github.com/OpenMS/OpenMS issues | Ecosyste.ms: OpenCollective

TOPP_IsobaricAnalyzer_MS3TMT10Plex_1_out1 failed in ARM64

sagitter opened this issue about 1 year ago

update mascot test file

timosachsenberg opened this pull request about 1 year ago

Only load MS1 in EICExtractor

timosachsenberg opened this pull request about 1 year ago

PeakFileOptions should not be set as member of FileHandler

timosachsenberg opened this issue about 1 year ago

Bump THIRDPARTY from `e492568` to `947b56a`

dependabot[bot] opened this pull request about 1 year ago

Bump contrib from `3d8710c` to `69e61f2`

dependabot[bot] opened this pull request about 1 year ago

IsobaricQuantifier MS2/3 error handling

jpfeuffer opened this issue about 1 year ago

Fix mascot thirdparty test

timosachsenberg opened this issue about 1 year ago

Fix some bugs and warnings

cbielow opened this pull request about 1 year ago

FLASHDeconvWizard: runnning fails

JeeH-K opened this issue about 1 year ago

Fix ubuntu wheels test

matteopilz opened this pull request about 1 year ago

Add more tests for FLASHDeconv

bernt-matthias opened this pull request about 1 year ago

fix: xvfb not starting when xvfb is already running

SGSSGene opened this pull request about 1 year ago

improve tool descriptions (slightly)

bernt-matthias opened this pull request about 1 year ago

Feat/check for duplicate options

SGSSGene opened this pull request about 1 year ago

[INFO] OpenMSInfo: report which ILP lib we use

cbielow opened this pull request about 1 year ago

[FIX] MSFragger: relative path to database

cbielow opened this pull request about 1 year ago

Remove duplicate option names

SGSSGene opened this pull request about 1 year ago

[FIX] mzIdentML improvements (cvParam parsing and more)

cbielow opened this pull request about 1 year ago

MSFragger does not work with relative pathnames

bernt-matthias opened this issue about 1 year ago

MetaboliteAdductDecharger - multimer annotation

YasinEl opened this issue about 1 year ago

Core dump for AssayGeneratorMetabo

bernt-matthias opened this issue about 1 year ago

Core dump for dechargers

bernt-matthias opened this issue about 1 year ago

remove remnant CompNovo test data

bernt-matthias opened this pull request about 1 year ago

Fix MzQuantMLHandler error when <Modification> element has no "massDelta" attribute)

cbielow opened this pull request about 1 year ago

Release/3.1.0

timosachsenberg opened this pull request about 1 year ago

MzQuantMLHandler error when <Modification> element has no "massDelta" attribute

elrubio opened this issue about 1 year ago

Fix a few AddressSanitizer complaints due to uninitialized variables

enetz opened this pull request about 1 year ago

Windows installer hangs when installing VS runtime

cbielow opened this issue about 1 year ago

FlashDeconv: add citation to TOPP tool and more docs

cbielow opened this pull request about 1 year ago

Update executables.cmake

Arslan-Siraj opened this pull request about 1 year ago

disable failing SIRIUS tests

timosachsenberg opened this pull request about 1 year ago

[FEATURE] TOPPAS: search tools by name

cbielow opened this pull request about 1 year ago

sync

timosachsenberg opened this pull request about 1 year ago

sync with develop

timosachsenberg opened this pull request about 1 year ago

disable rsync

timosachsenberg opened this pull request about 1 year ago

some experiments regarding the imputation step in elutionmodelfitter

timosachsenberg opened this pull request about 1 year ago

fix FlashDeconv docu (missing parameters)

cbielow opened this pull request about 1 year ago

[code reading and commenting practice] SimpleSearchEngineAlgorithm.cpp

Ayesha-Feroz opened this pull request about 1 year ago

Fix TOPP categories and make OpenMSInfo a TOPP tool

cbielow opened this pull request about 1 year ago

Read RT back in minutes in percolator in file

timosachsenberg opened this pull request about 1 year ago

[FFID][tweak] thoughts on settings/scores

jpfeuffer opened this pull request about 1 year ago

[mzIdentML] fall back to name element for DatabaseName

jpfeuffer opened this pull request about 1 year ago

[ByGHAction] Updated OpenMS package version numbers

github-actions[bot] opened this pull request about 1 year ago

Ini files have duplicate option names

SGSSGene opened this issue about 1 year ago

Newly created folders in build archive no accessible

poshul opened this issue about 1 year ago

Version number of .TOPPAS files in tests not updated automatically on new release

poshul opened this issue about 1 year ago

TOPP_ProteomicsLFQ_10 out tests failing on windows in CI

poshul opened this issue about 1 year ago

Release checklist for 3.2.0

poshul opened this issue about 1 year ago

Update INIUpdater_1_noupdate.toppas to output correct version

poshul opened this pull request about 1 year ago

removed unstable (SVM) tests

timosachsenberg opened this pull request about 1 year ago

remove uniqueToProt from mascot psm features

jonasscheid opened this pull request about 1 year ago

InternalCalibration fails due to SageAdapter's idXML files storing RT as minutes

elrubio opened this issue about 1 year ago

MASCOT:uniqueToProt is added by PSMFeatureExtractor but can potentially leak td-information

jonasscheid opened this issue about 1 year ago

q-value based filtering of features in PLFQ

timosachsenberg opened this pull request over 1 year ago

[code reading practice]Update Tagger.cpp

Ayesha-Feroz opened this pull request over 1 year ago

add column for area output

timosachsenberg opened this pull request over 1 year ago

[HOTFIX][PIN files] wrong mz loading

jpfeuffer opened this pull request over 1 year ago

make mzData more robust against wrong 'length' attributes for binary data

cbielow opened this pull request over 1 year ago

SageAdapter: No accession found

elrubio opened this issue over 1 year ago

Wrong m/z calculation when loading sage/percolator files

elrubio opened this issue over 1 year ago

update changelog helper for 2023

mr-c opened this pull request over 1 year ago

readded HTML tutorial parts

poshul opened this pull request over 1 year ago

Update SIMDe to 2023-10-02 snapshot of 0.7.7

mr-c opened this pull request over 1 year ago

Update CHANGELOG

timosachsenberg opened this pull request over 1 year ago

SAGe updated restricted to null

ypriverol opened this pull request over 1 year ago

[FIX][SageAdapter] Use `restrict: null`

jpfeuffer opened this pull request over 1 year ago

bring back OpenMS dev tutorial

cbielow opened this issue over 1 year ago

add option to extract decoy features in FFID, filter by feature score in ProteomicsLFQ

timosachsenberg opened this pull request over 1 year ago

SageAdapter option to keep json as debug output

timosachsenberg opened this pull request over 1 year ago

Deisotope Fragment Tolerance Exception

matteopilz opened this pull request over 1 year ago

Update SageAdapter.cpp

timosachsenberg opened this pull request over 1 year ago

MzIdentML parser error for DatabaseName/userParam

elrubio opened this issue over 1 year ago

[FIX] DatabaseName element in MzIdentMLDOMHandler.cpp

jpfeuffer opened this pull request over 1 year ago

IDFileConverter: Unexpected internal error (Could not convert string '' to a double value)

elrubio opened this issue over 1 year ago

ProteaseDigestion looses a tryptic peptide contained in a bigger tryptic peptide

Roman-Si opened this issue over 1 year ago

[ProteomicsLFQ] Parameterize min. proportion for requant.

jpfeuffer opened this pull request over 1 year ago

make UBSan errors to fail tests

timosachsenberg opened this pull request over 1 year ago

SageAdapter fixes

timosachsenberg opened this pull request over 1 year ago

libqt5core is missing from the image

shubham1637 opened this issue over 1 year ago

Bump THIRDPARTY from `402992f` to `a3e6ffb`

dependabot[bot] opened this pull request over 1 year ago

Keep main score in PercolatorAdapter

jpfeuffer opened this pull request over 1 year ago

fix ASAN bug in MapAlignmentAlgorithmIdentification.h

timosachsenberg opened this pull request over 1 year ago

Expand EICExtractor

timosachsenberg opened this issue over 1 year ago

UBSan fixes

timosachsenberg opened this pull request over 1 year ago

Update SemanticValidator.h

timosachsenberg opened this pull request over 1 year ago

Fix asan bug in SageAdapter.cpp

timosachsenberg opened this pull request over 1 year ago

add mandatory context message to Exception::InvalidSize

cbielow opened this issue over 1 year ago

add SpectraMerger tests

cbielow opened this issue over 1 year ago

SpectraMerger: fix empty ms-levels which lead to exception

cbielow opened this pull request over 1 year ago

Update AddressSanitizer.cmake

timosachsenberg opened this pull request over 1 year ago

expose error in ResidueDB code

timosachsenberg opened this pull request over 1 year ago

Prot quant comment lines

timosachsenberg opened this pull request over 1 year ago

[doc] ProteomicsLFQ.cpp

timosachsenberg opened this pull request over 1 year ago

include UndefinedBehaviorSanitizer

timosachsenberg opened this pull request over 1 year ago

restore TOPPAS tutorial

cbielow opened this pull request over 1 year ago

Bump contrib from `04d64c6` to `69e61f2`

dependabot[bot] opened this pull request over 1 year ago

fix some remaining occurances of util

timosachsenberg opened this pull request over 1 year ago

rename some of the old UTIL tests to TOPP tests

timosachsenberg opened this pull request over 1 year ago

fix ProteinQuantifier

timosachsenberg opened this pull request over 1 year ago