Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/OpenMS

The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS

Correction1 MzCalibration

d6eff7d196e7f5e09018f5f906dd6b63d2b981d3 authored over 5 years ago by jschmacht <[email protected]>
[FIX] OPXL: several fixes to xquest.xml parsing

parsing of xProphet FDR values, the decoy string, mono-link masses, negative cross-link masses (...

6b18ffaaafe4d4de2aba2a45a232bf3f1794a83c authored over 5 years ago by enetz <[email protected]>
[FIX] OPXL: correctly initialize default decoy string for xquest.xml parsing

8080e23f5252420aa2c571345a3479dbd6c9a67c authored over 5 years ago by enetz <[email protected]>
[FEATURE] OPXL: add additional meta values to parsed xquest.xml files

374bebbdf4ec64dee99827dedebb6cc1246392eb authored over 5 years ago by enetz <[email protected]>
test

1fe38e3517d76bb293d5a2c4541a4f0df517813a authored over 5 years ago by kyowonjeong <[email protected]>
test

d99f083735ba83d82ec5c23569074542c31e3d46 authored over 5 years ago by kyowonjeong <[email protected]>
RTAlignment all

55bdd277540a48491734217914ec3fa090e4f4a3 authored over 5 years ago by jschmacht <[email protected]>
added more doxygen entries

fccc71ddce8f78aab35404dc3e3fce68698f30da authored over 5 years ago by Dominik Sebastian Schmitz <[email protected]>
solved minor issues

d3c120a56ebc79cfc6036659d528a05854732567 authored over 5 years ago by Dominik Sebastian Schmitz <[email protected]>
[NOP] move instead of copy

27c7490c6c1bd00a38162b093e200454212a6183 authored over 5 years ago by Timo Sachsenberg <[email protected]>
[FEATURE] refactor ModPepGenerator and expose to pyOpenMS

44218f5146ecae73be591db1adf3915212dc3469 authored over 5 years ago by timosachsenberg <[email protected]>
[FIX] typos, const

44543e6086a489cb56da58c579dd808ae6db1015 authored over 5 years ago by Hannes Roest <[email protected]>
[FIX] headers

c4ea515c2cb5356b1f1b378ad5f5fb40ddea81bd authored over 5 years ago by Hannes Roest <[email protected]>
[TEST] fix pyopenms tests

99e8f09837444d35fc050c0147ba4bc3cc240983 authored over 5 years ago by Hannes Roest <[email protected]>
MzCalibration dupicates removal

b4b7e4eb51d0ba029821e6a121933b99029a194b authored over 5 years ago by jschmacht <[email protected]>
RTAlignment test begin

cf3973647514f611ea675e33b18af7f666ebb6fe authored over 5 years ago by jschmacht <[email protected]>
requires, getResult implemented

0f977a3957b9f7b22dffcdbd07c5488bfb65d531 authored over 5 years ago by swew98 <[email protected]>
RTAlignment without test

8ec00ed1131a123d1f4cf1a6a09d8fdfa3164a79 authored over 5 years ago by jschmacht <[email protected]>
Merge branch 'develop' of https://github.com/cbielow/OpenMS into fragmentMassError

9cf561f74ec52efe26b799150180e821aaf22ebb authored over 5 years ago by swew98 <[email protected]>
files for fragmentMassError

2faec2dbf8d7b4ad7ae69433ee920245d5acfe37 authored over 5 years ago by swew98 <[email protected]>
Merge pull request #43 from swewagner/ms2idrateLambda

[FEATURE] Ms2idrate via lambda

d9a1e10ed421bfb699db43f9a0a81d2b49e3d103 authored over 5 years ago by Chris Bielow <[email protected]>
Merge pull request #4026 from timosachsenberg/feature/SSE_algorithm

[FEATURE] moved SSE code to class, added documentation

85525546d9a1182bc4c934e6a6cae4fc08b7c1d3 authored over 5 years ago by Timo Sachsenberg <[email protected]>
emptyhits in lambda, documentation in QCBase

aba3af382a53610734eefac3c0bf12b5591608bd authored over 5 years ago by swew98 <[email protected]>
Charge distribution with isotope span

73b4fa9dd2cf89e08f73493ff038493478dd4271 authored over 5 years ago by kyowonjeong <[email protected]>
changed warningposition emptyHits, adjusted iterateFeatureMap for const FeatureMap

4a2be486aba618afaeb2d3fe2cb7c27190e5789b authored over 5 years ago by swew98 <[email protected]>
MzCalibration all

51bc5a36242ef506d45a8df8541cb1589863951b authored over 5 years ago by jschmacht <[email protected]>
Merge remote-tracking branch 'origin/feature/SSE_algorithm' into feature/SSE_algorithm

e0851037a13936871f21a27a34a9c96a0b9ee9de authored over 5 years ago by Timo Sachsenberg <[email protected]>
[FIX] addressed some reviewer comments

61facee341cc61834ed1fcae86dba9d9748dd6c6 authored over 5 years ago by Timo Sachsenberg <[email protected]>
Merge remote-tracking branch 'origin/develop' into refactor/AssayGeneratorMetabo

4638f604b166953d935e0ea234e4704fd9c03cdc authored over 5 years ago by oliveralka <[email protected]>
[ADD] multiple possible identifications for one feature (MS2 Sirius)

b6c858f83c760114b743d9e40b980b992dc1c4ab authored over 5 years ago by oliveralka <[email protected]>
Update src/openms/source/ANALYSIS/ID/SimpleSearchEngineAlgorithm.cpp

Co-Authored-By: timosachsenberg <[email protected]>

1cee2942308a6a7dd777054621ea52cbef0cccb8 authored over 5 years ago by Hannes Roest <[email protected]>
Thermo 7k 120k perfect

2f494987da986a97b00841cefbbefc1bb30b7a48 authored over 5 years ago by kyowonjeong <[email protected]>
Thermo 7k 120k perfect

81695242340525a2d9f71ed4aca565bc2708625a authored over 5 years ago by kyowonjeong <[email protected]>
Thermo 7k 120k perfect

70d15b1bb40378bd6d7c180cb820fd3424c7f576 authored over 5 years ago by kyowonjeong <[email protected]>
Thermo 7k 120k perfect

fdfb75b843a526b924077ef289ac74b28179775e authored over 5 years ago by kyowonjeong <[email protected]>
Thermo 7k 120k perfect

9733e36759ecc8977231c2507911216ffb09c058 authored over 5 years ago by kyowonjeong <[email protected]>
Thermo 7k 120k perfect

287b5fbbdeeb27b73f11dd491b1b7bf1549ca82c authored over 5 years ago by kyowonjeong <[email protected]>
Thermo 7k 120k perfect

29280400971395f9a66581d7d2eb9017fa6243b6 authored over 5 years ago by kyowonjeong <[email protected]>
Thermo 7k 120k perfect

b131432b9a1f599fa4f64024b70ecb8e73ed0eb2 authored over 5 years ago by kyowonjeong <[email protected]>
Update SimpleSearchEngineAlgorithm.pxd

f6235ca9d7bc616141a57c86fda24995bb873fb1 authored over 5 years ago by Hannes Roest <[email protected]>
[PYOPENMS] fix pyopenms

1ed05eba8b75b2675e50a1db7e2b6b80ec8f039e authored over 5 years ago by Hannes Roest <[email protected]>
fix

bb936a3b19c689c09e8a031456487c52f33c38c7 authored over 5 years ago by Hannes Roest <[email protected]>
[FIX] use a much smaller value for lookup

- use 1 kb instead of 10 mb
- check whether value falls outside the range of the lookup table be...

b251dfbb9d4acd112ab887354515537c0bc540a5 authored over 5 years ago by Hannes Roest <[email protected]>
[TEST] fix test

495dc647ad2414363f177be5b20e593e62478d8b authored over 5 years ago by Hannes Roest <[email protected]>
[DOC] fix docu

025d7e58e79b88b2a42e3528276bc97ae6c6d8a8 authored over 5 years ago by Hannes Roest <[email protected]>
[FEATURE] change interface / defaults

c52cbd3fb74e2963609b35e6c9c77d3b13b39364 authored over 5 years ago by Hannes Roest <[email protected]>
added doxygen entries in h

56fccd9413111ff64f09d06c04d417ef978d24fb authored over 5 years ago by Dominik Sebastian Schmitz <[email protected]>
startet to solve minor issues

57a843fb9a2ae123400fe711b1fef860e0f94b50 authored over 5 years ago by Dominik Sebastian Schmitz <[email protected]>
upgrade: lambda function instead of helper, uses QCBase::iteratFeature

f333d2bcf2ad752e3b8cda4e15c5435c96686d25 authored over 5 years ago by swew98 <[email protected]>
Merge branch 'develop' of https://github.com/cbielow/OpenMS into ms2idrateLambda

c0d99d1fb37d5eafa211a74b3ca2da4e830482c4 authored over 5 years ago by swew98 <[email protected]>
Merge pull request #42 from swewagner/missedCleavages

[FEATURE] Missed cleavages metric

48037407253b5b02bcde80ba2172baf351eb309b authored over 5 years ago by Chris Bielow <[email protected]>
Update MissedCleavages.h

5058854980b763278a2f16d028f29d71bf921894 authored over 5 years ago by Chris Bielow <[email protected]>
changes regarding to pull request

ab69f7bbdbbe5c6e4c0c18f489483f7611b8521e authored over 5 years ago by swew98 <[email protected]>
changes regarding to pull request

dcc26a8bc5c82304002b0fe2467b0f43b87896be authored over 5 years ago by swew98 <[email protected]>
Update SimpleSearchEngineAlgorithm.pxd

8b6b4b2024bed174db0e6cf1e31fcf782f887ffa authored over 5 years ago by Hannes Roest <[email protected]>
finished draft

483bdace98ce9b6f5f45977c3d7f1f60466768ec authored over 5 years ago by Dominik Sebastian Schmitz <[email protected]>
just comments

411eb7766c2515866240570aa4d6ca863f58804e authored over 5 years ago by swew98 <[email protected]>
lambda function in compute

33c755a2acfd98bd8699fb79c6e4deabd265fe31 authored over 5 years ago by swew98 <[email protected]>
documentation, requires corrected, metric added to QCTOPPTool

83a36c444c0072961c262e9284c44cf9385d8601 authored over 5 years ago by swew98 <[email protected]>
Update SimpleSearchEngineAlgorithm.pxd

8cf42d12ed709193c422ab52a54cd0996e852b6b authored over 5 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' of https://github.com/cbielow/OpenMS into develop

e63101ff63e145f5f7ec33fd58ef0a99b358d2c1 authored over 5 years ago by TomW <[email protected]>
Update SimpleSearchEngineAlgorithm.cpp

1a52c6cee894efec622554a81278629b94510561 authored over 5 years ago by Timo Sachsenberg <[email protected]>
Update UTILS.doxygen

876068ff9a43f762ef7eeb7e8e4c361b7396f40d authored over 5 years ago by Timo Sachsenberg <[email protected]>
Update SimpleSearchEngineAlgorithm_test.cpp

d6d300b15116440de5eb23035cec0e9b5d4289e8 authored over 5 years ago by Timo Sachsenberg <[email protected]>
Testclass for MissedCleavages, QCBase: iteratorfunction is static

a6f835d7ab1621d9a2a58502cddd1c09698c5a0d authored over 5 years ago by swew98 <[email protected]>
test complete

a50d72eea16d68a955903bd327974159ae3c2d49 authored over 5 years ago by Dominik Sebastian Schmitz <[email protected]>
merged from develop

93b86aa51696deca70b87a8b9f837ff3b5610683 authored over 5 years ago by Dominik Sebastian Schmitz <[email protected]>
merged from upstream

6fa4606b63c9a5ccc30b478719001361cbfdeec8 authored over 5 years ago by Dominik Sebastian Schmitz <[email protected]>
[FEATURE] move MzTabExport to lib and extend export

ad55c087e22d8940f0402fbf5b3b3acd2b6034a0 authored over 5 years ago by Timo Sachsenberg <[email protected]>
fixed cpp and test

d9e5dcc3fb5a7066ee73c7f13637d023d6136fe4 authored over 5 years ago by Dominik Sebastian Schmitz <[email protected]>
[FIX-#1041,TEST] support negative charges in 'EmpiricalFormula::getAverageWeight' (fixes #1041)

548042ece378eb752e0be582d50e97b7e26865dd authored over 5 years ago by Hendrik Weisser <[email protected]>
[pyOpenMS] added pxd

32a80b1e435ea4dc4f2a2f046787711f5b9e9388 authored over 5 years ago by Timo Sachsenberg <[email protected]>
[FEATURE] moved SSE code to class, added documentation

7422723494307876e34f45f83ecddfb7bd411c4c authored over 5 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #4020 from hendrikweisser/rna-lfq-ambivar

NucleicAcidSearchEngine improvements: custom mods, higher speed

a297485ffba6253bc9090ec2013d0b071b998a23 authored over 5 years ago by Timo Sachsenberg <[email protected]>
[API] renamed 'TheoreticalSpectrumGeneratorNA' to 'NucleicAcidSpectrumGenerator'

68c54c41e5c2b260cd1187c0b885e78390d57b28 authored over 5 years ago by Hendrik Weisser <[email protected]>
[FIX] fixed ordering issue in 'ModifiedNASequenceGenerator_test'

96d0412cf68c72d16e84266675e1b738fa01ab1d authored over 5 years ago by Hendrik Weisser <[email protected]>
Merge remote-tracking branch 'JeeH-K/feature/TDdeconv' into feature/TDdeconv

e0e38d6c103c2c6d706f483b8c9dfa1d57bcf4b7 authored over 5 years ago by kyowonjeong <[email protected]>
works good for 7K resolution

1a76015105e86b312c7ad580ffdc51ce02a0cd60 authored over 5 years ago by kyowonjeong <[email protected]>
Feature/flkd charge adduct merging (#4010)

* charge and adduct treatment options in FLKD

* adapted default params for adduct/charge merg...

7bf77362a63b335b898a6b4c66d06862e600c047 authored over 5 years ago by FabianAicheler <[email protected]>
[DOC] improved categorisation of UTILS tools on documentation page (#4024)

c9f84e994750cc213e4486714b25679057df1f2e authored over 5 years ago by hendrikweisser <[email protected]>
changes regarding to merge conflict

2c0d033ca6d8ca660732b09bb6a314ab3448dae1 authored over 5 years ago by swew98 <[email protected]>
Merge pull request #40 from swewagner/identificationRate

[FEATURE] metric: MS2 Identification rate

c25554bd8b34b7fe3f0282bc793ba1f5a6c0f33c authored over 5 years ago by Chris Bielow <[email protected]>
QCBase: function for iterating featuremap, MissedCleavages: new metric for counting missedCleavages, no tests or exceptions

870b313f391e93029de02f60c3fec3d9c2596a53 authored over 5 years ago by swew98 <[email protected]>
[INTERNAL] minor optimization in spectrum generation for nucleotide sequences

0daa6841e959faebf761f4fe9f67e74b57d45680 authored over 5 years ago by Hendrik Weisser <[email protected]>
[FIX] add option to skip existing spectrum references during reannota… (#4018)

* [FIX] add option to skip existing spectrum references during reannotation

* update pxd

5eaf345dcb0fb2271ad23ee4ec8f20df7c5a09c5 authored over 5 years ago by Timo Sachsenberg <[email protected]>
[COMMENT] updated author information

54f415d6207d1b031d953f0c5bb091b26f088b28 authored over 5 years ago by Hendrik Weisser <[email protected]>
[FIX] use 'boost::regex' instead of 'std::regex' to support older compiler (GCC 4.8)

8cc578b29be65b03549daf8b0fe7cc427387e901 authored over 5 years ago by Hendrik Weisser <[email protected]>
[NOP] removed some extra line breaks

8aa1e968b1825125cea2a9b2f03ced1a91f53b32 authored over 5 years ago by Hendrik Weisser <[email protected]>
cleaned the cpp

ceea8b105d072383b063ec28e677e54cddd1c3c0 authored over 5 years ago by Dominik Sebastian Schmitz <[email protected]>
changed the hash search, write is_contaminant into pepids instead of feature, added struct

2b68227e1a6359896f518de1605357e10e90acd0 authored over 5 years ago by Dominik Sebastian Schmitz <[email protected]>
==operator const, <<operator inline, destructor virtual

4bf1223692fa9795b10f76d4d32b8f40b9400ed3 authored over 5 years ago by swew98 <[email protected]>
Feature/sql fix (#4017)

* [FIX] fix chromatogram reading by index

* [TEST] add tests

df0e039151a372ae3e8b034a404cd4df916bec57 authored over 5 years ago by Hannes Roest <[email protected]>
[FIX] forward declarations (#4015)

* [FIX] forward declarations

* Update LayerStatisticsDialog.cpp

96311e74fed1e07a538c97e71885db4658c125d5 authored over 5 years ago by Hannes Roest <[email protected]>
Merge pull request #3993 from timosachsenberg/fix/ResidueDB

Make ResidueDB and ModificationsDB thread-safe

f540a23a6ea3325a630ccb795f1b86097ac5652c authored over 5 years ago by Timo Sachsenberg <[email protected]>
[API] moved nucleotide functionality from class 'TheoreticalSpectrumGenerator' to new class 'TheoreticalSpectrumGeneratorNA'

dcb360e2cf28073f5906e64fc7cd833aacd26e2b authored over 5 years ago by Hendrik Weisser <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into feature/TDdeconv

71a0c249d2f086ec87d399b5eee79d23a3ba031a authored over 5 years ago by JeeK <[email protected]>
requested changes, readibility, docu, operators for TEST_EQUAL

2b8751a2336e51e884154eb36498a4f8db3720cd authored over 5 years ago by swew98 <[email protected]>
merge from develop

526933334833dc9f8f2969d1fcca8afd1b893497 authored over 5 years ago by jschmacht <[email protected]>
MZCalibration vers2

235a6ae790db38df02a17ece66fe25d6d3fee34a authored over 5 years ago by jschmacht <[email protected]>
Merge pull request #4016 from hroest/feature/fix_lowercase

[FIX] make it work for lowercase sqmass files

b591ebc7e9387d0496e9572ec23614f9a4a54443 authored over 5 years ago by Timo Sachsenberg <[email protected]>