Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/OpenMS

The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS

changed table

bb3cfe064db91313c9ed21a69e9a89a316726973 authored over 5 years ago by Dominik Sebastian Schmitz <[email protected]>
MatchedIterator, flag auto, warning missing if there is no entry in the proteinID

a2eeea3637b6b575f8d4f5d7710cd4e1b44435bf authored over 5 years ago by swew98 <[email protected]>
Merge pull request #62 from Waschi97/feature/QC/TOPPTool/MS2_ID_Rate_in_MzTab

added MS2_ID_Rate to MzTab Meta Section

2a2376d20e073030ccc77a4a9cac5ed0a055e329 authored over 5 years ago by Chris Bielow <[email protected]>
Update QualityControl.cpp

83759e7b4ff2bb077f59cfe8a7797a3258d80410 authored over 5 years ago by Chris Bielow <[email protected]>
additional MetaValues peak_max & peak_sum

620f027e5368bf08552f40fb34a6232d29e5af6a authored over 5 years ago by TomW <[email protected]>
Add missing elements

bb63e22a69bf3793588457161796ffef61e8b34d authored over 5 years ago by bblum9 <[email protected]>
3 more meta values (hidden in TopNOverRT for now)

735b97b9339392ca644392cbafac41501dbd2f88 authored over 5 years ago by Chris Bielow <[email protected]>
UID as string

74355582f37dd4b2f71cd1784f75ff5aef7c76d7 authored over 5 years ago by Chris Bielow <[email protected]>
fix bug (segfault when #peaks in window is larger than peak_count

eec71ce23fbc341fb8db27bffe73b3dbf2f1a0ab authored over 5 years ago by Chris Bielow <[email protected]>
added MS2_ID_Rate to MzTab Meta Section

22ef6f05ae94bde1ddd400796707daf8a2fed579 authored over 5 years ago by TomW <[email protected]>
[INTERNAL] correct code style

6c1ef20583a423ec392f3090b92213dcc7963b34 authored over 5 years ago by Lars Nilse <[email protected]>
fix log

f18df669684641cc8ada4c59f35c73861959f342 authored over 5 years ago by Chris Bielow <[email protected]>
fix compile errors and warnings on Windows

4cc33b8c23206ac0155f669aa2fc25958709a536 authored over 5 years ago by Chris Bielow <[email protected]>
Fixed after pierce thermo standard

c66911747cd820d1a5b9be7d10b8e41203661367 authored over 5 years ago by kyowonjeong <[email protected]>
added workflow

f9bd731390fd5a38c537253da50051f065e37dd2 authored over 5 years ago by Dominik Sebastian Schmitz <[email protected]>
OPENMS_LOG_WARN

4008755e77520c5ade17c598d9bc4d7268eb7be7 authored over 5 years ago by swew98 <[email protected]>
[TEST] fix TOPP tests

39566aa75a705badc69202fb933b8b4398b43654 authored over 5 years ago by lars20070 <[email protected]>
[INTERNAL] remap column in consensusXML export

03b2df1e04fe705c76202d10ac24913f8e2d977d authored over 5 years ago by lars20070 <[email protected]>
[INTERNAL] define addUserValueToRowBy

f924d146250baec4b6eec6fae95ea81638a43265 authored over 5 years ago by lars20070 <[email protected]>
[INTERNAL] remap column in featureXML export

02038cd2e36038d7ce4bc915ceeab989489ae903 authored over 5 years ago by lars20070 <[email protected]>
[API] new method for remapping column

a24945b11864f8ceda99542e75dab775ead037e0 authored over 5 years ago by lars20070 <[email protected]>
Merge pull request #4092 from oliveralka/fix/SAAparams

[FIX] SiriusAdapterAlgorithm - precursor_mz_tolerance_unit

3a67a02d0c5adffd6b727336a388aedc9cae3355 authored over 5 years ago by Hannes Roest <[email protected]>
[INTERNAL] minor code style changes (const, by reference)

467fa0898e616717241b252fd7781a484f2d9aaf authored over 5 years ago by lars20070 <[email protected]>
merge

d75229d52aa9dd3e403811d658b149c5123f8e5f authored over 5 years ago by Chris Bielow <[email protected]>
fix compile errors

161f576422a4fc39997d783dcc299397641a9095 authored over 5 years ago by Chris Bielow <[email protected]>
disable HDF5

b27de3ed97e843037bcacbefd308dc5b69c9f842 authored over 5 years ago by Chris Bielow <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into develop

d04fef014042d9ebb2051c07ef8dc43b26944c56 authored over 5 years ago by Chris Bielow <[email protected]>
Merge pull request #4054 from lars20070/fix/spectra_ref

spectra_ref column for PEP section in mzTab (MzTabExporter)

0de2f3557656c7b3763f7c7b51f2a78c014d6456 authored over 5 years ago by Chris Bielow <[email protected]>
Merge pull request #61 from Waschi97/MZcalibration

[FEATURE] QC metric: MzCalibration

c6afbda639f3e21e30c078363cbbe9b24fc8f7e2 authored over 5 years ago by Chris Bielow <[email protected]>
Update MzCalibration.h

740dbbcd0a35f34729cc92c50707297eb52be483 authored over 5 years ago by Chris Bielow <[email protected]>
[DOCU] extend docu for map_run_fileidx_2_msfileidx mapping

eb8fcfe2720e8a9cc20ddb29479a67cb281f0aa7 authored over 5 years ago by lars20070 <[email protected]>
[FIX] typo

45839c9fd537a0b64bb64c95dfba695d3c64014b authored over 5 years ago by oliveralka <[email protected]>
applied PR changes

b8a3770530681d209faa9edeb9a785921b48386f authored over 5 years ago by TomW <[email protected]>
Merge branch 'fix/spectra_ref' of https://github.com/lars20070/OpenMS into fix/spectra_ref

580bf80f93c9731018424cafb896f937b6eb416f authored over 5 years ago by lars20070 <[email protected]>
[DOCU] add docu for exportConsensusMapToMzTab() method

dce1dfd0a3ec7df5b2df689d0dbe762a42b0c8e1 authored over 5 years ago by lars20070 <[email protected]>
Update MzTab.h

04c45ddd24eb5bb466ae83e1ff1170b5cd62e901 authored over 5 years ago by Chris Bielow <[email protected]>
extended the tutorial

e5ab23351a5142213e2f77a7daf83a7c250ae06d authored over 5 years ago by Dominik Sebastian Schmitz <[email protected]>
Docu changes

09b72fbdd1585538c3bb523343f58e6e4bd3d23d authored over 5 years ago by TomW <[email protected]>
[DOCU] add docu for exportIdentificationsToMzTab() method

2acccc769a747b0b781bf78b9a0d3d4a7b93009d authored over 5 years ago by lars20070 <[email protected]>
[TEST] fix TOPP test

59202988eeff9d6cec9a3397d67b548fd78e0264 authored over 5 years ago by lars20070 <[email protected]>
merge develop

ec2c39f08206260f12e4825ac7bcd701c1439594 authored over 5 years ago by lars20070 <[email protected]>
[FIX] feature_only, precursor_mz_unit param

97d2d8ee3dc728751a6ed82e241d73d8eef6e70b authored over 5 years ago by oliveralka <[email protected]>
[FIX] readability

99bdbd9d84871f3f17e571f9870bcbb25e6ddc33 authored over 5 years ago by oliveralka <[email protected]>
Merge pull request #4079 from lars20070/feature/mzrt2mzTab_3

columns for mz and rt for individual feature handles to mzTab

a7201f06738e803673594fc41dcfe7196777d991 authored over 5 years ago by Lars Nilse <[email protected]>
Merge remote-tracking branch 'upstream/develop' into fix/SAAparams

efc862357cc0e43cfeef06a72e5fa1c3a59beee5 authored over 5 years ago by oliveralka <[email protected]>
[FIX] test

(cherry picked from commit acaa62aa19b858eec01720325f950a508d906ec9)

74fc6f7a8309f6a375ff6ec9575c7cd65aefea29 authored over 5 years ago by oliveralka <[email protected]>
MzCalibration works without MzML, gets called in TOPPTool

ec8c0e0b1aacad210a95ee5165b708abfff18f4e authored over 5 years ago by TomW <[email protected]>
added qualitycontrol

b04a502a732d4048860455b4f5ad0ccbf213796d authored over 5 years ago by Dominik Sebastian Schmitz <[email protected]>
merged from develop

852e5e7e75cc7ae76e1386d6d24a7ed866bc4b45 authored over 5 years ago by TomW <[email protected]>
compile error fixed

5032a37618ac85b298d629de739e9b9f6d88ca79 authored over 5 years ago by TomW <[email protected]>
Merge branch 'develop' of https://github.com/cbielow/OpenMS into develop

e31dd4101f24a4378636845e51296995dfadeb5c authored over 5 years ago by TomW <[email protected]>
trying to fix UID Bug

a794d6ec8039ebc79426544bdfdacbd7294b02ab authored over 5 years ago by TomW <[email protected]>
Feature quantity removed

d18a201e6fc0bd23d518749db2cfb0ce68536062 authored over 5 years ago by kyowonjeong <[email protected]>
Merge pull request #60 from swewagner/toppOutput

Topp output

8e4f1eaf671d1fa6a0a32816066adffdd3226f11 authored over 5 years ago by Chris Bielow <[email protected]>
Update QualityControl.cpp

1f47b7325face0d5b58599bf9f7e63b4d9bfb265 authored over 5 years ago by Chris Bielow <[email protected]>
Update FragmentMassError.h

63b450d3d73aec168d46c527631723e1d851532f authored over 5 years ago by Chris Bielow <[email protected]>
finished naming of the metrics

94ba0850a2e61b03b79d429744a37cb635112c7d authored over 5 years ago by swew98 <[email protected]>
Feature/hdf5 (#4086)

* [DOC] documentation

* [BUILD] add connector

d070dde8c5df68678f82faf9417159c895f34d6d authored over 5 years ago by Hannes Roest <[email protected]>
[FIX] Do not write zero intensity features in FFMetabo (#4087)

* [FIX] Do not write zero intensity features in FFMetabo

fixes https://github.com/OpenMS/Tuto...

52788555f10c3dcbf0a9574c3f79e27cf56cba8d authored over 5 years ago by jpfeuffer <[email protected]>
Feature quantity removed

22091d52a17c0c1db2675d3877d1f0e99857cd9a authored over 5 years ago by kyowonjeong <[email protected]>
cosine threshold calculation bug fixed

b96a496a2e20d66ff384550f871e9c8a3bb792ee authored over 5 years ago by kyowonjeong <[email protected]>
Merge pull request #4085 from biosustain/style/AQM_rule_of_zero_and_tests

[STYLE/TEST] AbsoluteQuantitationMethod: rule of zero, more tests

2af1147c61203480475d990265981051ffd4cc0f authored over 5 years ago by jpfeuffer <[email protected]>
implement getName in metrics (tic and topNoverRT missing)

55772a459651c4ff3bdbb6d104a0dd5e48a7a202 authored over 5 years ago by swew98 <[email protected]>
feat: reorder class' members by size

33d17937e77f3d9de9d4fe3c2984aabe1c5520ed authored over 5 years ago by Pasquale Domenico Colaianni <[email protected]>
QCBase,QualityControl: logwarn if metric cant run; metrics: iterateFeature without warning

62cdd139b7fe4715827ffc9b5b0ed9cf1b442a62 authored over 5 years ago by swew98 <[email protected]>
Merge pull request #4076 from cbielow/feat_matchediterator

[FEATURE] MatchedIterator (finding matching pairs of peaks fast)

a8e026c1489cd0fb8d0c346696ab173a7eba5b7c authored over 5 years ago by Chris Bielow <[email protected]>
quick fix for one-off problem (#4083)

* quick fix for one-off problem

* [FIX] test

e8b3138c30b43c8cf99365ea9d1dcc703b95f7d9 authored over 5 years ago by Timo Sachsenberg <[email protected]>
NucleicAcidSearchEngine: include isotope offset in mzTab output (#4084)

* [FEATURE] NucleicAcidSearchEngine: include isotope offset (cf. parameter 'precursor:isotopes')...

7d8f12b6392a37f40d0d3203279679b30732453f authored over 5 years ago by hendrikweisser <[email protected]>
style: rename LogStream macros to avoid name clashes (#4082)

* style: rename LogStream macros to avoid name clashes with other libraries

* fix: remove unu...

c6f9e0d9c70ae99d46be5f47b612f75f48e30f40 authored over 5 years ago by Pasquale Colaianni <[email protected]>
test: AbsoluteQuantitationMethod: default constructor, copy constructor, copy assignment operator

f2ccf6df943af72904148c7372bd385ee44c48d8 authored over 5 years ago by Pasquale Domenico Colaianni <[email protected]>
style: AbsoluteQuantitationMethod: rule of zero, in-class initializers

74119d0aaccfdfb15c38333d9a2d5ed289334373 authored over 5 years ago by Pasquale Domenico Colaianni <[email protected]>
Use cast to silence clang-tidy in Fileinfo

4a6a09bbbd7b04686e975ffc6e1d80a14e450134 authored over 5 years ago by Julianus Pfeuffer <[email protected]>
hint if metric needs some extra arguments and could not be executed

04302faa81d46f29a2c0d8275af257dc13ac19b3 authored over 5 years ago by swew98 <[email protected]>
TopNoverRT: changed + and - to 1 and 2, QualityControl: added consensusMap and featureMap output

7b24c01c35da6f04b2e788c2f40252b2fc7eda7a authored over 5 years ago by swew98 <[email protected]>
cosine threshold calculation bug fixed

99dc980c8128edc5302408c2eb11fe30311b2e5d authored over 5 years ago by kyowonjeong <[email protected]>
[DOC] better error description

a286afbe2273ba136e376b3e1d5f244bd370c917 authored over 5 years ago by Hannes Roest <[email protected]>
codacy fixes

cf271c87d395f9ae44a72db722c514e4ce156918 authored over 5 years ago by Chris Bielow <[email protected]>
fix tests

1fe9aa7caf9141fb664a84efcb244b5a6387d725 authored over 5 years ago by Chris Bielow <[email protected]>
fix warnings

a9ed1f779a29c425f04bbc6b0b408a54c1c17035 authored over 5 years ago by Chris Bielow <[email protected]>
Merge pull request #4070 from hroest/feature/hdf5

Feature/hdf5

32ba2a50d3a29d469144bb1cc0f106b3412b9787 authored over 5 years ago by Hannes Roest <[email protected]>
parameter fixed

b56cac6d435c490c02b28a5869b0e41267a36ce6 authored over 5 years ago by kyowonjeong <[email protected]>
[FIX] fix tests

aba4d5b626ddc05933d28741039fb6b588b542f3 authored over 5 years ago by Hannes Roest <[email protected]>
fix test

bd7588786928dbafdd5c5845fa39d554a288ea90 authored over 5 years ago by Chris Bielow <[email protected]>
[DOC] add documentation

8dc486ce362c93b7dbbfd1cc1b67860353182c83 authored over 5 years ago by Hannes Roest <[email protected]>
Fix tests

aa7f79133bb7fe91875e8d9b64cbd74b4eee8f49 authored over 5 years ago by Julianus Pfeuffer <[email protected]>
parameter fixed

77ece0cffec129f038d69f39aadbe12a685e71ee authored over 5 years ago by kyowonjeong <[email protected]>
[INTERNAL] make use of export_subfeatures flag

ca5a3bccab00c22b3eb7f21cbf468c91ee1af2a2 authored over 5 years ago by lars20070 <[email protected]>
Merge pull request #59 from swewagner/toppFix

Topp fix

7ac235f7144e70bfe6f3e97ef7b819a4b95f6638 authored over 5 years ago by Chris Bielow <[email protected]>
fixed error because of empty peptideidentifications

70dd0ecffa6fc613e522313693f1d45ebac345ff authored over 5 years ago by swew98 <[email protected]>
[TEST] fix MzTabExporter TOPP test

82562c13549cb884f29dcc3e2cf100d962085219 authored over 5 years ago by lars20070 <[email protected]>
[INTERNAL] fix missing column header

3810d353a3077ba518bf983c10d5a42a444a7d85 authored over 5 years ago by lars20070 <[email protected]>
[INTERNAL] export (mz, RT) of individual features to mzTab, new parameter to switch this feature on/off

686eeacbd45530af1e3717cb250e81f08d218700 authored over 5 years ago by lars20070 <[email protected]>
added include

dfeffe0ccc29adb6c157f084c15decea7cb17304 authored over 5 years ago by Chris Bielow <[email protected]>
[DOC] improvements

e42d251de7064acc876a2d4ed23e1e7fa209097c authored over 5 years ago by Chris Bielow <[email protected]>
Merge branch 'feat_matchediterator' of https://github.com/cbielow/OpenMS into feat_matchediterator

f62343bc2d5106ad1da40a52542bce8357016f2a authored over 5 years ago by Chris Bielow <[email protected]>
add test

9c86c46f305f715298a54a612e7a6b6813f0c651 authored over 5 years ago by Chris Bielow <[email protected]>
parameter fixed

d62304ff9dc446564eefc130963662a7720f5f68 authored over 5 years ago by kyowonjeong <[email protected]>
Add an additional style test for potential copies in loops (#4071)

* Try adding additional style test.

* Use pass filter

* Update CMakeLists.txt

* Exclude...

048b41cd385aa687af2cd5140a5c27e1a1080557 authored over 5 years ago by jpfeuffer <[email protected]>
[PYOPENMS] simple plotting

4d5a83409755930313d10bcee899acdd2212d289 authored over 5 years ago by Hannes Roest <[email protected]>
[PYOPENMS] check index validity before access

efbb934f575176eda54e765d1e26e7aa277b831d authored over 5 years ago by Hannes Roest <[email protected]>