Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/OpenMS

The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS

prefix modules with pyopenms. ?

e85074ba2e4fea32d2ec8f680975f71f5ca7bc9f authored about 4 years ago by jpfeuffer <[email protected]>
[DOC] for some methods

9b957a6d7c23eed36a8c5857b62fc1c441d0673f authored about 4 years ago by Chris Bielow <[email protected]>
make method more generic

2a38ad8309d74f1ec0fc0625f76254b801b58951 authored about 4 years ago by Chris Bielow <[email protected]>
[DOC] show tool tips for SpectraView

[REFACTOR] some refactor
[FEATURE] show text in search box as hint (will disappear when clicked on)

865f98d2b8aed99d221ccd34afded461705e6c9a authored about 4 years ago by Chris Bielow <[email protected]>
fixes #4928

ee29a4354597848954ade882328024aed182e882 authored about 4 years ago by Chris Bielow <[email protected]>
add convenience function

3d040c3ea4f4a3c2811a98429385dac3d0e7c365 authored about 4 years ago by Chris Bielow <[email protected]>
NOP

a66dd9f09cc8b1edd33b4177457fba959dd89f5b authored about 4 years ago by Timo Sachsenberg <[email protected]>
NOP

9b8cc508cfbfe619d1f5670b9f2eb962cb1dfbc8 authored about 4 years ago by Timo Sachsenberg <[email protected]>
FIX: .app execution for installer; Set path to /usr/bin/

34bcf7e5f0f310909ee97ed51b2c79aaddc4586e authored about 4 years ago by oliveralka <[email protected]>
peakpicking added in FLASHDeconv.cpp

3836aa96eb2e08023dd7935b2edea4733fbf07fe authored about 4 years ago by kyowonjeong <[email protected]>
fixes #4926

008d228c09b91daa713557abf4218c76c967af5b authored about 4 years ago by Chris Bielow <[email protected]>
refactor conversion

510353d32a8acd96332cd548edb85429a594ebae authored about 4 years ago by Chris Bielow <[email protected]>
refactor Chrom display

ad5cf3c1ff5bdd5a645cbf27a0ef0d9b42177aa3 authored about 4 years ago by Chris Bielow <[email protected]>
minor refactor

b51d770148f173caacf3c1382a4064094e9b9a7d authored about 4 years ago by Chris Bielow <[email protected]>
[API, DOC] updating references and documentation for IsotopeLabelingMDVs class, adding member function prototypes

e538ad49cddeddb562f53cb7e89afc320a8c02af authored about 4 years ago by Ahmed Khalil <[email protected]>
fix wildcard

1752b1bcb8bb10ffeb41e0f61bce3313e7ca009c authored about 4 years ago by jpfeuffer <[email protected]>
fix Qt install name

1726627a6c291c86b2a133d707cbfbd64ceaf7ec authored about 4 years ago by jpfeuffer <[email protected]>
Check Qt install names

a1c5214c266f745ae38d39866b7ae160b086a98a authored about 4 years ago by jpfeuffer <[email protected]>
Try binding and embedsignature

1851a05cf81ba3524582cf1727630675989d90e5 authored about 4 years ago by jpfeuffer <[email protected]>
multithreading in FLASHProFilter

d09b9161a9f299127ffdb7edee74412283829b08 authored about 4 years ago by kyowonjeong <[email protected]>
macOS high res

937dac2d6fa8486848f6fc26a1b0c3ed4e90df44 authored about 4 years ago by oliveralka <[email protected]>
revert import change

32709e48338230450d0acc2f38dcf1bba9629d3b authored about 4 years ago by jpfeuffer <[email protected]>
Use language_level depending on python version

1937e97a8b581867b040460af264748b936f11a3 authored about 4 years ago by jpfeuffer <[email protected]>
SwathWizard icns

0e2142d761999286c981a9116f91823c520af4fb authored about 4 years ago by oliveralka <[email protected]>
try with pyopenms.submodule

553b750d6a2e8a078869749ef28d85768d958c52 authored about 4 years ago by jpfeuffer <[email protected]>
minor rework

77f9d9f833191d61f921de155fd487e8ba2219b9 authored about 4 years ago by Chris Bielow <[email protected]>
Test all_modules

be5ea29f6cccb99893ef09d0afcd53ed52c1b10c authored about 4 years ago by Oliver Alka <[email protected]>
fix layer name of single chromatograms by always using filename as basename instead of old layer name (before, the `[index]` was stacking up, when switching between chroms, .e..g file[1][2][1] ...)

c3881e0ceb3ab2d8e359fb27beade90fe22dfb9a authored about 4 years ago by Chris Bielow <[email protected]>
avoid QMdiArea::activeSubWindow because it might be nullptr if TOPPView is not active.

9fc1c1018f1d7627660946082b8f6fc08fc114aa authored about 4 years ago by Chris Bielow <[email protected]>
public member to method (allow for breakpoints)

e00ff787a3141be6d75a3fe7894b28221841997f authored about 4 years ago by Chris Bielow <[email protected]>
fix disabled tab

a49a7c2d1265189ead795b89d7e10e34ba025ffc authored about 4 years ago by Chris Bielow <[email protected]>
oops

8eba8168af0025f0d24deb955e1e8cee856af1ab authored about 4 years ago by Julianus Pfeuffer <[email protected]>
multithreading in FLASHProFilter

0a0e80d8272fc8dc63d92866e02ea82158d560a0 authored about 4 years ago by kyowonjeong <[email protected]>
add correct import

65e5ebd3b5bfc4a81e911204866d09b8e4c5523c authored about 4 years ago by Julianus Pfeuffer <[email protected]>
activate GH actions

9a5ccf647bdaccc9e2c781acc54df3673915125f authored about 4 years ago by jpfeuffer <[email protected]>
level 3

c509c50bab9b9586af7d63ce4bf7b53ae06bdeaf authored about 4 years ago by jpfeuffer <[email protected]>
Update setup.py

26c850c6bf0f251b6bddc039c2fdc8729e4e410c authored about 4 years ago by jpfeuffer <[email protected]>
Update IdXMLFile.h (#4919)

5098fb0a209cfd94eea247d8e59b6942924fe7c9 authored about 4 years ago by Timo Sachsenberg <[email protected]>
[FEATURE] FIAMS CV params in mzML (#4909)

* [FEATURE] FIAMS CV params in mzML

* Update MzMLFile_1.mzML

* Update MzMLFile_test.cpp

...

d49f82e005a770bf21278b516cbcbefdb8bb48eb authored about 4 years ago by jpfeuffer <[email protected]>
updated OpenSWATH param changelog (#4915)

86df9be8a91dec7b2724f60af5448b099d7c9e60 authored about 4 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #4916 from cbielow/QC_example

[DOC] make QC workflow runnable on examples

43dd3703e275b8bf5f9c42b967c4604c4b261dba authored about 4 years ago by Chris Bielow <[email protected]>
add FASTA DBs for QC

646b4b8d0024535d4cd9a1daea1af08923c3909f authored about 4 years ago by Chris Bielow <[email protected]>
make QC example runnable

bb717df73408ebda44d4795b6719fb6f8b9887e4 authored about 4 years ago by Chris Bielow <[email protected]>
New OpenSWATH parameters (#4153)

* codeship

* codeship 2

* codeship parallel 2

* codeship test

* XServer

* fix

...

663c0662cdf483976729c779632e4f968a8c9ac3 authored about 4 years ago by Hannes Roest <[email protected]>
Addon changes for pyopenms (#4892)

* Update function names in addons/ConveHull2D.pyx

* Update function name align in addons/MapA...

0edeedbd0f8d0b784af9ab48d4cbc65273c0a22e authored about 4 years ago by Shekhar Shukla <[email protected]>
[API, TEST] implemention and testing for IsotopeLabelingMDVs::calculateMDVAccuracy

04b3a70499e703f885d8e57ba6d19c979f968fb9 authored about 4 years ago by Ahmed Khalil <[email protected]>
[FIX] fix error in SQLite-based ID file format (constraint on optional table)

10bf87afba1071d675047920ff8841f042071720 authored about 4 years ago by Hendrik Weisser <[email protected]>
Merge pull request #4908 from cbielow/fix_stopwatch

[FEATURE/FIX] re-implement StopWatch to allow for 'resume()' and querying time while still running

b05b534a597199517f2a2be792425e07ab7bf902 authored about 4 years ago by Chris Bielow <[email protected]>
fix missing symbol

66f67aacabb16c941eaa3090d7daa215e2a03c54 authored about 4 years ago by Chris Bielow <[email protected]>
[FIX] fix error message in 'AASequence' (mod. not found)

8029c9d17da6b1c2f7bcc2481a660a9a6a05adba authored about 4 years ago by Hendrik Weisser <[email protected]>
avoid multiple definition warning

b43cfbf756a873d736f524298f4054d818ab0a24 authored about 4 years ago by Chris Bielow <[email protected]>
unused variable fix

b0d45db31382e4f210c8c5fdb405bfa40f56a83e authored about 4 years ago by Chris Bielow <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into idfile-integration

889a0adea92c688a23e434102b2b65bc04e844ad authored about 4 years ago by Hendrik Weisser <[email protected]>
CI fixes

2edacdef0b625a02090ec8e809a856ef6598bc8c authored about 4 years ago by Chris Bielow <[email protected]>
fix CI errors

ec89d8e9a4327f6a13583238a00f3b3e4db231bb authored about 4 years ago by Chris Bielow <[email protected]>
add FLASHProFilter in topp

ec50d05094010b5ed9458774e60566eefb01812e authored about 4 years ago by kyowonjeong <[email protected]>
move implementation to cpp

8e0121631ba525421c4a617114db066b80011700 authored about 4 years ago by Chris Bielow <[email protected]>
[DOC] Param changelog for 2.6 (#4910)

* [DOC] Param changelog for 2.6

* Update CHANGELOG

7b85bfbd6e08bf8cd724e1259c46683ce3b9cbbe authored about 4 years ago by jpfeuffer <[email protected]>
fixing dll import/export

589f115d94f68a2dd42236de1127c83819e05dc9 authored about 4 years ago by Chris Bielow <[email protected]>
refactor ViewTab-Widgets into separate class

5fc8db65ed4618b2b1b63dc615e816e30c2cd5cd authored about 4 years ago by Chris Bielow <[email protected]>
added missing endProgress() calls

ef0757bf24038fb72db95450c343999d57476701 authored about 4 years ago by Chris Bielow <[email protected]>
remove invalid nested progresslogger

609e1937b332c476d9180a13b6a464054fd258d6 authored about 4 years ago by Chris Bielow <[email protected]>
fix

a921ed8b19cb21e68b560f3fc95a9536e2166452 authored about 4 years ago by Chris Bielow <[email protected]>
fix

c91bcc3f36bd05a3dae99912a7bea68c5f173f79 authored about 4 years ago by Chris Bielow <[email protected]>
re-implement StopWatch to allow for 'resume()' and querying time while still running...

a7cf8f38b9b8d062bab8994752b7ae42d956c9ec authored about 4 years ago by Chris Bielow <[email protected]>
minor rename

86ce04968081d965a21b9619f67012dbac4056d1 authored about 4 years ago by Chris Bielow <[email protected]>
add FLASHProFilterAlgorithm

67b3db45036ccf43b7933227e23ec300acb869b1 authored about 4 years ago by kyowonjeong <[email protected]>
RNA avg model applied with

input arg "use_RNA_averagine 1"

85d266e7d68faa5acec531c90093e8fb2b7dd6af authored about 4 years ago by kyowonjeong <[email protected]>
Merge pull request #4893 from dmccloskey/fix/OptionalStrict

made strict_ param in MRMFeatureFinderScoring an optional parameter

2a6f1cb1fe74c2ff5013d63b678b8448ff7dd532 authored about 4 years ago by Hannes Roest <[email protected]>
[API, TEST] implemention and testing for IsotopeLabelingMDVs::calculateIsotopicPurity(...)

a106c4e6a8843bee36e8f78479ef307bd539ed32 authored about 4 years ago by Ahmed Khalil <[email protected]>
minor rename

ba015d878755e744a1c1b2a74dd748f2cc0a5732 authored about 4 years ago by Chris Bielow <[email protected]>
fix: GLPK thread safety (#4902)

* fix: removed unneccessary calls to deallocate GLPK memory when using COINOR and added some str...

cabf408f039c08a4dcf2008da6a3581527c0c5a2 authored about 4 years ago by Douglas McCloskey <[email protected]>
Merge pull request #4903 from jpfeuffer/fix/keepSamePeps

[FIX] mzTab opt columns bug, now also for PEP section

6f843005b52fb69f3a3823e09a626d3f78845c4f authored about 4 years ago by jpfeuffer <[email protected]>
Added consensusID to software CV terms

437331fa4a1564304839d30cb9b89cba52a5836f authored about 4 years ago by Julianus Pfeuffer <[email protected]>
Adapted tests

1ae7e434dcae644db508b356ea49a79b283574fc authored about 4 years ago by Julianus Pfeuffer <[email protected]>
fixes mzTab opt columns bug, now for PEP section

53e09e6a72cee069a2e51a34d6850f59afce4e4e authored about 4 years ago by Julianus Pfeuffer <[email protected]>
[API, TEST] implementing and testing IsotopeLabelingMDVs::isotopicCorrection(...)

6fa36d16ecaffaefd65608c043e731d8658989d9 authored about 4 years ago by Ahmed Khalil <[email protected]>
Merge pull request #4898 from jpfeuffer/fix/keepSamePeps

[FEATURE] Improve PSI MS ontology support in mzTab

bc70c82ab7139ce0553e925166755a1938ff6b40 authored about 4 years ago by jpfeuffer <[email protected]>
gcc tries

10a54bf6a2f35dfb8f079a0ee7a34b48c6f081f6 authored about 4 years ago by Julianus Pfeuffer <[email protected]>
old gccs..

7ec04791cdf05171c32e5fe187e2b386dd61b8f0 authored about 4 years ago by Julianus Pfeuffer <[email protected]>
Adapt tests to bugfix

310ca1ff33c597fc6dce8f20d7d70145a70312aa authored about 4 years ago by Julianus Pfeuffer <[email protected]>
how did it not fail on my computer???

bcd964772109d3ae3fe4aa082bf03292352311d5 authored about 4 years ago by Julianus Pfeuffer <[email protected]>
Fixes bug with metavalues and whitespaces. Fixes other tests.

8484b3cdaa8a9eb7af80d0b1acb18e561248aa82 authored about 4 years ago by Julianus Pfeuffer <[email protected]>
Added more CV terms. Small restructuring.

9a2e949494b882b28d71648ebfb192dfb2552712 authored about 4 years ago by Julianus Pfeuffer <[email protected]>
Carry over Percolator infos in ConsensusID. Adapt some CVs.

e26d9c06e4f5e50587d59ef35a3202090f714cce authored about 4 years ago by Julianus Pfeuffer <[email protected]>
Apply GHactions pyoms path fix from #4779

571d820633365b43aec243bb9829df8a61358fce authored about 4 years ago by jpfeuffer <[email protected]>
MzMLToMatlab.cpp added in utils

b8860e640d6881cf8bf95bb6613bf610999b8c5b authored about 4 years ago by kyowonjeong <[email protected]>
Improve PSIMS ontology support in mzTab

6c43645203ff96f36297b72df8cbb7ba55b83681 authored about 4 years ago by Julianus Pfeuffer <[email protected]>
[COMMENT] IdentificationData: added to-do comment (adduct names)

301ea003ff57f8b0f37419edc2cb4133c6df2900 authored about 4 years ago by Hendrik Weisser <[email protected]>
[LOG] FeatureFinderIdentification: added explanatory message for negative 'targets without features' number

e5c5cee7aef4a0ff15a98ebd173c85880a840055 authored about 4 years ago by Hendrik Weisser <[email protected]>
Merge pull request #4896 from cbielow/doc_mte

[DOC] add missing INI documentation for TOPP tools

bed0ff7eb2d5bbd555789a1b3243ab633f3c65bc authored about 4 years ago by Chris Bielow <[email protected]>
add missing INI documentation for TOPP tools

a7f8b3de135c477f6f483497c3ab5d8d467731c6 authored about 4 years ago by Chris Bielow <[email protected]>
update percolator parameters (#4895)

* [PARAM] set post-processing-tdc = true by default

* [TEST] fix Percolator TOPP test

* [T...

7c10a168507f9183da9fb15376e4bfc2225804fb authored about 4 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #4866 from Waschi97/feature/exportDBSuitToLibrary

DatabaseSuitability functions exported into the library

8ea152127ec9ebdca4d15b92c93c72468d4c977a authored about 4 years ago by jpfeuffer <[email protected]>
fixed tests, sort increasing

9e720c5415fdc5156d5776d81a0ec7945cbd5e64 authored about 4 years ago by Tom Waschischeck <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into feature/exportDBSuitToLibrary

merging to fix dbsuit test error

8777715ded59163f0b51e67770d0c75408f2824c authored about 4 years ago by Tom Waschischeck <[email protected]>
[FEATURE] FeatureFinderIdentification: add label with ID to features (for TOPPView)

a2f58c649c25ca90cef65242f16f4cda0fc43605 authored about 4 years ago by Hendrik Weisser <[email protected]>
[FIX,INTERNAL] FeatureFinderIdentification: fixed handling of external IDs; some refactoring

ae3eeb3e49d0e17ea734c8f26f61e41f64b24906 authored about 4 years ago by Hendrik Weisser <[email protected]>
always use traML for valid formats (#4863)

1f4bc12263daa1f0c4aaea11c208f27947e2d257 authored about 4 years ago by M Bernt <[email protected]>
PR changes, min to max change

56fb8a44a0db67ef883310cc453d4be2fca032bf authored about 4 years ago by Tom Waschischeck <[email protected]>