github.com/OpenMS/OpenMS issues | Ecosyste.ms: OpenCollective

update FLASHDeconv to the newest version

JeeH-K opened this pull request over 1 year ago

Adding FLASHDeconvWizard feature

JeeH-K opened this pull request over 1 year ago

custom Debian package broken

cbielow opened this issue over 1 year ago

Bump src/pyOpenMS/pyopenms-docs from `a583c73` to `96ce56b`

dependabot[bot] opened this pull request over 1 year ago

zlib.dll missing?

TimKarr opened this issue over 1 year ago

Wheel/Packages server is returning 503.

PierreSnell opened this issue over 1 year ago

Update FLASHDeconv and add FLASHDeconvWizard

JeeH-K opened this issue over 1 year ago

MetaProSIP: typo

bernt-matthias opened this pull request over 1 year ago

set up a streamlit server

timosachsenberg opened this issue over 1 year ago

MapAlignerPoseClustering

eeko-kon opened this issue over 1 year ago

Add version of modpepgen with incremental masses.

jpfeuffer opened this pull request over 1 year ago

ModPepGen version that also calculates masses

jpfeuffer opened this pull request over 1 year ago

Pyopenms: Use full test suite in wheels actions and update building instructions

jpfeuffer opened this issue over 1 year ago

Error encountered when processing TMT SPS-MS3 data with IsobaricAnalyzer

radusuciu opened this issue over 1 year ago

after building pyopenms, Ctest failed (error message:Test not available without configuration. (Missing "-C <config>"?))

JKVISION1101 opened this issue over 1 year ago

[FEATURE] ProtDigest with indices, simpler ModPepGen

jpfeuffer opened this pull request over 1 year ago

Bump src/pyOpenMS/pyopenms-docs from `a583c73` to `a149d50`

dependabot[bot] opened this pull request over 1 year ago

SearchDatabase

Maxalcer opened this pull request over 1 year ago

Push MTD

Tristan2301 opened this pull request over 1 year ago

Add macOS ARM CI

jpfeuffer opened this issue over 1 year ago

AssayGeneratorMetabo .featureXML compound annotations

karlssoc opened this issue over 1 year ago

OpenMS 2.0 Softwipe score

cbielow opened this issue over 1 year ago

ProteomicsLFQ: Search settings are not matching across IdentificationRuns

JustinGibbons opened this issue over 1 year ago

Bump src/pyOpenMS/pyopenms-docs from `a583c73` to `b238a66`

dependabot[bot] opened this pull request over 1 year ago

Fix pphires

timosachsenberg opened this pull request over 1 year ago

evaluate the panel framework for more advanced web apps

timosachsenberg opened this issue over 1 year ago

Go through OpenMS 3.0 paper and fill in information

timosachsenberg opened this issue over 1 year ago

master thesis to apply some implementations/ideas from sage-ms

timosachsenberg opened this issue over 1 year ago

CometAdapter pin file label always 1

jonasscheid opened this issue almost 2 years ago

Support for consensus maps in .oms (SQLite) files

hendrikweisser opened this pull request almost 2 years ago

M2 chip: successfully built pyopenms but failed all tests. Process are killed when importing pyopenms

YuanyeChi opened this issue almost 2 years ago

Previous docker containers do not exist?

jcharkow opened this issue almost 2 years ago

SiriusAdapter terminal output (email and password reveal)

eeko-kon opened this issue almost 2 years ago

Sage MS

timosachsenberg opened this pull request almost 2 years ago

Pytorch

Arslan-Siraj opened this pull request almost 2 years ago

Modified PeakPickerHiRes to address issue #5687

alhigaylan opened this pull request almost 2 years ago

genericized file loader where possible

poshul opened this pull request almost 2 years ago

Sign NSIS package (windows installer)

timosachsenberg opened this issue almost 2 years ago

Update ranges if spectra/experiments are read from file

timosachsenberg opened this pull request almost 2 years ago

CDASH certificate error

timosachsenberg opened this issue almost 2 years ago

[FEATURE][PYOMS] try adding some wrapnogil

jpfeuffer opened this pull request almost 2 years ago

[ByGHAction] Updated OpenMS package version numbers

github-actions[bot] opened this pull request almost 2 years ago

Softwipe results -- with action items for everybody who wants to fix stuff

cbielow opened this issue almost 2 years ago

Try making pandas and matplotlib optional

jpfeuffer opened this pull request almost 2 years ago

OpenSwathAssayGenerator check for duplicate transitions

jcharkow opened this issue almost 2 years ago

Overhaul archive

jpfeuffer opened this issue almost 2 years ago

Feat/hdf5-blosc

timosachsenberg opened this pull request almost 2 years ago

"pattern and collected intensities don't match" error in MetaproSIP

xyz1396 opened this issue almost 2 years ago

OpenMS_tutorial still has refs to ftp.mi.fu-berlin.de/OpenMS/nightly_binaries/

poshul opened this issue almost 2 years ago

Ion Mobility 1/k0 to CCS

timosachsenberg opened this issue almost 2 years ago

test workflows added by eugen to KNIME hub

timosachsenberg opened this issue almost 2 years ago

Feature/improve flash forced ms

poshul opened this pull request almost 2 years ago

[FIX] Merge Residues of same modification

Amit0617 opened this pull request almost 2 years ago

Updated FLASHDeconv

JeeH-K opened this pull request about 2 years ago

Converted iterator for loops to range for loops (initial)

AmandaWein opened this pull request about 2 years ago

Boost spirit karma < 1.67 is bugged

jpfeuffer opened this issue about 2 years ago

Peak1D and Peak2D: change intensity type to double as well

timosachsenberg opened this pull request about 2 years ago

Speedup Ion Mobility OpenSwath Processing

jcharkow opened this pull request about 2 years ago

/usr/bin/run-clang-tidy-13.py ../OpenMS/src/openms -checks='-*,perfor…

timosachsenberg opened this pull request about 2 years ago

Use Prebuilt contrib's for CI

poshul opened this issue about 2 years ago

Create OMSPrerequisities.xml

timosachsenberg opened this pull request about 2 years ago

TOPPView is not opening on macOS 12.6 (M1 Pro cpu)

lfnothias opened this issue about 2 years ago

initial support for export of peak annotations

timosachsenberg opened this pull request about 2 years ago

Comet has trouble searching converted IM data

timosachsenberg opened this issue over 2 years ago

Release Checklist for 3.0

poshul opened this issue over 2 years ago

Update to Qt6

jpfeuffer opened this issue over 2 years ago

Split KNIME plugin into OpenMS and Thirdparty

jpfeuffer opened this issue over 2 years ago

make spectrum and areaiterator const only

timosachsenberg opened this pull request over 2 years ago

Check KNIME 4.6 compatibility

timosachsenberg opened this issue over 2 years ago

Pyopenms not installable on new Macs with M1 chip

zmunro opened this issue over 2 years ago

Convert iterator for loops

timosachsenberg opened this issue over 2 years ago

Patch/use tdl new take

SGSSGene opened this pull request over 2 years ago

Update CommonEnums.cpp

timosachsenberg opened this pull request over 2 years ago

MSFragger versions supported by MSFraggerAdapter

zhuchcn opened this issue over 2 years ago

added WizardHelper class to be shared with other Wizards

JeeH-K opened this pull request almost 3 years ago

SiriusAdapter issue (sirius invocation failed)

eeko-kon opened this issue almost 3 years ago

Use new ID data structures in FeatureFinderIdentification (and ProteomicsLFQ)

hendrikweisser opened this pull request almost 3 years ago

Feature id promotion

poshul opened this pull request almost 3 years ago

Deprecated (doxygen) Doc pages notice does not work

jpfeuffer opened this issue almost 3 years ago

Feature/isotope class

hroest opened this pull request almost 3 years ago

[FEATURE] TSG option to add internal ions

timosachsenberg opened this pull request almost 3 years ago

Installer packages too large

jpfeuffer opened this issue almost 3 years ago

Combine PSMFeatureExtractor and Percolator in PercolatorAdapter

jpfeuffer opened this issue almost 3 years ago

[FEATURE] prepare for ion mobility support in FFCentroid

hroest opened this pull request almost 3 years ago

[BUILD] Try to silence NPY Deprecated warnings in pyopenms

jpfeuffer opened this pull request about 3 years ago

How to create MassTrace objects with pyopenms

jtprince opened this issue about 3 years ago

pass calling process environment to children

timosachsenberg opened this pull request about 3 years ago

FLASHIda

JeeH-K opened this pull request about 3 years ago

Added new features in SpectraMerger

JeeH-K opened this pull request about 3 years ago

PeakPickerHiRes fails with leading flank peaks

hroest opened this issue about 3 years ago

Clang tidy performance type-promotion-in-math-fn,move-const-arg,unnecessary-copy-initialization

timosachsenberg opened this pull request about 3 years ago

Wrapping new IdentificationData in pyopenms

timosachsenberg opened this issue about 3 years ago

Patch/use td library

SGSSGene opened this pull request about 3 years ago

PeakTypeEstimator fails for timsTOF profile data

hroest opened this issue about 3 years ago

Add MZMLb support

poshul opened this issue about 3 years ago

How to extract DIA MS2 consensus features for ClusterMassTraces

yyi17 opened this issue about 3 years ago

Pyopenms actions. Mismatch between building and testing versions

jpfeuffer opened this issue about 3 years ago

Add some std::moves to SpectrumMerger

jpfeuffer opened this issue about 3 years ago

ConsensusID failure because MS run path not interpreted from MSFragger idXML

zhuchcn opened this issue about 3 years ago

Split up OpenMS library

hroest opened this pull request about 3 years ago