Ecosyste.ms: OpenCollective
An open API service for software projects hosted on Open Collective.
github.com/OpenMS/OpenMS
The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS
Signed-off-by: Julianus Pfeuffer <[email protected]>
e1252fe3a6e464f71b52d9c022b1687356e5df1d authored about 5 years ago by Julianus Pfeuffer <[email protected]>on the example of IsobaricAnalyzer.
Signed-off-by: Julianus Pfeuffer <[email protected]>
2859356fee118c9c4fe513d7ef3f0f0dc1459f7e authored about 5 years ago by Julianus Pfeuffer <[email protected]>Signed-off-by: Julianus Pfeuffer <[email protected]>
725977ec6c85f6dad22d89f131612561515f7f62 authored about 5 years ago by Julianus Pfeuffer <[email protected]>Signed-off-by: Julianus Pfeuffer <[email protected]>
91559578a013179736ec2b72c73a55218901a025 authored about 5 years ago by Julianus Pfeuffer <[email protected]>
* Fixes bugs encountered in a full TMT pipeline:
- When consensusXML is merged rowwise instead ...
- When consensusXML is merged rowwise instead of colwise, files in the
ID structures might not ...
01434ff324d2a224067190c18e2e14c5c9d446cb authored about 5 years ago by Hendrik Weisser <[email protected]>
8aac57a41b4413ae08b0d373adfd2eae2dd6ac78 authored about 5 years ago by Hendrik Weisser <[email protected]>
44621cf52aee89fe3e0e6d68b220eba2bb7987dd authored about 5 years ago by Hendrik Weisser <[email protected]>
06ff56ecdb9572ec67ff3ed992a18a135e22bc23 authored about 5 years ago by Hendrik Weisser <[email protected]>
[FIX] set primary MS run support in more tools
085cb957e5aae1548ec85884fb5da218ca0080c3 authored about 5 years ago by jpfeuffer <[email protected]>Improve handling of precursor m/z when reading/writing mzML
163c13c86c4ce3b6ebb22f126d4667615da7e834 authored about 5 years ago by hendrikweisser <[email protected]>0f5e45f0a0fc20138063bf36929dd5a66ded79c9 authored about 5 years ago by Hendrik Weisser <[email protected]>
c47103b5328522e67dffe5d05c6013a9f4ee5294 authored about 5 years ago by Timo Sachsenberg <[email protected]>
6f8b6bc5b773dbeb3112ba2a59816f786e4278ca authored about 5 years ago by Timo Sachsenberg <[email protected]>
2571cf318df17ed00224eca977b3e71ce8ceba24 authored about 5 years ago by Timo Sachsenberg <[email protected]>
aeff5642ce073ec6c2e98ba64515cddf0a26006a authored about 5 years ago by Timo Sachsenberg <[email protected]>
80dd9f235b8546dc4251eb4611428d893130791a authored about 5 years ago by Timo Sachsenberg <[email protected]>
e7037f0a5fb8a3f606f5eb8165c454c5c5d56910 authored about 5 years ago by Oliver Alka <[email protected]>
[FEATURE] Added Reference column to MSstats output
3804820fc0f503839eac1e1397c5cd637ad10646 authored about 5 years ago by jpfeuffer <[email protected]>* fix random segfaults if identified spectra were browsed
* Update LayerData.cpp
79943d4015ad47ea72c189d90fc450456ac49f80 authored about 5 years ago by Timo Sachsenberg <[email protected]>Signed-off-by: Julianus Pfeuffer <[email protected]>
4253dfa058ef1e1989ce60d8d71d7bf640902f11 authored about 5 years ago by Julianus Pfeuffer <[email protected]>Signed-off-by: Julianus Pfeuffer <[email protected]>
4da4ec4f09d59cc10786858dd42d3d515833dae0 authored about 5 years ago by Julianus Pfeuffer <[email protected]>[FIX] avoid mixing hashes
3d3bb80985a44a864c51a07c1778754dad90b8d5 authored about 5 years ago by jpfeuffer <[email protected]>0f8f805eb61604930368c95f4f53e790ef21a3cc authored about 5 years ago by jpfeuffer <[email protected]>
8e23a6a467aefc84ae30b17ce4db268810cd3a80 authored about 5 years ago by jpfeuffer <[email protected]>
d68f14dd85dc28f0900f653edd2977d9595bcd7b authored about 5 years ago by jpfeuffer <[email protected]>
c11734284a5563573e1aacfc0bd8aaecc6032424 authored about 5 years ago by jpfeuffer <[email protected]>
42d9256cc4d1cec442d4686e84fd22c6507dab88 authored about 5 years ago by jpfeuffer <[email protected]>
4bbbe8fd4fecf433fdeafc5febe0bd8f5b69c176 authored about 5 years ago by jpfeuffer <[email protected]>
52f3eed77bd850f79b3a8e779213c01a9260725b authored about 5 years ago by jpfeuffer <[email protected]>
* [FIX] simplified OPXLHelper::computeDeltaScores
* [FIX] computeDeltaScores sorts PeptideHit...
c310a36ed65a4e7f9af1b868e3a3078de1c332c4 authored about 5 years ago by Eugen Netz <[email protected]>84e05c5972b6a1fbd4efadafffb01069a3396df5 authored about 5 years ago by Timo Sachsenberg <[email protected]>
22e87fb58e1f616938fcd6aca9df948dffa23fe0 authored about 5 years ago by Timo Sachsenberg <[email protected]>
* [FIX] simplified OPXLHelper::computeDeltaScores
* [FIX] computeDeltaScores sorts PeptideHit...
6f0e6049982218668917b58e0699d05d89e12022 authored about 5 years ago by Eugen Netz <[email protected]>4be9a2da7b13e867001e2a7252b0995ff7f1dccb authored about 5 years ago by Timo Sachsenberg <[email protected]>
c8301b2debd8e599a6eb685997dfada1be99f2c9 authored about 5 years ago by Timo Sachsenberg <[email protected]>
* [FEATURE] NucleicAcidSearchEngine: use precursor intensity to find RT pos. for label-free quan...
8f6886302b55bd1881a45c62cc77b7fb7ba7e9d6 authored about 5 years ago by hendrikweisser <[email protected]>5cf3c492256a12ca1cce791855101f3f52f2be14 authored about 5 years ago by jpfeuffer <[email protected]>
* [TEST] updated XLMS mzid output files
* [RESOURCE] updated psi-ms.obo CV file
* [TEST] u...
2b09dd10fd3608f37503e26b02b248897e390ca1 authored about 5 years ago by Eugen Netz <[email protected]>31422197bc1745e2222443e56f4fc9149b8c4772 authored about 5 years ago by jpfeuffer <[email protected]>
c16026ddfb5af954e7708d4dbe6cf28d282b6107 authored about 5 years ago by jpfeuffer <[email protected]>
0565e3816c08efdc8dcbc3aabeced7fe11758df4 authored about 5 years ago by jpfeuffer <[email protected]>
09d0dfb30e59fa4080e808e6d5c231b59f12f2a1 authored about 5 years ago by jpfeuffer <[email protected]>
[FEATURE] ProteomicsLFQ workflow tool and additional inference tools
a86f58cd7f26a0284ca690703c513e29e55c19fa authored about 5 years ago by Timo Sachsenberg <[email protected]>Signed-off-by: Julianus Pfeuffer <[email protected]>
6f4bac126911bd4367b58e85caaaf632912a6217 authored about 5 years ago by Julianus Pfeuffer <[email protected]>fdd2d3274096f7d607e9f9f2c39bbfe2c713e90f authored about 5 years ago by Hendrik Weisser <[email protected]>
Signed-off-by: Julianus Pfeuffer <[email protected]>
209896098f884077388992aa9c71ea8580b50c79 authored about 5 years ago by Julianus Pfeuffer <[email protected]>Signed-off-by: Julianus Pfeuffer <[email protected]>
02d19e939e9c558d84d8e15752eccbc1247bc027 authored about 5 years ago by Julianus Pfeuffer <[email protected]>Signed-off-by: Julianus Pfeuffer <[email protected]>
e547083b7ae03b137175862d9c7da9d3314ceaa6 authored about 5 years ago by Julianus Pfeuffer <[email protected]>Signed-off-by: Julianus Pfeuffer <[email protected]>
726edd107d5d44169e679df275010f9d905ccbb4 authored about 5 years ago by Julianus Pfeuffer <[email protected]>Signed-off-by: Julianus Pfeuffer <[email protected]>
65a3c1da1ee7e635a620e0f85e43158e1a0e177d authored about 5 years ago by Julianus Pfeuffer <[email protected]>to mod sequence and remove unnecessary stuff.
Signed-off-by: Julianus Pfeuffer <jpfeuffer@fu-ber...
598f9f65cb777987a4e5bf751b93ebbb18d9045b authored about 5 years ago by Julianus Pfeuffer <[email protected]>54d94692851cf7d4aed16473356a93858befbb30 authored about 5 years ago by Julianus Pfeuffer <[email protected]>
Signed-off-by: Julianus Pfeuffer <[email protected]>
00832a6082d5ccc261ef024361b97aefe213cbe9 authored about 5 years ago by Julianus Pfeuffer <[email protected]>02dd143bd799b6b9dca9de57a78ea52972e9edde authored about 5 years ago by Timo Sachsenberg <[email protected]>
Add whitelist to ProteomicsLFQ test
Signed-off-by: Julianus Pfeuffer <[email protected]>
42635b8de2a089ff5b8c7e47099d0f0b968fed4d authored about 5 years ago by Julianus Pfeuffer <[email protected]>d25a3412f3236156dba32bdf7937989153544c48 authored about 5 years ago by Hendrik Weisser <[email protected]>
d00dc5a8ac4398061ac1b797ef8843914045fb26 authored about 5 years ago by Hendrik Weisser <[email protected]>
[FIX] OpenSWATH: Patch to prevent NaN from spectral angle score
bc2b18cb610eed8eee8d3dc44ad48176a83fdad6 authored about 5 years ago by Timo Sachsenberg <[email protected]>cb71e836d7b932a501b2b4c58b0b8c34980ca2c7 authored about 5 years ago by Hendrik Weisser <[email protected]>
1c4f73e72aa4f4febb0d4f147329781d3fca92d5 authored about 5 years ago by Hendrik Weisser <[email protected]>
Signed-off-by: Julianus Pfeuffer <[email protected]>
6ff40f370f388171722b372e390d19e8121654b8 authored about 5 years ago by Julianus Pfeuffer <[email protected]>Signed-off-by: Julianus Pfeuffer <[email protected]>
b1f670c6edc68b5f9f59993519d5814e25a894c1 authored about 5 years ago by Julianus Pfeuffer <[email protected]>Signed-off-by: Julianus Pfeuffer <[email protected]>
4f67f34ca76805be4454125f096eca5f92f65e58 authored about 5 years ago by Julianus Pfeuffer <[email protected]>Add test for ProteomicsLFQ (faking PEPs in the example files).
Signed-off-by: Julianus Pfeuffer ...
0f9c58d765de868f82e92e60525cb8759c9c9957 authored about 5 years ago by Julianus Pfeuffer <[email protected]>907e8ccca3405dcc71c2a0f9c9f412b2724a00ce authored about 5 years ago by Julianus Pfeuffer <[email protected]>
Signed-off-by: Julianus Pfeuffer <[email protected]>
cfb46d2320f6a61284b875d443ab87895ce82866 authored about 5 years ago by Julianus Pfeuffer <[email protected]>Signed-off-by: Julianus Pfeuffer <[email protected]>
e8a438986285f6a65c065f3339138b2e1f2336c0 authored about 5 years ago by Julianus Pfeuffer <[email protected]>0b8a2365abeeb8b8c345f82c25f66f1366fd39f8 authored over 5 years ago by Hannes Roest <[email protected]>
350ffa46b382c9cbcab75caf2b5df21149591746 authored over 5 years ago by Hannes Roest <[email protected]>
e4627e2a1d67aaa0b7804beef139dc1548484cd5 authored over 5 years ago by Hannes Roest <[email protected]>
8b1ea85c26a60f939a139ce1e2f142e084a36cdf authored over 5 years ago by Hannes Roest <[email protected]>
a2bcff1e01da7e00ea7c7c7e61a2957aff670e8b authored over 5 years ago by Hendrik Weisser <[email protected]>
5841068a2e9353492b58da9c16b6bec6151588ed authored over 5 years ago by timosachsenberg <[email protected]>
486f4368f0d20d7e599ea358e723169a3d6de33b authored over 5 years ago by timosachsenberg <[email protected]>
Disable automated m/z annotations in TOPPView by default
081c4600de18c39656a3cb0a2902a97ebf89f622 authored over 5 years ago by Timo Sachsenberg <[email protected]>Signed-off-by: Julianus Pfeuffer <[email protected]>
6a3eb801ffa57b00dde98b12cdfd694d32f8f1d4 authored over 5 years ago by Julianus Pfeuffer <[email protected]>Signed-off-by: Julianus Pfeuffer <[email protected]>
04dd4674d68a083698712bfd4638e2757225a4f9 authored over 5 years ago by Julianus Pfeuffer <[email protected]>Signed-off-by: Julianus Pfeuffer <[email protected]>
d1c4f551ca9513602a194bd7188889a4ba7e95cd authored over 5 years ago by Julianus Pfeuffer <[email protected]>Nested namespace fix.
Signed-off-by: Julianus Pfeuffer <[email protected]>
d335015a6a3f9725e4096b31ef642acd3fe3d0b3 authored over 5 years ago by Julianus Pfeuffer <[email protected]>
# Conflicts:
# src/openms/source/FORMAT/MSstatsFile.cpp
Signed-off-by: Julianus Pfeuffer <[email protected]>
b1c7bcaa8c8b245631da894145c58480d087a323 authored over 5 years ago by Julianus Pfeuffer <[email protected]>e6a4220f12d3cb054f5c61a8f95d040c0120ad05 authored over 5 years ago by Julianus Pfeuffer <[email protected]>
Use 0/1 for Metavalue bool.
GridSearch test.
Allow skipping unassigned peptides in ConsensusMap a...
62957188258d9120e2db0c3a10f60b9a0356c444 authored over 5 years ago by jpfeuffer <[email protected]>
ImageCreator improvements
6b6c92ac38eb0d40e2012dac415345cafa1a11eb authored over 5 years ago by Timo Sachsenberg <[email protected]>minor wording fixes
664a616f7be94302285e251e19f6c6a4c52cfaa7 authored over 5 years ago by Timo Sachsenberg <[email protected]>[Update] MSstatsConverter (TMT)
332fb388f72929915a87bf00992427b2415cf7ba authored over 5 years ago by Timo Sachsenberg <[email protected]>5a162febf7220465ccabe787833b236548984994 authored over 5 years ago by oliveralka <[email protected]>
Completely reverted String, trying to fix Windows hash bug.
Fix filtering in BasicProtInference.
...
6ca5b7d83dec2bbdff55b4605dbbc27b2e64cdea authored over 5 years ago by Hendrik Weisser <[email protected]>
e125f6f9dd660332515daf4612b713ce5db7b308 authored over 5 years ago by oliveralka <[email protected]>
Co-Authored-By: Hannes Roest <[email protected]>
7a7a887cdcdcdf3992747040ff0afee937dee72b authored over 5 years ago by hendrikweisser <[email protected]>ebfdf93c023f4c333ceb61f04158d5736b63e482 authored over 5 years ago by oliveralka <[email protected]>
[FEATURE/FIX] ChromeleonFile handles raw data header
1f1dd633e583a28c35ef7a93c1ec71aeab2c4be2 authored over 5 years ago by Hannes Roest <[email protected]>Signed-off-by: Julianus Pfeuffer <[email protected]>
b9daf20da23519971f469743708714b5a8121ca9 authored over 5 years ago by Julianus Pfeuffer <[email protected]>Signed-off-by: Julianus Pfeuffer <[email protected]>
76a259eebf079235e3af5121747b19b444a54c44 authored over 5 years ago by Julianus Pfeuffer <[email protected]>ea8ec4cf44db29bec1b9f2c3b622fc8ecece043e authored over 5 years ago by Pasquale Domenico Colaianni <[email protected]>
feat: Handle possible '\r' in lines (discard it right away)
feat: Replace regex_search with reg...
0b5bbea4d1056fb928301eef1bf15dfd4651ee80 authored over 5 years ago by Pasquale Domenico Colaianni <[email protected]>