Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/OpenMS

The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS

Update MzIdentMLHandler.cpp

b284fec1c7c8f04c5f084a69c5ece2c1929bab4b authored almost 4 years ago by Timo Sachsenberg <[email protected]>
Update Tutorial_AASequence.cpp

3cceab17ddcb514eb1afed04017228e576463571 authored almost 4 years ago by Timo Sachsenberg <[email protected]>
[FEATURE] added getMZ as convinience method to AASequence

9ae9d5fbe9f87d732cd20233f85fe637c8d7d9af authored almost 4 years ago by Timo Sachsenberg <[email protected]>
[Performance] Some improvements based on profiling ProteomicsLFQ

6d4daabe1015ed5e0019a9a6352c797ff46e0c14 authored almost 4 years ago by Julianus Pfeuffer <[email protected]>
removing redundant blank spaces

205a54573cd7d281b464e4a20391587ff7a8dbc5 authored almost 4 years ago by JeeK <[email protected]>
Polishing and adding comments

3057edf9acdc5146d80877a175d94a8e62e9d3ad authored almost 4 years ago by kyowonjeong <[email protected]>
[REFACTOR] introduce behavior base class (#5027)

* [REFACTOR] introduce behavior base class

* address reviewer comments

591cc3f1f130374b5aca12f38cd4c7b1fbf65508 authored almost 4 years ago by Timo Sachsenberg <[email protected]>
Topp view fix pref (#5031)

fix Preferences Dialog not instantiable

18d4410d5bcd338751ccc4f039a872535ea58c27 authored about 4 years ago by Chris Bielow <[email protected]>
Merge pull request #5030 from OpenMS/mergemaster

Merge remote-tracking branch 'origin/master' into mergemaster

961ea416b53e65c31655412b459e38974300e01b authored about 4 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #5024 from OpenMS/fix/consID_oldMode_proteins

[FIX] ConsID not taking over proteins in "linking" mode

2cbd5691c8a428e24b2d738b90cbecc11763e12c authored about 4 years ago by Julianus Pfeuffer <[email protected]>
fixing Jenkins builder error

8a1f7cfc6615c7a78131d44abaabc398ad137270 authored about 4 years ago by JeeK <[email protected]>
Merge remote-tracking branch 'origin/master' into mergemaster

efe3a78502007e5bac0836b27cbaa911dd532cb9 authored about 4 years ago by jpfeuffer <[email protected]>
15N mod file for XTandemAdapter (#5026)

* [DOC] fix doxygen warnings

* more DOC fixes

* add 15N config file for X!Tandem-Adapter t...

6e8378b60580115ec23b5f2de4c5f32d19f8de69 authored about 4 years ago by Chris Bielow <[email protected]>
adding header file for setprecision

e2a044655fae29306fc730ff3a5709c769b28d59 authored about 4 years ago by JeeK <[email protected]>
Merge branch 'develop' into feature/FLASHDeconv

191caf097c748415b42cfcf8830ff36351b1dae6 authored about 4 years ago by JeeK <[email protected]>
change the location of first OPENMS_LOG_INFO

05d737d2815b415e4a64da005c81e3a5b9abf5df authored about 4 years ago by JeeK <[email protected]>
Polishing #include in .h files...

41f9820cc80f8a5d78b5e0bdd50232d1ea483286 authored about 4 years ago by kyowonjeong <[email protected]>
Replaced pointers with vectors and vector<vector<>> with Matrix

fca7963e642e3bd4ec4f1346d6521a211dbdb8cc authored about 4 years ago by kyowonjeong <[email protected]>
Review comments

739c3beb8ac64d878175e1d73611270be123703e authored about 4 years ago by jpfeuffer <[email protected]>
Addressed most comments by Timo. Major modification is still necessary.

caf8b806b711743a87890382874fcb9473dd66c7 authored about 4 years ago by kyowonjeong <[email protected]>
remove files not needed

24e6f4a4fb25ae7494ab68bd401618cbc255f966 authored about 4 years ago by JeeK <[email protected]>
[FIX] ConsID not taking over proteins in "linking" mode

0b9d9a82a0464def594346ec8d74139a8becd759 authored about 4 years ago by jpfeuffer <[email protected]>
[DOC] fix doxygen warnings (#5021)

* [DOC] fix doxygen warnings

* more DOC fixes

7b706518faf289213158507a5be9d0ce30c440f1 authored about 4 years ago by Chris Bielow <[email protected]>
Merge pull request #5022 from ahmedskhalil/fix/5020

[FIX] Failed to compile with VS2019 MSVC 14.2

2c50ccdbaac0a32df4a35250867768d0807a9b7f authored about 4 years ago by Chris Bielow <[email protected]>
[DOC] Updated Authors list

ad0306c217cad0dbe0bed5990bbf7ee9433b4e85 authored about 4 years ago by Ahmed Khalil <[email protected]>
[FIX] Reinstating a missing include which std::sort depends on - MSVC Error C2039

9f0c40c3f9ae4023ae5a9fdac39b23d1ba740c83 authored about 4 years ago by Ahmed Khalil <[email protected]>
Merge pull request #5018 from OpenMS/feature/gitpodExtensions

[GITPOD] Better integration of CMake plugin with debugger + update of extensions

84da68a91f805310193d589915205b3af76ac25b authored about 4 years ago by jpfeuffer <[email protected]>
Update .gitpod.yml

c59be09c1ffa3927f5a2142aee6eb5919c961f96 authored about 4 years ago by jpfeuffer <[email protected]>
[GITPOD] Better integration of CMake plugin with debugger + update of extensions

117953850b73848c1663fa4a4a3c4f372acfe062 authored about 4 years ago by jpfeuffer <[email protected]>
resolving some comments on minor issues

c235cbff98c743d127b83784ecdfe3dcd5ac3398 authored about 4 years ago by JeeK <[email protected]>
remove not needed file

afa501c9a75e0c545715f2553e8dffa4556026ee authored about 4 years ago by JeeK <[email protected]>
adding comment

71abf06386e70f64c4d4ebf79c67c9bd83ea510f authored about 4 years ago by kyowonjeong <[email protected]>
adding comment

78ce362ed8fefce349f802ca38402381761f431f authored about 4 years ago by kyowonjeong <[email protected]>
Update MapAlignerTreeGuided.cpp (#5013)

0e538d9141eaabad8f99fc6309b8c091f6340527 authored about 4 years ago by Timo Sachsenberg <[email protected]>
mzTab move static to member (#5012)

* move from static to member

* disabled FFId test 4

Co-authored-by: timosachsenberg <sachs...

886cdb2cee1b91db3c5284e6268420df8293a17a authored about 4 years ago by Timo Sachsenberg <[email protected]>
adding comment

66a32482c531d13f808f912cd3d8206490ac2cd7 authored about 4 years ago by kyowonjeong <[email protected]>
adding comment

00b6acc2e6e71f3608bdaa90cd990b8623e33fc2 authored about 4 years ago by kyowonjeong <[email protected]>
ToppView: Show selected layer in Apply TOPP tool dialog (#558) (#5007)

8db2e8f49d66716e81a7da673f527ba05ba36e02 authored about 4 years ago by Lukas Zimmermann <[email protected]>
[FEATURE] first prototype of Annotation1DVerticalLineItem (#5005)

* Adding Annotation1DVerticalLineItem based on Annotation1DDistanceItem

* Vertical line drawi...

ee16987dc6606d7135e575cf8d64a0214243425a authored about 4 years ago by JihyungKim <[email protected]>
fix variable names, rename enum due to macro clash, some refactoring (#5004)

efde088ad3489a840d370fec57a92f8857558cc7 authored about 4 years ago by Chris Bielow <[email protected]>
fix variable names, rename enum due to macro clash, some refactoring

efe0fce75beb1eaa040ab40c49aa737bcdae0ae7 authored about 4 years ago by Chris Bielow <[email protected]>
fix name clash of FeatureFinderIdentification test (#5003)

* fix name clash of FeatureFinderIdentification test

in particular the clash of the output na...

860dfe76b6b88d3b0b40a5530a09425d3412f607 authored about 4 years ago by Timo Sachsenberg <[email protected]>
Update OpenMS_Tutorial.doxygen (#5000)

* Update OpenMS_Tutorial.doxygen

* Update OpenMS_Tutorial.doxygen

415864ce7073905eab788b76ac1a7a56cfe135d1 authored about 4 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #4981 from cbielow/OSW_datamodel

an OSW datamodel

6c0ddc0cad2275bf3ad70b7c397981d30956e5bb authored about 4 years ago by Chris Bielow <[email protected]>
FIX: CSI:FingerID parsing (#4976)

* FIX test CSI:FingerID

* REFACTOR path parsing

* [FIX] style, duplicated comparison funct...

708e48ceef2f26a416eb6ef0bd26e26e2de4385a authored about 4 years ago by Oliver Alka <[email protected]>
fix pyBindings

9523d91aa8ba74f54a68f5372c919eb88aafe360 authored about 4 years ago by Chris Bielow <[email protected]>
[DOC] improvements

51414bdab91746bf004fd7279c0ae7ea2ef4eb53 authored about 4 years ago by Chris Bielow <[email protected]>
some refactoring

4c286425a0698341ec059e75eb28f6ebb493ea8c authored about 4 years ago by Chris Bielow <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into OSW_datamodel

a2f292e4ce472e77dbcdc8a05c90b6e8a3d936b4 authored about 4 years ago by Chris Bielow <[email protected]>
fix CI

cf4ff08734312fd22d37992807514d73951a57cd authored about 4 years ago by Chris Bielow <[email protected]>
make OpenSwathDIAPreScoring outputs mandatory (#4999)

I think I forgot this in https://github.com/OpenMS/OpenMS/pull/4443

If not given causes a seg...

3052bef486bd8c74e7f1c6465d2557051e1c4e30 authored about 4 years ago by M Bernt <[email protected]>
better data model with stepwise loading

0303e9237ca1e0410f1888ab00950c75d19eaa01 authored about 4 years ago by Chris Bielow <[email protected]>
[CI] Add --output-on-failure to travis ctest invocations (#4983)

adda0846e59f6630ce45140a94bfbf4ddb38a6d7 authored about 4 years ago by Leon Kuchenbecker <[email protected]>
fix more warnings

73d1d04e37af188ca7873570c7c7ef1d148c8bf2 authored about 4 years ago by Chris Bielow <[email protected]>
fix warnings

2bb0b4bc8297451e001353730c90f9cc33ee1694 authored about 4 years ago by Chris Bielow <[email protected]>
more fixes

8813055d51d8858454875c2b1530e2821817a609 authored about 4 years ago by Chris Bielow <[email protected]>
Scan number as in spectrum + toppic output for MS1

4f7bfa5d0a16706fa95da0fd7fc084e69a75d5c3 authored about 4 years ago by kyowonjeong <[email protected]>
revert

102bddfd911d0610d97d6e95449037eb80712323 authored about 4 years ago by Chris Bielow <[email protected]>
[API,TEST] Adding an option to the isotopicCorrection functions to be able to use the internally stored derivatization agent correction matrices, added TBDMS correction matrix.

773dbdb397bfc1d0e6fc834496b1eedce8176cec authored about 4 years ago by Ahmed Khalil <[email protected]>
[FEATURE] retain top n spectra (better spectrum = better PSM) (#4994)

* [FEATURE] retain top n spectra (better spectrum = better PSM)

* moved exception code out of...

d17026048a70f95973867bf618b46eb0c222e4d4 authored about 4 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #4985 from OpenMS/doc/htmlHeaderWarning

[DOC] Add opt-in include to display a warning and link to latest docu

55598cf39c73a2092365fbdb51e63defa9b29c6f authored about 4 years ago by jpfeuffer <[email protected]>
Merge pull request #4984 from OpenMS/doc/toollinks

Make documentation links point to the exact version of the tool

22ef09f924dcfb8538eb0943bf5571ca2af3b4e5 authored about 4 years ago by jpfeuffer <[email protected]>
[fix] projection button (#4987)

Co-authored-by: timosachsenberg <[email protected]>

531eebddd090ab70f34e663f5108a594b6cdd14c authored about 4 years ago by Timo Sachsenberg <[email protected]>
properly load OSW data in batch

13b7d986da1476f2d358ea39ac2de8330db4049e authored about 4 years ago by Chris Bielow <[email protected]>
move ffsh to util list

1b57847d2adcf333ef08ade0fd3542d70aa888f5 authored about 4 years ago by jpfeuffer <[email protected]>
Make FFSH Util

615c0a199b10c0024a1da34be9ef96a8b305c614 authored about 4 years ago by jpfeuffer <[email protected]>
some fixes of var names and strings

ba840a2c946e0a3fa79fadaff6561be7b446c11f authored about 4 years ago by jpfeuffer <[email protected]>
Merge pull request #4989 from oliveralka/test/high_res_macos

TOPPView support for HiRes displays (macOS)

120354b6d21503fabf04ce1e31b72bb8f840ce2c authored about 4 years ago by jpfeuffer <[email protected]>
code comment

1e90b043de25ae43961afe3f97ce632a135628cf authored about 4 years ago by jpfeuffer <[email protected]>
Function docu

d9e1e42cb9caf1fca10ef269c64f3788d9b04efd authored about 4 years ago by jpfeuffer <[email protected]>
Refactor and support non-release builds

We have to make sure that actually release/master git information is present now.

9a53c737745c746f8eb3b5ef7cb17e49d64f1ff2 authored about 4 years ago by jpfeuffer <[email protected]>
Update PULL_REQUEST_TEMPLATE.md (#4988)

6089d20e43906614534a2ebd0a43a759858de026 authored about 4 years ago by Timo Sachsenberg <[email protected]>
error

c414c277f87dfb223090c6af9e9cdb5c4540c78d authored about 4 years ago by jpfeuffer <[email protected]>
[DOC] Add opt-in include to display a warning and link to latest docu

554cae6c8fd363fd5ce569d50deef3492b593b94 authored about 4 years ago by jpfeuffer <[email protected]>
mixup paths

fc4ea339a8bcdf29e4c2080a6a8028fbf70426b9 authored about 4 years ago by jpfeuffer <[email protected]>
Use OpenMS version for docu, since tool version may be overwritten

333e543a10e2d2407e3756a926e90c04d14225ae authored about 4 years ago by jpfeuffer <[email protected]>
Make documentation links point to the exact version of the tool

ea2ec7b0360dab46677795fbedbad8a9be1b2c03 authored about 4 years ago by jpfeuffer <[email protected]>
Releasing version 2.6.0

ca61434b49cb6472f965bef328c97e67764a619b authored about 4 years ago by openms-jenkins-bot <[email protected]>
horrible syntax

7cdd7f48cde0dd6203ecba1d3e643ecd8729ba5c authored about 4 years ago by jpfeuffer <[email protected]>
[FIX] reapply changes from master (#4980)

* [FIX] reapply changes on master

* Update Scoring.cpp

* Update Scoring_test.cpp

* Upda...

2b76e9f832919a2586ec12d1d88d09940732cf81 authored about 4 years ago by Timo Sachsenberg <[email protected]>
first data model (incomplete)

2ee8378fbdde61267fefeb12e5579f6bd3a5b45b authored about 4 years ago by Chris Bielow <[email protected]>
Also build wheels for Release tags

c26f752f8f8d763e376c114d6c78e2c8fda2ceb3 authored about 4 years ago by jpfeuffer <[email protected]>
[FIX,TEST] Utilizing EmpiricalFormila(..) to generate IsotopeDistribution(s)

73a9fcf9d0dfe30c5e70f8b147474fdc4fb399f6 authored about 4 years ago by Ahmed Khalil <[email protected]>
Merge pull request #4973 from jpfeuffer/feat/whiteExportBG

[FEATURE] White BG during 2D export in TOPPView.

17c8bbb68bb6d44d1d49989e9c58a38901ac60a8 authored about 4 years ago by Timo Sachsenberg <[email protected]>
Update SpectrumWidget.cpp

45777a1469d191b1a69827ae49fa262b6e3840f3 authored about 4 years ago by Timo Sachsenberg <[email protected]>
Review comments

b9fac91951384e6e256318d1b44d505c0234d750 authored about 4 years ago by Julianus Pfeuffer <[email protected]>
[NOP] newline

c0065f962d91bd202b18d3d8f7fe1e28660d3c47 authored about 4 years ago by Julianus Pfeuffer <[email protected]>
update contrib to master heads

dc42b1b01944a516dc6c94574060d919a6fce687 authored about 4 years ago by Julianus Pfeuffer <[email protected]>
[FEATURE] White BG during 2D export in TOPPView.

982d8178c2b40a439cc888cee67047dfb015cd7e authored about 4 years ago by Julianus Pfeuffer <[email protected]>
[FIX] modifying code to the desired coding standard

bc2929a617568598b65729fa188a662ac54e07af authored about 4 years ago by Ahmed Khalil <[email protected]>
edge removed, polishing MS2 scoring.

3b6574847f112444766c21aa4c8bb630db377c9c authored about 4 years ago by kyowonjeong <[email protected]>
Merge pull request #4971 from bernt-matthias/topic/rm-sequest-adapter

remove last traces of SequestAdapter

5e1955dd1f07282105944d4f5e5370a2ca9b3286 authored about 4 years ago by Chris Bielow <[email protected]>
remove some traces of an apparently apsent tool

b1303f44eec1157db724303760ae9c5fb253e11b authored about 4 years ago by Matthias Bernt <[email protected]>
edge removed, polishing MS2 scoring.

19fed3c11f38d2f594b4741748594ec450bcce9f authored about 4 years ago by kyowonjeong <[email protected]>
mz to mass bin edge added in SpectrumDeconvolution.cpp

72ab53f947a1fa00281800399dbf3507b863cfd8 authored about 4 years ago by kyowonjeong <[email protected]>
edit *.plist.in

ca33c9bde5546ac6bf9aec08737e4c6ac695a518 authored about 4 years ago by oliveralka <[email protected]>
less cross-referencing

8367f2ab133ca22c70c6bc5b2c6ef484dfa9ec27 authored about 4 years ago by Chris Bielow <[email protected]>
Merge pull request #4964 from cbielow/toppview_refactor

Toppview refactor & OSW file cleanup

b904c56a437a91364130d6ababccc8483dbc4681 authored about 4 years ago by Chris Bielow <[email protected]>
fix ci

8b25d69eb0734a20355807c1615ef151cb2a659b authored about 4 years ago by Chris Bielow <[email protected]>
review comments

88df6394d353fd9495594af5876158293845f0d2 authored about 4 years ago by Chris Bielow <[email protected]>