Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/OpenMS

The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS

[NOP]

062e01afbdb58974079484634ce246d641ed9a33 authored over 5 years ago by Hannes Roest <[email protected]>
[NOP] move function

cbdfaa2dae38c79a96f54b9e893c09058a15b92f authored over 5 years ago by Hannes Roest <[email protected]>
[FEATURE] cleanup, doc

f4d91f89a82411c6612642a12cdb5c72b98894d5 authored over 5 years ago by Hannes Roest <[email protected]>
Update AASequence.h (#4162)

a4898c5f7b166a2e7120b93a34d7029cd2e4cc90 authored over 5 years ago by Timo Sachsenberg <[email protected]>
[FIX] fix some warnings during RT alignment (#4161)

054fb07a898f6723e27ea262b789b0656900b58f authored over 5 years ago by Hannes Roest <[email protected]>
Merge pull request #4160 from OpenMS/jpfeuffer-patch-2

[Feature] Print Stdout/Err of external commands when debug mode is on

0725db2d3d2eb31fc4dfaf7829e05007d286a5a5 authored over 5 years ago by Hannes Roest <[email protected]>
Remove out_type parameters from KNIME nodes to reduce confusion (#4155)

98134a8b55bd819a1243a6c1e3ca767fbc9f1809 authored over 5 years ago by jpfeuffer <[email protected]>
[FIX] Fixed Percolator PTM notation and default svm score (#4159)

2cc676666510fbc4bda4fe02f05de3d0f5ed41bf authored over 5 years ago by MatthewThe <[email protected]>
Merge pull request #4154 from OpenMS/fix/ASAN_iterations

Update AASequence_test.cpp

20d309a0db672b5a9f178a59461e484ede08b665 authored over 5 years ago by Hannes Roest <[email protected]>
Update src/openms/source/APPLICATIONS/TOPPBase.cpp

83336bcc54f9765d77054bf81c8fc6fba88f468b authored over 5 years ago by Hannes Roest <[email protected]>
Update src/openms/source/APPLICATIONS/TOPPBase.cpp

9df13a856484213152766ffa81deb18788162a21 authored over 5 years ago by Hannes Roest <[email protected]>
Print Stdout/Err of external commands when debug mode is on

3c4337a147b84b13fec3962d0afc92475e8187e2 authored over 5 years ago by jpfeuffer <[email protected]>
[FEATURE] move IDFilter params to advanced

20ea1cad90746e1571bb39b1b4bbd66cdc72183e authored over 5 years ago by Hannes Roest <[email protected]>
[FEATURE] add link to online docu

c01ca150adc056077b4c97031924ead66641f467 authored over 5 years ago by Hannes Roest <[email protected]>
automatically warn and close stake issues after two years

6c78f41b8074c84a59cdb8521c9cfb7fa16f93bc authored over 5 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into feature/TDdeconv

8f9ec8fc98f8e2daa8d70ba13220869239ac2c97 authored over 5 years ago by JeeK <[email protected]>
Merge branch 'feature/TDdeconv' of https://github.com/JeeH-K/OpenMS into feature/TDdeconv

ea283713db5ee32b02f27b8cd1b50d02a0b4811e authored over 5 years ago by JeeK <[email protected]>
Add error exception for unable to find column index

d0d3d2b413c6689a30d8bd572477555874824046 authored over 5 years ago by JeeK <[email protected]>
isotope index bug fixed...

7186cb86f95a8cc72b3a78474571e7258a12373a authored over 5 years ago by kyowonjeong <[email protected]>
Added Boost License for cmake modules

934760afcef9b96133051d6bcf8369dd3d022a4f authored over 5 years ago by jpfeuffer <[email protected]>
Remove last traces of WSDL

b5908be6020b4f05188051547d3fd0cae5967be0 authored over 5 years ago by jpfeuffer <[email protected]>
Merge remote-tracking branch 'JeeH-K/feature/TDdeconv' into feature/TDdeconv

02fd158af42fdf66d381b4ecfe3eee21566249b2 authored over 5 years ago by kyowonjeong <[email protected]>
parameter exp updated

3a15ded3899a6bf03c22d2e9a8f03b9f33d93503 authored over 5 years ago by kyowonjeong <[email protected]>
Update AASequence_test.cpp

272c2d49c5093c25dba5ea805d3fa26f891c2f44 authored over 5 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #4150 from MatthewThe/fix/psmfeat-output-format

[FIX-#4140] Fixed PSMFeatureExtractor unknown output format issue.

7314c8b4144ef305e0c33f3ea0ea6249aaba541d authored over 5 years ago by jpfeuffer <[email protected]>
Merge branch 'develop' into feature/TDdeconv

9a4eef581bf51c881a2cbb1a9f7a6d9e943651a4 authored over 5 years ago by JeeK <[email protected]>
jitter as parameter

df8363eafc5eb1f66954633358ec6f72da4cd9b8 authored over 5 years ago by kyowonjeong <[email protected]>
jitter as parameter

21e2494eb499e2c8bedf10e75ab71a59ed33d104 authored over 5 years ago by kyowonjeong <[email protected]>
feature iso charge score added.

b619380cbfa7d5a44c02584b123876cd8e453967 authored over 5 years ago by kyowonjeong <[email protected]>
feature iso charge score added.

3e4970b9fe41c4883a2f55a632d11bf9e4f36fbc authored over 5 years ago by kyowonjeong <[email protected]>
feature iso charge score added.

3db90b76eb2c38b48cc2d462db6e250544a999b0 authored over 5 years ago by kyowonjeong <[email protected]>
output file name change format complete.

1c84e71a68e0a6d04f00fd31544ba4ab3d576ee8 authored over 5 years ago by kyowonjeong <[email protected]>
[FIX-#4140] Fixed PSMFeatureExtractor unknown output format issue. Fixes #4140

405d8223c0c9d02fb30f6f37d726a3d055852c18 authored over 5 years ago by MatthewThe <[email protected]>
Works well for std, complex, oval, and adc.... finally.

154ffce8d02e01965d5a3ab441bdcb200ebf50de authored over 5 years ago by kyowonjeong <[email protected]>
[STYLE] rename `extern` logging objects i.e. Log_debug (#4148)

* style: rename Log_fatal to OpenMS_Log_fatal

* style: rename Log_error to OpenMS_Log_error
...

63994f8a122765e4034e2fbbbc5213a20b03090d authored over 5 years ago by Pasquale Colaianni <[email protected]>
Works well for std, complex, oval, and adc.... finally.

39c32d4bf6b05bdd030974592517f041dcaf3e5a authored over 5 years ago by kyowonjeong <[email protected]>
Works well for std, complex, oval, and adc.... finally.

988aae8cbb46176d5e55cd12c5338c5b79b1b389 authored over 5 years ago by kyowonjeong <[email protected]>
Works well for std, complex, oval, and adc.... finally.

7eba72664b07a42c9c57b008fd4b1efb89d8aadf authored over 5 years ago by kyowonjeong <[email protected]>
Works well for std, complex, oval, and adc.... finally.

f9843900a4fe7a86f94e5c96141cd91c7b604f9a authored over 5 years ago by kyowonjeong <[email protected]>
[FIX-#4141] Fixed PercolatorAdapter missing columns bug in DOC mode. Fixes #4141 (#4147)

38a871db4a26ee9cee525b7276a8e71a240ae619 authored over 5 years ago by MatthewThe <[email protected]>
Cosine between charge intensity vs. Gaussian fit implemented -tested in std and myo

4a4f44d9eccbfd4cf1fc8f931a51fe81ecbd0777 authored over 5 years ago by kyowonjeong <[email protected]>
Cosine between charge intensity vs. Gaussian fit implemented.

f2c3130b6145bb16e24d48e28b759bca4b32e640 authored over 5 years ago by kyowonjeong <[email protected]>
Merge remote-tracking branch 'JeeH-K/feature/TDdeconv' into feature/TDdeconv

6e8a94c6ecb57e52682d5789bdcc2999b411942d authored over 5 years ago by kyowonjeong <[email protected]>
Cosine between charge intensity vs. Gaussian fit implemented.

f19cf8048c973378c7872105e78e62f0943a9f95 authored over 5 years ago by kyowonjeong <[email protected]>
Init isotopes only when needed and not yet init. (#4144)

* Init isotopes only when needed and not yet init.

* Rearranging Compnovo class hierarchy

2b877f15f2b5f33c7f0334eb69bd3b0fc02c0ce3 authored over 5 years ago by jpfeuffer <[email protected]>
Merge pull request #4143 from oliveralka/update/THIRDPARTY_SIRIUS4_b9

Update/thirdparty sirius4 b9

dcce825b817114cd1e26e85cfd72bcd8a1f7ab99 authored over 5 years ago by jpfeuffer <[email protected]>
Merge remote-tracking branch 'upstream/develop' into update/THIRDPARTY_SIRIUS4_b9

afc903e1df2788eb73dd300c57dbf153f8225a35 authored over 5 years ago by oliveralka <[email protected]>
[UPDATE] THIRDPARTY SIRIUS4 build 9

5070fabcb988dcffa073b91d3a9e6bc17f3b86ee authored over 5 years ago by oliveralka <[email protected]>
Merge pull request #4094 from lars20070/fix/mzTabTargetDecoy

rename target/decoy column in MzTabExporter

2d8dcd2a0e4c861d18237b36a53e50c1bb0c0eea authored over 5 years ago by jpfeuffer <[email protected]>
[FEATURE] TargetedFileConverter: Improved support for shared peptides

1a85b877f6ce1804bb6f8f1bf68e65a0a6bc7603 authored over 5 years ago by George Rosenberger <[email protected]>
Merged-in develop

3d3892f06d0592579ee965b1905d55642131532f authored over 5 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #4120 from jpfeuffer/fix/clang-tidy-fixes

[Fix] clang tidy fixes

0fc8765670a0ad625c883f328de60f738f7325a4 authored over 5 years ago by jpfeuffer <[email protected]>
Some more gcc bugs circumvented.

951cce36a425a50bb0488057f3c8996121eab96a authored over 5 years ago by Julianus Pfeuffer <[email protected]>
Last fix?

37a4a75d3939224f65e615958153e2758420bc9d authored over 5 years ago by Julianus Pfeuffer <[email protected]>
Fix another macro and usages

bb7b56eb77e71aa28a872fc7ead92e6773305f60 authored over 5 years ago by Julianus Pfeuffer <[email protected]>
Change some more exceptions after changing the macro.

00bb0ed9d39168c3eba0995c667517bd6f4ad32a authored over 5 years ago by Julianus Pfeuffer <[email protected]>
Fixed incomplete "shadowing variable" refactoring

c205bbad3a0fc9ef7ddf63df6ee2c1ec14f67b42 authored over 5 years ago by Julianus Pfeuffer <[email protected]>
Removed accidental change in FFM. And associated debug code.

44a0479bcbb80109072f964815a32c2458a9cd8a authored over 5 years ago by Julianus Pfeuffer <[email protected]>
Solved gcc false pos warning.

155dd3f10e3df3e6535403e8af4a4f38b0884c74 authored over 5 years ago by Julianus Pfeuffer <[email protected]>
Merge remote-tracking branch 'origin/fix/clang-tidy-fixes' into fix/clang-tidy-fixes

c2a9d102097203ef9fc87e9848eaf0b35236afd1 authored over 5 years ago by Julianus Pfeuffer <[email protected]>
More cleanups and addresses comments.

73d024bc1d617ada795b7499c30e6819d4eb5da3 authored over 5 years ago by Julianus Pfeuffer <[email protected]>
[FIX] always keep order: spectra, features, consensusfeatures, ids in… (#4139)

* [FIX] always keep order: spectra, features, consensusfeatures, ids in layer manager

* Updat...

0e8f737848519fc4b62beba504b6b360c27e583a authored over 5 years ago by Timo Sachsenberg <[email protected]>
[FIX] fix drawing of projections if mz is mapped to x-axis (#4138)

24b4c0b66216d48494b9d8e8a0dbfbeca75c153c authored over 5 years ago by Timo Sachsenberg <[email protected]>
Add icons to visually distinguish spectra, features, consensusfeatures (#4136)

074f9f6278caf8e9e2eb8a15300a909165667720 authored over 5 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into fix/clang-tidy-fixes

4415e53e29f8963543ab12a1da957857e5460c21 authored over 5 years ago by Hannes Roest <[email protected]>
fix PeptideID metavalue mapping (identifier are only unique within a featureMap, not across feature->consensusMaps); solve duplicated PepID problem by using a multimap

d625aa98d6f5447d4d8dee6a573af21f8be53622 authored over 5 years ago by Chris Bielow <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into develop

# Conflicts:
# .gitignore

9f7bac5a1251ae60b62e3a822b6df4f3acca9d30 authored over 5 years ago by Chris Bielow <[email protected]>
Merge pull request #3558 from hroest/feature/aaseq_fixes

Feature/aaseq fixes

5c874d295aaa958f67b81f54ee101ce48b4c9394 authored over 5 years ago by Hannes Roest <[email protected]>
Merge pull request #69 from Waschi97/feature/QC/TOPPTool/ChangeUIDMapToSpecRefMap

QC-TOPP: change uid-map to spec-ref-map

380af62dc6667639bd439840484a7750cdb6e83f authored over 5 years ago by Chris Bielow <[email protected]>
Merge pull request #4135 from OpenMS/fix/vs2015

fix for vs2015

f7c2a0c288605f775bcd9841ef5145a76dcc5f11 authored over 5 years ago by Hannes Roest <[email protected]>
fix for vs2015

bb59003be351091b89349a76b3d94b5c539ebbce authored over 5 years ago by timosachsenberg <[email protected]>
[FIX] docu fix (#4134)

dc39ef9d8451fc7db7edb344dcce93e3dc7dac87 authored over 5 years ago by Hannes Roest <[email protected]>
Merge pull request #4131 from cbielow/fix_osw

Percolatoradapter (AA before and after do not neccessarily exist)

cf7efbc6d7f3278b1e4b022ac58da182e19e4658 authored over 5 years ago by jpfeuffer <[email protected]>
forgot a change

815e9419ab0f2b1c0a7775f09c2d343add347bf3 authored over 5 years ago by TomW <[email protected]>
Update Spectrum2DCanvas.h (#4132)

965ac84f6159d7ff4998acbfcad5f76b6db3a580 authored over 5 years ago by Hannes Roest <[email protected]>
PR changes

8f99a6d40b45cdad535fdb2566dbbc03f558ec43 authored over 5 years ago by TomW <[email protected]>
Revert "[BUILD] travis cache restart"

This reverts commit 89c5cd7f2d9d343b3d63fc6bab18e08dcd969c05.

0091bb3245eb943640beccda7a7c2883f183de6a authored over 5 years ago by Timo Sachsenberg <[email protected]>
[BUILD] travis cache restart

- only build TOPP tools in order to reset the ccache and allow travis to
complete an OpenMS bu...

081cf392937b2cb53eae68d180f17e4c53cc900c authored over 5 years ago by Hannes Roest <[email protected]>
[FIX] use proper id for tab widget

c01291e729e305bc4d4f6af0be00636b0860da85 authored over 5 years ago by Timo Sachsenberg <[email protected]>
fix #4129 (AA before and after do not neccessarily exist)

f90cf86336a09ff76a933b1048361817577e20c4 authored over 5 years ago by Chris Bielow <[email protected]>
Merge pull request #4112 from hroest/feature/peff

[FIX] skip fasta header files, test with PEFF

c3fa62eb2cf9a340d332912f7da3935d1cec0db2 authored over 5 years ago by Chris Bielow <[email protected]>
[FEATURE] ThermoRawFileParser support in FileConverter (#4095)

* [FEATURE] ThermoRawFileParser support in FileConverter

* Update License.txt

* Update Fil...

86f86ab7bcc31a96e3b3d95b3918344c2619bc17 authored over 5 years ago by Timo Sachsenberg <[email protected]>
Feature/tv annot2 (#4128)

* add live peak annotations

* [FEATURE] enable disable via context menu

* [FIX] colors are...

ef2110574ef14ec5e8c7d7a47ac303e1ab43b2f1 authored over 5 years ago by Timo Sachsenberg <[email protected]>
[FIX] IDFilter: fixed 'not equal' option in MetaValue filtering (#4127)

* [FIX] IDFilter: fixed 'not equal' option in MetaValue filtering

* [TEST] add regression tes...

93059954407b12a16451b5b4e6559def98cc168c authored over 5 years ago by Eugen Netz <[email protected]>
Fix/tv minor (#4125)

* [FIX] change legend from MZ to m/z

* change legend in 2d view

a95d57c65b1ac736ff996aacecaeb122727d04bf authored over 5 years ago by Timo Sachsenberg <[email protected]>
merge from develop

5065cb27731033a3eb667f0e1d550438411bbb4b authored over 5 years ago by TomW <[email protected]>
[FEATURE] annotate ion index and charge as subscript (#4116)

* [FEATURE] annotate ion index and charge as subscript

* Update Annotation1DPeakItem.cpp

*...

1f9fc06d169b858c713c61d3b2610d5f7829e38b authored over 5 years ago by Timo Sachsenberg <[email protected]>
ID mapping working

ba924ecd615bfc1df6e18cea8942158a76236664 authored over 5 years ago by TomW <[email protected]>
Merge pull request #4121 from cbielow/fix_proteinID

TOPPAS: more prominently report output file store errors

d7f385e8fa2b94adff20d7e204ad0eef3e3a198f authored over 5 years ago by Chris Bielow <[email protected]>
Fix codes for Jenkins build

7ba56f09840d85c1dd387835d075ccfaaaecd3b9 authored over 5 years ago by JeeK <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into fix_proteinID

9c7eefd092a5a78d04b66982e34b07331a39f4e2 authored over 5 years ago by Chris Bielow <[email protected]>
[FIX] TOPPAS/ExecutePipeline now explicitly report when output files cannot be written (via Messagebox or Exception)

ae816cfee97a195326b6c579090a192fa9d89085 authored over 5 years ago by Chris Bielow <[email protected]>
[FIX] TOPPAS/ExecutePipeline now explicitly report when output files cannot be written (via Messagebox or Exception)

3b533a8e095abd8a41e022573e75fb7c9347179b authored over 5 years ago by Chris Bielow <[email protected]>
Merge pull request #4118 from oliveralka/agm/sirius_out

[ADD] Output SIRIUS workspace (AssayGeneratorMetabo)

bc702c62147a5b5b99cb500b90e7e9882385ff9c authored over 5 years ago by jpfeuffer <[email protected]>
[FIX] platform-agnostic getline

b907359510bb1672c2f4389fb15de41761aa92ca authored over 5 years ago by Hannes Roest <[email protected]>
fix reporting of ion injection time

712289c86182a6dfa3ae6f27a3a74b8c0cb2d347 authored over 5 years ago by Chris Bielow <[email protected]>
Try to do filtering in OpenSwathScoring in-place

9af5cabdebc7740ab149b976d260b67c972b5201 authored over 5 years ago by jpfeuffer <[email protected]>
Merge pull request #4113 from hroest/feature/osw

Feature/osw

c0b753b50e4d24799666fb94c45116525372d655 authored over 5 years ago by Hannes Roest <[email protected]>
Better readability of bool comparison result

Co-Authored-By: Hannes Roest <[email protected]>

53134b5ad785b737e8c62e7227b748ed6e59e336 authored over 5 years ago by jpfeuffer <[email protected]>
[FIX] fix potentially different number of columns per row in mzTab

84692c45dabbedb4cea72b8a5c9cd93e7ef909c8 authored over 5 years ago by Chris Bielow <[email protected]>