Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/OpenMS

The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS

tabs to spaces, little docu, conflict resolved

5c20a324ff843a5daa14688e5511530ed58178e5 authored over 5 years ago by TomW <[email protected]>
merge conflict

34f3fd96778f05ae6fd54ecb12c0cb500bb77992 authored over 5 years ago by Patricia Scheil <[email protected]>
sort includes

b353a601f3ff8662d1457cab64a0b471e74eb540 authored over 5 years ago by Patricia Scheil <[email protected]>
added missing bracket in MSExperiment_test

b6f2951a16642e1f18321d2b34eb3776fe37b93a authored over 5 years ago by TomW <[email protected]>
Merge pull request #51 from pscheil/fixCompileErrorMSExperiment_test

added missing curly bracket in line 1216

ca9c43228b6193a89607af8d0fff5b7a30cdbddb authored over 5 years ago by Chris Bielow <[email protected]>
added missing curly bracket in line 1216

4e6a38a201a5846db9f1eb254e20b0cf019c44f1 authored over 5 years ago by Patricia Scheil <[email protected]>
complete test, fix MSExperiment_test

45918f27b9f0ce12030088c5cf41dfd4087c7303 authored over 5 years ago by Patricia Scheil <[email protected]>
[FIX] PQP & OSW SQLite bugs (#4065)

* [FIX] PQP reading fix

* [FIX] OSW writing fix

* [FEATURE] Refactoring of internal transi...

83a9b4c2c1c65aaf3d286e66a9db4f2b15d939bc authored over 5 years ago by George Rosenberger <[email protected]>
parameter fixed

e52ada5cc0f6f056bbab42a5a474a5b6e9eae194 authored over 5 years ago by kyowonjeong <[email protected]>
parameter fixed

4a19fc95b495cd5a6fdc870d09cbf8c6daceb384 authored over 5 years ago by kyowonjeong <[email protected]>
parameter fixed

bd4ff8392b1d75ccca1c57d321122ca8d9efbe42 authored over 5 years ago by kyowonjeong <[email protected]>
[INTERNAL] OPXLHelper: style change

718587dbfa9094d82c7b44f0a8d3737d82f52782 authored over 5 years ago by enetz <[email protected]>
[TEST] added tests for new OPXLHelper functions

c42f8f9794ec5161a8583a19f468fbc9554ca23c authored over 5 years ago by enetz <[email protected]>
[FIX] OPXLHelper: added checks for empty vectors and strings

70817b86b6d9c1cdd47082c2e2e26c074926dcc3 authored over 5 years ago by enetz <[email protected]>
[TEST] updated test files to MetaValue fix

59e0e5ae2541afd2db1dae82936cf8db2d43bffb authored over 5 years ago by enetz <[email protected]>
[FIX] xQuestXML file parsing: fixed an inconsistent MetaValue

54f3e017f4c9a220463bde658f4290f5d37710b6 authored over 5 years ago by enetz <[email protected]>
create new spectra for test, add exception to documentation

9faaf8ff9b65172e732d7847e6c105c1136c38ed authored over 5 years ago by Patricia Scheil <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into feat_matchediterator

d40060c6da914f8a840ff1eda06a719fcccc9d92 authored over 5 years ago by Chris Bielow <[email protected]>
dummy version

345f4ebaa60072a09a326b0ffbdc92b840611f80 authored over 5 years ago by chris bielow <[email protected]>
Merge pull request #48 from dominikschm/QCTool

added metrics to topptool

95e5e7e55ef1cd316920a98be824e1e1a16c90d4 authored over 5 years ago by Chris Bielow <[email protected]>
Merge branch 'develop' into QCTool

7aa6f69883f934ca564e675d522fd52ea9ea6f33 authored over 5 years ago by Chris Bielow <[email protected]>
Merge pull request #50 from Waschi97/feature/QC/TOPPTool/writingMzTab

[FEATURE] writing MzTab in QC

7839ce8496afb67b2dee1a98fcfa0c946554e261 authored over 5 years ago by Chris Bielow <[email protected]>
flag to StringOption, exceptions documented, mower in lambda, ions in theoretical spectrum according to fragmentation method, todo: fix incomplete/corrupted test

46c0f07bd61274db7741a319e4ac66185619639c authored over 5 years ago by Patricia Scheil <[email protected]>
next set of changes

b6bbdf0172b858940955796eb262bc40066c50f0 authored over 5 years ago by TomW <[email protected]>
Update MorpheusScore.h

2a27f0ce46699d81b83f6620d0b9323bf538bcd2 authored over 5 years ago by Chris Bielow <[email protected]>
description changes

852ce072631f749e0c0c2b48a3ffb022025687f0 authored over 5 years ago by TomW <[email protected]>
applied changes

763659d088732bf4588b39ea7da9460b251b2d88 authored over 5 years ago by TomW <[email protected]>
TOPPTool is writing MzTab, TIC in meta data, fmaps are no longer saved

1dfaec5b3f2e3a657d1b631c9dfbe922624055ab authored over 5 years ago by TomW <[email protected]>
includes shifted, noop

95d975d7d5703c4f644ab996e9ebac3882988bf4 authored over 5 years ago by swew98 <[email protected]>
added empty line

61f6b9c6647604905959ce8f54281d7466366158 authored over 5 years ago by Dominik Sebastian Schmitz <[email protected]>
Update Param (#4062)

5eef63a944c26e07c3399a414b06b86b666af429 authored over 5 years ago by Oliver Alka <[email protected]>
Merge branch 'feature/TDdeconv' of https://github.com/JeeH-K/OpenMS into feature/TDdeconv

5650b45f78117ed4afb95413ddbe020b0511e6df authored over 5 years ago by JeeK <[email protected]>
parameter fixed

6fb68299d803263b7edab3e3d17707af62250d6c authored over 5 years ago by kyowonjeong <[email protected]>
parameter fixed

9f28d46fd7def6abf80a5581fe229e8736b56b4d authored over 5 years ago by kyowonjeong <[email protected]>
[TEST] added test dependency to third CometAdapter test

33e69b4413bd295128a2ebf262b80ef0ee9c53df authored over 5 years ago by enetz <[email protected]>
charge assert computed and piptidehits charge

9679130cc037fbd20a1595d7d86cd47af32f9544 authored over 5 years ago by swew98 <[email protected]>
mergeconflict

d37d8cb839ac0690fc04cf9ed0fca50b4f938b3d authored over 5 years ago by swew98 <[email protected]>
efficient variance, struct members initilizes with zero

803099dffe3f137720583ee14ad7df7fe184c6b0 authored over 5 years ago by swew98 <[email protected]>
[INTERNAL] changed string variable to bool

562cab09301df51e1dba633bc4c31caa753e38bb authored over 5 years ago by enetz <[email protected]>
min max charge for feature added

32d6305b82fe530c344f6708cbe253b70695766b authored over 5 years ago by kyowonjeong <[email protected]>
min max charge for feature added

c30d713812424b302ffc6b645b37e68ac26145ca authored over 5 years ago by kyowonjeong <[email protected]>
few bugs

8bca9efff6e2ee270ea25c873da5a08c3c304edd authored over 5 years ago by Leon Bichmann <[email protected]>
increase overlap in high mass area

d2c24f34ada8ef034a02e23cb2a1d3f5558a6b95 authored over 5 years ago by kyowonjeong <[email protected]>
Fix bug on writing result for exact mass search

4a369867578acbbb394ce9212ac89dcd923eca8f authored over 5 years ago by JeeK <[email protected]>
increase overlap in high mass area

e93b884e124035e54cb3da7a7981a87fd4c10c04 authored over 5 years ago by kyowonjeong <[email protected]>
conversion to ppm, average and variance value in test adjusted

5c7d206258c3cacd862faea25be254e5ceb3276b authored over 5 years ago by swew98 <[email protected]>
Merge remote-tracking branch 'JeeH-K/feature/TDdeconv' into feature/TDdeconv

f793df4c001c616b5b71838d9d922fbe578aa4af authored over 5 years ago by kyowonjeong <[email protected]>
increase overlap in high mass area

9fb7eaf9cdace3c1f1cae98ceb2d7f0be5389a31 authored over 5 years ago by kyowonjeong <[email protected]>
before library

5298cf483fad322aa037187723e1600745040fa5 authored over 5 years ago by Leon Bichmann <[email protected]>
set python path

eadd85db3b2055eb4dbe0c22966658fae86d6ada authored over 5 years ago by Leon Bichmann <[email protected]>
Input file as feature result and fix bug on output.

728803bc485c9744e3e445d6f26fdf918280ed57 authored over 5 years ago by JeeK <[email protected]>
[TEST] updated IDFileConverter_16 test, now correctly parses Protein N-term mod

4c6f0b13623b493735250e4b655e7ccc5991fada authored over 5 years ago by enetz <[email protected]>
[TEST] CometAdapter test for Protein N-term Acetylation

44d6cc6487c28c88ccd2cd3c3342158737c8f009 authored over 5 years ago by enetz <[email protected]>
[FEATURE] CometAdapter search for Protein N- and C-term mods

7474bb19c01e021319847be2f50c3f46e0f5a12d authored over 5 years ago by enetz <[email protected]>
[ADD] MetaInfo tables

1e0af35855869251678e2187d245922b4787554c authored over 5 years ago by oliveralka <[email protected]>
[UPDATE] basic DB structure and creation

0b0ea6cc11e67fa6367bc1f505a619b164537cc5 authored over 5 years ago by oliveralka <[email protected]>
Minor documentation update (#4057)

db0445a15466cc7cd945f9a7aef99c7cc6d73367 authored over 5 years ago by jpfeuffer <[email protected]>
merge #4058

c64930b54450ad4ea69a4881d8e5379d6f99d22f authored over 5 years ago by Lars Nilse <[email protected]>
[INTERNAL] simplify code, rename parameters

09af4a6146d8113acef806539807c0c70f43be39 authored over 5 years ago by Lars Nilse <[email protected]>
small header

286f5358bff5d14b05423cdd8fe4f9dd946711f0 authored over 5 years ago by Leon Bichmann <[email protected]>
Merge pull request #4056 from OpenMS/revert-4047-feature/mzrt2mzTab

Revert "columns for mz and rt for individual feature handles to mzTab"

d5c79ae24208872e77113e35c8542000858c990b authored over 5 years ago by Hannes Roest <[email protected]>
Revert "columns for mz and rt for individual feature handles to mzTab (#4047)"

This reverts commit ce045a7133eef7947070a54f1b1ba1c7000b29ee.

9cd3e81c24ab5ebea833807b309591f633ce918e authored over 5 years ago by Hannes Roest <[email protected]>
[TEST] fix TOPP test

e32f13534e85cdb73ab12f8210bb4fe7f8b9a79b authored over 5 years ago by Lars Nilse <[email protected]>
ropenms script

4e1ff42e7c122bca09880aa54e9bd6d1d0776a96 authored over 5 years ago by Leon Bichmann <[email protected]>
fix typo from previous PR 4047

bb85bd54bf6245a78ceb5de857fbf66ebbd6337f authored over 5 years ago by Lars Nilse <[email protected]>
[TEST] resolve conflict

bdac5f25ba6a444fa3b19880e8d81a512c18f21e authored over 5 years ago by Lars Nilse <[email protected]>
cleared up some code duplication

44993aefe30f9b5f9964695495ce7d81acc4a206 authored over 5 years ago by TomW <[email protected]>
[TEST] fix TOPP test

c157a521fa2a8d6d583c12076beb85884c045e0a authored over 5 years ago by Lars Nilse <[email protected]>
[INTERNAL] upadte PRIDE ontology terms

b6e91cc9fb919f7ed3b5cf30018d3014b113a25f authored over 5 years ago by Lars Nilse <[email protected]>
Merge pull request #4053 from cbielow/fix_doc_sse

minor

3c158d8bed3b631af18e57260adae4be4264d526 authored over 5 years ago by Chris Bielow <[email protected]>
Merge pull request #4037 from oliveralka/refactor/AssayGeneratorMetabo

[UPDATE] AssayGeneratorMetabo

fe2b08a40fc3c7b14a7e474cd87b0ed61534cfda authored over 5 years ago by Hannes Roest <[email protected]>
PeptideIndexer now can add UIDs to PepIDs (flag -addUID), QualityControl maps PepIDs and copies MetaValues from FeatureMap to ConsensusMap

15efcde84199ad4b72585554a15b8b4375b8b58f authored over 5 years ago by TomW <[email protected]>
merge

edfad3476e8ae7e19fae7b0c27d47ad534a8f345 authored over 5 years ago by Chris Bielow <[email protected]>
x

c0b9cae1e7ded6e4be45c3be246e713a5fa3345b authored over 5 years ago by Chris Bielow <[email protected]>
merge

8d38c331b812677fa656669d3fa8f9a11c27c80c authored over 5 years ago by Chris Bielow <[email protected]>
[DOC] install params; minor SSE changes

12b0a9beee5513ca9a02666338e915d6d183d6c9 authored over 5 years ago by Chris Bielow <[email protected]>
fill spectra_ref in PEP section of mzTab

ed132070c8ecac776275f0fbc9a9f220f7485ae4 authored over 5 years ago by Lars Nilse <[email protected]>
columns for mz and rt for individual feature handles to mzTab (#4047)

* [INTERNAL] write mz and rt from feature handels in cXML to mzTab

* [TEST] fix TOPP test

...

ce045a7133eef7947070a54f1b1ba1c7000b29ee authored over 5 years ago by Lars Nilse <[email protected]>
Add unimod.xml for DBSearchDeconvMass

64bf12114ab2ec4b8e88c94206f22972698f1cc7 authored over 5 years ago by JeeK <[email protected]>
comments, catch in toptool, ppm conversion

628954620de2ce2053b94c1d08543139a5d400ca authored over 5 years ago by swew98 <[email protected]>
Merge pull request #4052 from lars20070/fix/TOPPView

update gradient only for last layer

59457b2d9695428ed2be5c2e38b444f3d517f09b authored over 5 years ago by Lars Nilse <[email protected]>
Merge branch 'develop' into feature/TDdeconv

08d2ed676e765ef83d33c32d6b2984f13a39939f authored over 5 years ago by JeeK <[email protected]>
Merge remote-tracking branch 'origin/feature/TDdeconv' into feature/TDdeconv

4e546d3b8d28ef2011ab75a43978bcb672871c61 authored over 5 years ago by JeeK <[email protected]>
Done with algorithm.

Polishing in progress...

781e26b0634bcb33438afa97d612321ce2234c4c authored over 5 years ago by JeeK <[email protected]>
check for empty, update gradient

2926409b9689a58c67d9dac638c9c5c32692c9fd authored over 5 years ago by Lars Nilse <[email protected]>
[ADD] further const, move

9e6143aee3297d547ca9761c9ece4b2442c14ace authored over 5 years ago by oliveralka <[email protected]>
Done with algorithm.

Polishing in progress...

ee9b9ff915274560672d2b788609e7c828246c2e authored over 5 years ago by JeeK <[email protected]>
add switch for new optional columns

a0d7020aefab33c5dd4821ae36937c9c72f7b655 authored over 5 years ago by Lars Nilse <[email protected]>
exception with empty spectra

b369d95c232674a37072494c4c6c8d987cb25d46 authored over 5 years ago by swew98 <[email protected]>
Correction1

cecf7d0d863c0bac8d30f9c8a1c471e94438c913 authored over 5 years ago by jschmacht <[email protected]>
update gradient only for last layer

4014a1aea23803c30a8f947b8ad42a1cf57679df authored over 5 years ago by Lars Nilse <[email protected]>
[INTERNAL] correct number of scores, fixes empty column header problem

53ecdfa69fd30363c048908ea6e782de26017d3e authored over 5 years ago by Lars Nilse <[email protected]>
mass overlap removal

ad90765d02fd000c832ce699ae3420fea0399bf8 authored over 5 years ago by kyowonjeong <[email protected]>
Add first sketch of an SQL-based OMS file for the new ID datastructures.

382c95b6f53b2c6d38b5e5694713e0066ac80393 authored over 5 years ago by Julianus Pfeuffer <[email protected]>
Feature/spellcheck (#4051)

* [FIX] const-correctness

* [DOC] doc fixes / spellcheck

* [DOC] doc fixes / spellcheck

...

0847e5e6ff2c32fd7259fe639141ce1d8ba595a2 authored over 5 years ago by Hannes Roest <[email protected]>
[ADD] move, const auto& iterator

854739d95a5ac5c1725f5eb0dd2accf103255bc4 authored over 5 years ago by oliveralka <[email protected]>
[FIX] add / fix move constructors

3fb9727da01d5e0c3d8e92b7f6285fcdf33fe6f2 authored over 5 years ago by Hannes Roest <[email protected]>
[FIX] enable test for clang/gcc

97a7dc4d493882c14bf35c766c308bc72ec83cdc authored over 5 years ago by Hannes Roest <[email protected]>
[FIX] declaration

3c04fcd497e7a83482e21a930f4102914181d068 authored over 5 years ago by oliveralka <[email protected]>
[ADD] struct CompoundSpectrumPair (for python bindings)

14d7b1212592720bc5d511f933f9660f87fed14d authored over 5 years ago by oliveralka <[email protected]>