db7568a`

dependabot[bot] opened this pull request over 1 year ago

fix error related to empty spectra in bruker files (#6897)

timosachsenberg opened this pull request over 1 year ago

fix error related to empty spectra in bruker files

timosachsenberg opened this pull request over 1 year ago

src/utils/FeatureFinderMetaboIdent.cpp

eeko-kon opened this issue over 1 year ago

Update containerdeploy.yml

timosachsenberg opened this pull request over 1 year ago

build contrib container from SHA of submodule

timosachsenberg opened this pull request over 1 year ago

Proof - json reader works with all unittests

SGSSGene opened this pull request over 1 year ago

From form: Command line option to export peptide identification as tsv exactly as this is done in GUI (with the button 'Export Table').

rahul799 opened this issue over 1 year ago

Bump src/pyOpenMS/pyopenms-docs from `fd4ceca` to `8c1f161`

dependabot[bot] opened this pull request over 1 year ago

MSGFPlusAdapter: java.lang.ArrayIndexOutOfBoundsException: 0

JustinGibbons opened this issue over 1 year ago

Honor MissedCleavages in SimpleSearchEngine

cbielow opened this pull request over 1 year ago

SimpleSearchEngine does not honor MissedCleavages

cbielow opened this issue over 1 year ago

MSstatsconverter removes peptides found in less than 3 runs from MSstats input

Roman-Si opened this issue over 1 year ago

Pmsb 23 mass trace detection

Austernpilz opened this pull request over 1 year ago

Installation of OpenMS on Mac M1

CM-07 opened this issue over 1 year ago

Better logging in RibonucleotideDB.cpp

poshul opened this pull request over 1 year ago

[Fix] bug fixing on FLASHDeconv

JeeH-K opened this pull request over 1 year ago

[Fix] bug fixing on FLASHDeconv

JeeH-K opened this pull request over 1 year ago

GNPSexport fails with Bruker Maxis mzML files

eeko-kon opened this issue over 1 year ago

testing takes forever

Austernpilz opened this issue over 1 year ago

Feature - reading parameters via JSON file

SGSSGene opened this pull request over 1 year ago

[NOMERGE] demo of CWL tool description export for all OpenMS tools

SGSSGene opened this pull request over 1 year ago

[FEATURE] Make CMake work with coin from brew. Complete the vcpkg recipe.

jpfeuffer opened this pull request over 1 year ago

Fix gcc13 error and warnings

SGSSGene opened this pull request over 1 year ago

jenkins builds broken

timosachsenberg opened this issue over 1 year ago

Bump src/pyOpenMS/pyopenms-docs from `fd4ceca` to `4d0b9a5`

dependabot[bot] opened this pull request over 1 year ago

[FIX] Param merging with empty subsections

jpfeuffer opened this pull request over 1 year ago

Bump src/pyOpenMS/pyopenms-docs from `a583c73` to `fd4ceca`

dependabot[bot] opened this pull request over 1 year ago

Bump src/pyOpenMS/pyopenms-docs from `a583c73` to `1dba25c`

dependabot[bot] opened this pull request over 1 year ago

Pmsb 23 mass trace detection

Austernpilz opened this pull request over 1 year ago

update FLASHDeconv to the newest version

JeeH-K opened this pull request over 1 year ago

Adding FLASHDeconvWizard feature

JeeH-K opened this pull request over 1 year ago

custom Debian package broken

cbielow opened this issue over 1 year ago

Bump src/pyOpenMS/pyopenms-docs from `a583c73` to `96ce56b`

dependabot[bot] opened this pull request over 1 year ago

zlib.dll missing?

TimKarr opened this issue over 1 year ago

Wheel/Packages server is returning 503.

PierreSnell opened this issue over 1 year ago

Update FLASHDeconv and add FLASHDeconvWizard

JeeH-K opened this issue over 1 year ago

MetaProSIP: typo

bernt-matthias opened this pull request over 1 year ago

set up a streamlit server

timosachsenberg opened this issue over 1 year ago

MapAlignerPoseClustering

eeko-kon opened this issue over 1 year ago

Add version of modpepgen with incremental masses.

jpfeuffer opened this pull request over 1 year ago

ModPepGen version that also calculates masses

jpfeuffer opened this pull request over 1 year ago

Pyopenms: Use full test suite in wheels actions and update building instructions

jpfeuffer opened this issue over 1 year ago

Error encountered when processing TMT SPS-MS3 data with IsobaricAnalyzer

radusuciu opened this issue over 1 year ago

after building pyopenms, Ctest failed (error message:Test not available without configuration. (Missing "-C <config>"?))

JKVISION1101 opened this issue over 1 year ago

[FEATURE] ProtDigest with indices, simpler ModPepGen

jpfeuffer opened this pull request over 1 year ago

Bump src/pyOpenMS/pyopenms-docs from `a583c73` to `a149d50`

dependabot[bot] opened this pull request over 1 year ago

SearchDatabase

Maxalcer opened this pull request over 1 year ago

Push MTD

Tristan2301 opened this pull request over 1 year ago

Add macOS ARM CI

jpfeuffer opened this issue over 1 year ago

AssayGeneratorMetabo .featureXML compound annotations

karlssoc opened this issue over 1 year ago

OpenMS 2.0 Softwipe score

cbielow opened this issue over 1 year ago

ProteomicsLFQ: Search settings are not matching across IdentificationRuns

JustinGibbons opened this issue over 1 year ago

Bump src/pyOpenMS/pyopenms-docs from `a583c73` to `b238a66`

dependabot[bot] opened this pull request over 1 year ago

Fix pphires

timosachsenberg opened this pull request over 1 year ago

evaluate the panel framework for more advanced web apps

timosachsenberg opened this issue over 1 year ago

Go through OpenMS 3.0 paper and fill in information

timosachsenberg opened this issue over 1 year ago

master thesis to apply some implementations/ideas from sage-ms

timosachsenberg opened this issue over 1 year ago

CometAdapter pin file label always 1

jonasscheid opened this issue over 1 year ago

Support for consensus maps in .oms (SQLite) files

hendrikweisser opened this pull request over 1 year ago

M2 chip: successfully built pyopenms but failed all tests. Process are killed when importing pyopenms

YuanyeChi opened this issue over 1 year ago

Previous docker containers do not exist?

jcharkow opened this issue over 1 year ago

SiriusAdapter terminal output (email and password reveal)

eeko-kon opened this issue over 1 year ago

Sage MS

timosachsenberg opened this pull request over 1 year ago

Pytorch

Arslan-Siraj opened this pull request over 1 year ago

Modified PeakPickerHiRes to address issue #5687

alhigaylan opened this pull request over 1 year ago

genericized file loader where possible

poshul opened this pull request over 1 year ago

Sign NSIS package (windows installer)

timosachsenberg opened this issue over 1 year ago

Update ranges if spectra/experiments are read from file

timosachsenberg opened this pull request over 1 year ago

CDASH certificate error

timosachsenberg opened this issue over 1 year ago

[FEATURE][PYOMS] try adding some wrapnogil

jpfeuffer opened this pull request over 1 year ago

[ByGHAction] Updated OpenMS package version numbers

github-actions[bot] opened this pull request over 1 year ago

Softwipe results -- with action items for everybody who wants to fix stuff

cbielow opened this issue over 1 year ago

Try making pandas and matplotlib optional

jpfeuffer opened this pull request over 1 year ago

OpenSwathAssayGenerator check for duplicate transitions

jcharkow opened this issue over 1 year ago

Overhaul archive

jpfeuffer opened this issue over 1 year ago

Feat/hdf5-blosc

timosachsenberg opened this pull request over 1 year ago

"pattern and collected intensities don't match" error in MetaproSIP

xyz1396 opened this issue over 1 year ago

OpenMS_tutorial still has refs to ftp.mi.fu-berlin.de/OpenMS/nightly_binaries/

poshul opened this issue over 1 year ago

Ion Mobility 1/k0 to CCS

timosachsenberg opened this issue over 1 year ago

test workflows added by eugen to KNIME hub

timosachsenberg opened this issue over 1 year ago

Feature/improve flash forced ms

poshul opened this pull request over 1 year ago

[FIX] Merge Residues of same modification

Amit0617 opened this pull request over 1 year ago

Updated FLASHDeconv

JeeH-K opened this pull request almost 2 years ago

Converted iterator for loops to range for loops (initial)

AmandaWein opened this pull request almost 2 years ago

Peak1D and Peak2D: change intensity type to double as well

timosachsenberg opened this pull request almost 2 years ago

Speedup Ion Mobility OpenSwath Processing

jcharkow opened this pull request almost 2 years ago

Use Prebuilt contrib's for CI

poshul opened this issue almost 2 years ago