Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/OpenMS

The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS

Import IsoSpec v2.1.0b1

494fcc91304de2125b9ad5fddb5d07fb9ff98922 authored over 4 years ago by Michał Startek <[email protected]>
Merge pull request #4716 from jpfeuffer/fix/cidSpecdata

[Fix] consensusID spectra_data merging

bdfcd98b1c9a5ee10e51146218ae3d8c40c914a8 authored over 4 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #4712 from cbielow/report_peakmem

report peak mem usage on Linux

25253e710511b22d71cf65ae3aabaa20fe0b564e authored over 4 years ago by Timo Sachsenberg <[email protected]>
arghhj

ccdc19079216deb4a74fce25959de0c8e770a6c4 authored over 4 years ago by jpfeuffer <[email protected]>
...

0f888da8b79901afa4ece68c4a6580df2118716c authored over 4 years ago by jpfeuffer <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into develop

f5c2dd48ac85c392a3425b0cac616a81bdb364b7 authored over 4 years ago by Julianus Pfeuffer <[email protected]>
Fix spectra_data comparison in ConsensusID. Add version to Comet IdentificationRun info.

8cef6e0392f259a41e5f5adac315b644bb52e95d authored over 4 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #4713 from jpfeuffer/feature/msgfNewOptions

[FEATURE] add new MSGF options

12f707750e257429a8e7cbf214ad9add1a80a85c authored over 4 years ago by jpfeuffer <[email protected]>
Merge pull request #4694 from timosachsenberg/feature/MzTab_stream

Feature/mz tab stream

bb800883a1ee6ab43e43227d2a8df2f679c4b1db authored over 4 years ago by Timo Sachsenberg <[email protected]>
report peak mem usage on Linux

690faf01716aebef142547828b7b018ae97c5f28 authored over 4 years ago by Chris Bielow <[email protected]>
note: different CMAKE_PREFIX_PATH when QT build from source

436759371fe1e54ef324573209abd8bf25cc7a39 authored over 4 years ago by Tom Waschischeck <[email protected]>
add for MacOS (untested)

165f8224ad5171039bea758b9d2987fd24794df0 authored over 4 years ago by Chris Bielow <[email protected]>
Merge pull request #4710 from jpfeuffer/fix/protTermModsAdapters

[FIX] writing of protein terminal mods correctly in Comet and MSGF adapter

fbfc88395e24659a70bcff6c2c52ecc751ed314c authored over 4 years ago by Timo Sachsenberg <[email protected]>
[FEATURE] add new MSGF options

a51f56dc0bbb1badc2168ed67d30439062d25dcb authored over 4 years ago by Julianus Pfeuffer <[email protected]>
fixed a typo and added some information

35e3de74aa47a0463c6970b32953b57c8ff2e384 authored over 4 years ago by Tom Waschischeck <[email protected]>
report peak mem usage on Linux

3f92571585ed4d60ce793575ed9764a02f3eeebe authored over 4 years ago by Chris Bielow <[email protected]>
removed some unneded copies

8d1b4b4768555b01b6a409cbd78c5c39e2fb0cbd authored over 4 years ago by Timo Sachsenberg <[email protected]>
[FIX] writing of protein terminal mods correctly in Comet and MSGF adapter

292c9655ea8d37327223e8e7bdebfc7c817fcb45 authored over 4 years ago by Julianus Pfeuffer <[email protected]>
added another move

7737d33d8d4f7c462d17546ac0f8de09b7540331 authored over 4 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #4706 from cbielow/swath_wizard

SwathWizard progress

b88a4053c2f69c6992c726e68072a1119482b0f9 authored over 4 years ago by Timo Sachsenberg <[email protected]>
more fixes

b368c7506a357b1fce21d4c3cea2c14a4ce34e37 authored over 4 years ago by Chris Bielow <[email protected]>
fix CI

c9e9c417af95d5f41bd243f8e7b40127e5e26cec authored over 4 years ago by Chris Bielow <[email protected]>
Merge branch 'feature/MzTab_stream' of https://github.com/timosachsenberg/OpenMS into feature/MzTab_stream

5fc2ca3c6273f8741aeb4eba091c622dfae69f53 authored over 4 years ago by timosachsenberg <[email protected]>
removed inheritance and virtual functions

9f60ab998f3c63651ee26fd5901456e0c7b533ac authored over 4 years ago by timosachsenberg <[email protected]>
removed some unneccessary constructions

bf127092abf68e50f61b895964ad2149ab66bf29 authored over 4 years ago by timosachsenberg <[email protected]>
Fix #4691 (NucleicAcidSearchEngine mzTab output) (#4692)

* [TEST] added test case for RNase digestion: multiple matches of a sequence in the same RNA

...

73e1505fb0366349952ef301f7aba7c818a09117 authored over 4 years ago by hendrikweisser <[email protected]>
addressed some review issues

d231c41fdd55f1e3b540c75189f88d6f7b4b3fce authored over 4 years ago by Timo Sachsenberg <[email protected]>
[Feature] consensus id per spectrum (#4703)

* first try on support for Percolator support and "per-spectrum" grouping
in ConsensusID.

* ...

d75816388158ccbbcb429e954b6bd235d43e30bd authored over 4 years ago by jpfeuffer <[email protected]>
Percolator: change comment when using psm or peptide fdr (#4663)

* change comment when using psm or peptide fdr

* rm second if

* update log

* Update Per...

32b525d7e6f62747a0119277cc0d98582746a3d4 authored over 4 years ago by Leon-Bichmann <[email protected]>
Merge pull request #4682 from OpenMS/feature/streamingAdapters

[FEATURE ]First try on memory efficient streaming/checking for mzmls in SE adapter

e88fdeeac8453e23dac73c9961211bac9e41e25c authored over 4 years ago by jpfeuffer <[email protected]>
Merge pull request #4704 from jthueringer/better_memory_usage

MapAlignerTreeGuided: Better memory usage and new option

9b3c1b0aaaf5ff33280e917c7ce9a59a901d8437 authored over 4 years ago by Chris Bielow <[email protected]>
fix: struct vs class (#4700)

* fix: clash on Windows with foward declared struct for a later declared class

* fix: manual ...

4bc09f48fd93c3d8defbdf7cbe5fae2ce0e8b92e authored over 4 years ago by Douglas McCloskey <[email protected]>
recent changes.....

c598d8877dcff947b143ed7a8ea7bd61866556f6 authored over 4 years ago by jpfeuffer <[email protected]>
fixed tests

4a10bcd911ca04d3db56c3ebc5a477f67c346603 authored over 4 years ago by timosachsenberg <[email protected]>
Merge remote-tracking branch 'origin/feature/MzTab_stream' into feature/MzTab_stream

4eecd4f0b52de9fc0775e79ec29be17d1a3ee453 authored over 4 years ago by timosachsenberg <[email protected]>
update cppcheck

27c3e8ac57590bf12d13071f12981259a57c3b48 authored over 4 years ago by jpfeuffer <[email protected]>
Update THIRDPARTY (#4689)

* Update THIRDPARTY

* fix rm endif

* ommsa deployment target 10.9

14c285c5cb31f640a614849fe4b7c8c4233d813c authored over 4 years ago by Oliver Alka <[email protected]>
Merge remote-tracking branch 'upstream/develop' into feature/MzTab_stream

5b3caa00a43629c332657c6a0cace2becebc6e8b authored over 4 years ago by timosachsenberg <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into swath_wizard

5258b86017095fdf1a594b0fc4563cc416fbfb82 authored over 4 years ago by Chris Bielow <[email protected]>
Merge pull request #4705 from cbielow/filename_stipping

[FEATURE] clean up file suffix renaming

cfaa2fddfff1b22f07f475a33931596aa34a3979 authored over 4 years ago by Chris Bielow <[email protected]>
whitelist

691e5279b1bbff3bbcba56d59f1b0831399cad76 authored over 4 years ago by Timo Sachsenberg <[email protected]>
TOPP test: fix test properties

d9b79e0343d81c4013f730bd834f5d8e1197511a authored over 4 years ago by JuliaThüringer <[email protected]>
whitelist version from git

b196f6b57b0d9d34ccd9e93c1369efe175519a2a authored over 4 years ago by Timo Sachsenberg <[email protected]>
parameter documentation update

bf3bcae4ab5c196940b7e0d8e01a4562ff5f0f85 authored over 4 years ago by JuliaThüringer <[email protected]>
amend

142ec698bb262734eec616239aea18e632a02046 authored over 4 years ago by Chris Bielow <[email protected]>
[FEATURE] clean up file suffix renaming

8410a25a39c1fdfd2fb9657f2c5678ebfb729674 authored over 4 years ago by Chris Bielow <[email protected]>
Wizard now supports running OSW entirely

b31582e699a9b73e8688a1a18032e6990ae55345 authored over 4 years ago by Chris Bielow <[email protected]>
[FEATURE] clean up file suffix renaming

b7d2a1dc1cf6d6ce9caa53abb5016c0c766c8c71 authored over 4 years ago by Chris Bielow <[email protected]>
proper error message if file does not exist

5b25658294c70bcb60021f78cb8074eb5502b494 authored over 4 years ago by Chris Bielow <[email protected]>
NOOP

06bce906a7a8ac035ff38338807d49692db7b73b authored over 4 years ago by Chris Bielow <[email protected]>
Merge pull request #4701 from IceFreez3r/ffc-testzone

[Feature] FFC/FeatureFinderAlgorithmPicked speedup

759e535914d2c5e5b0b9a33392f028195143d714 authored over 4 years ago by Chris Bielow <[email protected]>
Added myself as Author

6a370e556d4bc75b15bda0c20904a6344005144e authored over 4 years ago by IceFreez3r <[email protected]>
replace hasTerm / getTerm with checkAndGetTerm()

4e639121e96015e7af71e4fe4882f500ad44801a authored over 4 years ago by Anton Kriese <[email protected]>
fixed tests

8ba27e5b0a5f393c16a655e027ec2ef2c26cb522 authored over 4 years ago by timosachsenberg <[email protected]>
add Version

3cfbde9fd3b29a88d2e1de2dbab277966e7ff1b1 authored over 4 years ago by timosachsenberg <[email protected]>
Uncommented continue()-s

There werde multiple occurences of commented continue()-s. Now there are uncommented and the fol...

2c2cb44081a891bb9a4de8f10dac513153a3d376 authored over 4 years ago by IceFreez3r <[email protected]>
Merge remote-tracking branch 'origin/feature/MzTab_stream' into feature/MzTab_stream

95d96ad6c92eeac6171eb55f13d7b3ddc45f5af4 authored over 4 years ago by timosachsenberg <[email protected]>
Merge pull request #19 from jpfeuffer/pull/4694

minor style. add version for protein inference

548dc9f4c7e39fa38628c8af5add8159302f7a7d authored over 4 years ago by Timo Sachsenberg <[email protected]>
ID streaming

7c62f83fa71870a400d8571d9c3ba358b31d82cf authored over 4 years ago by timosachsenberg <[email protected]>
refactor inputfile and outputdirectory widgets

make OSW runnable

36342b1d7574c37012a059a4284a6057c453224e authored over 4 years ago by Chris Bielow <[email protected]>
make important OSW params not advanced

5423d4eb068173334671c2046f2fec832879a044 authored over 4 years ago by Chris Bielow <[email protected]>
make Param::update less verbose

f742bcf00606e938d0f6cc86bdb2a009e8ff936d authored over 4 years ago by Chris Bielow <[email protected]>
remove useless logging

e6a7b30f720efba63435fca43f958c108876c1f6 authored over 4 years ago by Chris Bielow <[email protected]>
minor style. add version for protein inference

dd2825c633dcd05ac7a58274d63d69089de5ccd8 authored over 4 years ago by Julianus Pfeuffer <[email protected]>
Coding conventions

eaba74db5534d80da71bf2cd9d9da8024dde26cf authored over 4 years ago by IceFreez3r <[email protected]>
Update CMakeLists.txt

f7c9f158a414acacd105abe5560f2d1617872bc0 authored over 4 years ago by jpfeuffer <[email protected]>
minor simplification

aa7f20e184591a2c5289f93d7aae384bcd1b62c9 authored over 4 years ago by timosachsenberg <[email protected]>
fix for older boost versions

5253acead4b7d185ea15e0aabc75a3688e55b758 authored over 4 years ago by timosachsenberg <[email protected]>
Add Qt Sql to external code test

ea7855b5176439844ba7b3a3388229379b92f1b2 authored over 4 years ago by jpfeuffer <[email protected]>
[NOP] style fix

7070fb826216d4d474be63e6bdebc35a321ab5d3 authored over 4 years ago by timosachsenberg <[email protected]>
fixed pq test

ae150c582cdcccd7d6513baca48c36f42888d469 authored over 4 years ago by timosachsenberg <[email protected]>
[Feature] refactor PeakPickers (#4695)

* add auto mode and moves to PPHiRes (lowmem mode)

* removed standalone lowmem version of PP
...

fccdfa8424114c1fa38db30b81682451240b2880 authored over 4 years ago by jpfeuffer <[email protected]>
[FIX] test b/c of copy paste

1e735d494ed02dcd8899f620bcacd7225451b2b6 authored over 4 years ago by jpfeuffer <[email protected]>
[FIX] style and copy-paste

5d5a9e636c4f029d1d74cc2899d341271196c0d0 authored over 4 years ago by jpfeuffer <[email protected]>
cppcheck fix

cd21a8cdf6c0cbdf12a7284d9ab58f7b367b1fbb authored over 4 years ago by timosachsenberg <[email protected]>
update test files

0b3ff4b9b0fef27ed1630a7cae9982be324f1c1c authored over 4 years ago by timosachsenberg <[email protected]>
Add Qt Sql dependency to the Documenter tools

0336d07933770d46407579e5602414795700cbde authored over 4 years ago by jpfeuffer <[email protected]>
Update FeatureFinderAlgorithmPicked.cpp

c9941e01db54790cf7cc91f93b3a371a6dfa741d authored over 4 years ago by IceFreez3r <[email protected]>
Update CMakeLists.txt

7bedce73a82f7eb1e627eef14a7d71e35b07ee04 authored over 4 years ago by jpfeuffer <[email protected]>
update tests

688fcad3e8b6ef132e161366176bfc8fd78a24de authored over 4 years ago by timosachsenberg <[email protected]>
extend example for MY_CXX_FLAGS

8fb4853ea7aa560aa8f1fdfca85a19d059c0284e authored over 4 years ago by Chris Bielow <[email protected]>
fix formating of windows paths

e3575c5bcbc7f611a118920fb1c526ae3fe8e182 authored over 4 years ago by timosachsenberg <[email protected]>
added run level export of groups

e9612a5b2ee2d4a2c8af3cfb7ed46b5925ace9af authored over 4 years ago by timosachsenberg <[email protected]>
moved export method to stream code

0279ec75ce3ceeef1ccd7b312404a6eaa2986e71 authored over 4 years ago by timosachsenberg <[email protected]>
stream without optional columns

50171cfa95775f5b527a43b7a03115a30dac19ca authored over 4 years ago by timosachsenberg <[email protected]>
Merge pull request #4637 from dmccloskey/feat/autoQC

Feat: Auto QC calculations

7aa1f75ea323d8fd4e89189f02ae8a319760df1b authored over 4 years ago by Timo Sachsenberg <[email protected]>
edit advanced parameters

e40422d7d1acaa221324c3d84873da761d619b04 authored over 4 years ago by Chris Bielow <[email protected]>
add input pqp files and parameters

1ba12c7840377a26e2ae06df8b2c0c8efdda6500 authored over 4 years ago by Chris Bielow <[email protected]>
Merge pull request #4677 from hendrikweisser/rnamasscalc-formula

Sum formula output in RNAMassCalculator

714aa9b22674a46667dbee48899ffdbf51e7c435 authored over 4 years ago by jpfeuffer <[email protected]>
even more

145d100925d3f7aa7f111e7caa47ef050414c587 authored over 4 years ago by timosachsenberg <[email protected]>
and more refactoring

dbe5f030464c5634318e8eba459d1b133e4535a3 authored over 4 years ago by timosachsenberg <[email protected]>
Add gdb to gitpod

a7a9ab90fec242800d51f898cea3564e54500384 authored over 4 years ago by jpfeuffer <[email protected]>
ignore .vscode

955ed2b02002f6e531351c01ad650c2484ed7f3b authored over 4 years ago by jpfeuffer <[email protected]>
added some basic configuration for gitpod

a08d97d09725d4e21023eb0ead3a71e3a0aa3db4 authored over 4 years ago by jpfeuffer <[email protected]>
qScore added

c7ac0057b27615dcfe3c801fc98abfd9e1a16d0d authored over 4 years ago by kyowonjeong <[email protected]>
Total signal within isotope window is used for PeakGroup.h selection in precursor

80273ed18c2bac308fe60800365d1f3cf6290433 authored over 4 years ago by kyowonjeong <[email protected]>
more refactoring

b5f820d999d1a6689f4ea712e2ad6fe5465828ae authored over 4 years ago by timosachsenberg <[email protected]>
[FIX] fixed copy/paste bug in RNAMassCalculator

4ea0fa7fca337d217d70e1d8b97c50cf92daf17f authored over 4 years ago by Hendrik Weisser <[email protected]>
code review

a8150d2fa7d3b9c926434be11e9e8bbb5b0b517b authored over 4 years ago by jpfeuffer <[email protected]>
remove debug output

850e6ae45d44bf9f2f698d79da7030862525bc79 authored over 4 years ago by jpfeuffer <[email protected]>