Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/OpenMS

The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS

Merge pull request #7144 from enetz/fix/asan_errors

Fix a few AddressSanitizer complaints due to uninitialized variables

9513f435872e6f02cd5f59cb78ccff30b3f57c73 authored over 1 year ago
Update src/openms/include/OpenMS/ANALYSIS/XLMS/OPXLDataStructs.h

9bd12ac4ec848cf80716f9fcca0aa5804e72944e authored over 1 year ago
[FIX] initialize variable in DeconvolvedSpectrum

41231f8bd1753565c9f19c085b5bcaf50475f32c authored over 1 year ago
[FIX] initialize variable in PeakGroup

d6219f8fc170fe86f35bf3db0f5ca2435809ff48 authored over 1 year ago
[FIX] initialize variables in OPXLDataStructs

b55ccb4222e1a23b610c2ac07cfc66bf52bcce43 authored over 1 year ago
Merge pull request #7129 from OpenMS/jpfeuffer-patch-5

[mzIdentML] fall back to name element for DatabaseName

55094ca9c98949c8d8657d233267a56978f3de8d authored over 1 year ago
Merge pull request #7142 from cbielow/doc_flash

FlashDeconv: add citation to TOPP tool and more docs

0a356e855505b99ddfe37c7688ed6d2e08e33682 authored over 1 year ago
add citation and more docs

f64649e618778fb6901a6a29bf98026c44630bd5 authored over 1 year ago
Merge pull request #7139 from cbielow/fix_TOPPAS_categories

[FEATURE] TOPPAS: search tools by name

3d84aa723a87baf383c2cb597e190ddd2a99e409 authored over 1 year ago
update changelog

a2881149c21dc33f81831d760cc1d37cf7085b57 authored over 1 year ago
Merge branch 'fix_TOPPAS_categories' of https://github.com/cbielow/OpenMS into fix_TOPPAS_categories

28d6dbc32edb13393038073f116d86c7164845d8 authored over 1 year ago
gcc/clang choke on `inline` in cpp (which VS puts there for some reason when asked to create an implementation)

10f545d75fdd7621b932f701a7f58e2fb59329c1 authored over 1 year ago
Update src/openms/source/FORMAT/HANDLERS/MzIdentMLDOMHandler.cpp

9a5638236e0c9f89b42ec827e669f07066cac5fd authored over 1 year ago
Merge pull request #7140 from OpenMS/disable_failing_sirius

disable failing SIRIUS tests

0e12b6ab0c02f46fec7331cd2e87c7d8e9997dc7 authored over 1 year ago
disable_failing_SIRIUS_tests

8b7a5afea09d15fdccd2f84a8a5b32b55b403ec1 authored over 1 year ago
Merge branch 'develop' into fix_TOPPAS_categories

124f7b3e67e78b652d9b4249c601f0ddf6f7452d authored over 1 year ago
Merge branch 'fix_TOPPAS_categories' of https://github.com/cbielow/OpenMS into fix_TOPPAS_categories

f591e3c0ca50cf9c997c55d0aa8f8aa9e96bb596 authored over 1 year ago
Feature: filter TOPP tools in TOPPAS by name

2a9802ad5f1f419bf5b5cd1d280682119a8ad76e authored over 1 year ago
Merge branch 'develop' into jpfeuffer-patch-5

777058779f23090ce49352ee20fab15eb053dd74 authored over 1 year ago
Update CHANGELOG

17a07f8bdf78e471a26e7869a33004fd046ec510 authored over 1 year ago
Merge pull request #7138 from OpenMS/develop

sync

55f52b49f70fa9c049564186d356bdd79965c3da authored over 1 year ago
Merge pull request #7136 from OpenMS/disable_rsync

disable rsync

cc06e8f422e08fd6c0e39d8060713dad0ece0032 authored over 1 year ago
Merge pull request #7137 from OpenMS/develop

sync with develop

b9c1ffa944e60280ddc057377e537adea58f4079 authored over 1 year ago
disable rsync

because it led to empty folders in the buildarchive

9bdbcd8e64e784fbc2f0272875d3c0e8e090e3de authored over 1 year ago
Merge pull request #7134 from cbielow/fix_TOPPAS_categories

fix FlashDeconv docu (missing parameters)

a05f1e72e8f9d70e8556a9cc32150f812ba36181 authored over 1 year ago
Merge branch 'develop' into fix_TOPPAS_categories

22bfbb9e0ddf3b35054df8db58a746818817879a authored over 1 year ago
fix flash docu (missing parameters)

bd7ab792d8d8a45fbd63ce9886e469a30fe1fdfb authored over 1 year ago
Merge pull request #7132 from cbielow/fix_TOPPAS_categories

Fix TOPP categories and make OpenMSInfo a TOPP tool

f7b13a18952a361daae7ba6c0f0a032ea971a36f authored over 1 year ago
Update CHANGELOG

8f114b858c369f8637a1f9b0c84b172d4956797e authored over 1 year ago
testing manylinux2014_x86_64

a92d15cdb194ab057980adb4017d1121eb89dcb2 authored over 1 year ago
testing manylinux2014_x86_64

ad363735a6e4218fcd276d870d0655b432ae5171 authored over 1 year ago
Merge branch 'fix_TOPPAS_categories' of https://github.com/cbielow/OpenMS into fix_TOPPAS_categories

25723835b22d3b0be13a3f124e95203f76791023 authored over 1 year ago
testing manylinux2014_x86_64

b8ef8f2d17b720f125f8f7844398eb60f9717375 authored over 1 year ago
some last fixes to TOPP listing and OpenMSInfo

b1b82f3c84fafa08cfc0a0cb517fa1dcaef5da52 authored over 1 year ago
testing manylinux2014_x86_64

4b34e44c066a55d0631e60785c351fee0478aedc authored over 1 year ago
testing manylinux2014_x86_64

88a1c57e34951562767f4db524dad5384589e344 authored over 1 year ago
testing manylinux2014_x86_64

62fd5e8a6e873934d7fd8d5a51f56d91f1cae200 authored over 1 year ago
testing manylinux2014_x86_64

9bbbe1242cf7a7bcb7ce4000d06829dca581e584 authored over 1 year ago
testing manylinux2014_x86_64

60ab68ef51d7b1e959794d0b142be08dcf54439e authored over 1 year ago
testing manylinux2014_x86_64

51c6855c4e0ffb28762e076a232b623af8f53994 authored over 1 year ago
testing manylinux2014_x86_64

4c3596ed370fc595167202af497d87c1588d11b0 authored over 1 year ago
testing manylinux_2_28

462bd7f19a3c7a42ff7fff462da11337dcf56725 authored over 1 year ago
Merge branch 'develop' into fix_TOPPAS_categories

11f96600c3c77ac75e88088ea35e8bd4c5c9ef38 authored over 1 year ago
reordering complete

4c5f299a0e0a37a17f23e1006760a6ee7699d40e authored over 1 year ago
revert removal of Fido files because they are used in other tests

ac85cdb0b0fbff5ccd8fa96e4e088c1ee5e16a0f authored over 1 year ago
Merge remote-tracking branch 'origin/develop' into release/3.1.0

0c167784aba56132366b46402caa80c8fb8e085d authored over 1 year ago
minor fixes and comments

0951cbf67930c73cd84f409d3be8c5407589d513 authored over 1 year ago
remove Fido leftovers

8093dfed9ffbca867d620c33fda32d69909fd269 authored over 1 year ago
Read RT back in minutes in percolator in file (#7131)

* Read RT back in minutes in percolator in file

* fix RT in idXML

0b6c4dbe9b8a651c6030fb6c9f7a2d0ac613d148 authored over 1 year ago
Update CHANGELOG

feb784fd65c1a3b1443bbc8754ae25215f6d80cd authored over 1 year ago
Update CHANGELOG_PARAMS

d2f528a6792404697316ae66b2c8263bd09a0773 authored over 1 year ago
[mzIdentML] fall back to name element for DatabaseName

fixes #7099

e157a0711e7cc1ebd9fc3101730fab76bc95a4b6 authored over 1 year ago
start fixing categories...

e1e2b0c96f0f76d299079150bc6f51bcedd47e77 authored over 1 year ago
fix category

1fb2ca916660c504e14384fc39a1cf53f5a3f1b2 authored over 1 year ago
Update CHANGELOG

8a4e14c72576083dddc3ae3093b252fa6456d237 authored over 1 year ago
Merge pull request #7122 from OpenMS/poshul-patch-1

Update INIUpdater_1_noupdate.toppas to output correct version

fc0d8746ca915aed1e7b6f980bc986d378f531fc authored over 1 year ago
Merge branch 'develop' into poshul-patch-1

8a36dcd50800935aa2e3d87943e876df1ce11636 authored over 1 year ago
Update CHANGELOG (#7107)

* Update CHANGELOG

* Update CHANGELOG

* Update CHANGELOG

* Update CHANGELOG

69d650f784be7b379c186c1026f5099bf153a780 authored over 1 year ago
Bump contrib from `04d64c6` to `69e61f2` (#7075)

Bumps [contrib](https://github.com/OpenMS/contrib) from `04d64c6` to `69e61f2`.
- [Commits](htt...

ee4b381715c9530c30d9c58fb48e67a16b7d60f5 authored over 1 year ago
add column for area output (#7115)

Co-authored-by: timosachsenberg <[email protected]>

c30f67210930a1f31f096b4072de63732cfd2ad1 authored over 1 year ago
removed unstable (SVM) tests (#7121)

Co-authored-by: timosachsenberg <[email protected]>

e52b5f9584f7f25ae545b2b1dad64c8a107e7720 authored over 1 year ago
Update INIUpdater_1_noupdate.toppas to output correct version

c206ea178661e6b9bedd9ace6190d0c816ddf589 authored over 1 year ago
remove uniqueToProt from mascot psm features (#7120)

4e6c032817bfc05adfa4752da3a4e0cd21f8bbe6 authored over 1 year ago
Merge branch 'develop' into Feature/GenericFileLoad

99a24661c0c155a72dd93b8e5c80378af80ba63e authored over 1 year ago
fix return types of loadExperiment and loadFeatures for FileHandler

5278de3e0efd9cf2a9fc7f4606a29e7c8c01b0ff authored over 1 year ago
[HOTFIX][PIN files] wrong mz loading (#7114)

fixes #7111

342f6524e76a2bab3dcb428ba2f4aa2d6bfe8483 authored over 1 year ago
Merge pull request #7113 from cbielow/fix_mzData

[FIX] make mzData more robust against wrong 'length' attributes for binary data

e40731cc64f4b38e80207371906b3334cc1aedf6 authored over 1 year ago
Update CHANGELOG

0be190018d11d5d489c9c72df2c7ecf30723eb93 authored over 1 year ago
Merge pull request #7109 from poshul/restore_tutorials

readded HTML tutorial parts

67d68ba01749f9c5bea1ffa09554bb07dca8b559 authored over 1 year ago
readded TOPPAS tutorial

65b53b1e9c1d8776d30481859cd85eabb2ab3810 authored over 1 year ago
streamline fileProperties

dce163c3c89df98344e22b039cf66719862dcf47 authored over 1 year ago
cleaned up comments

018226138abe3830981019de774f4dc612b7395d authored over 1 year ago
Added StoreSpectrum to match LoadSpectrum, filled in typenamebindings for all file types that we have

9bb40a3af02182111ed828b60f5f25b0aecc83f7 authored over 1 year ago
make mzData more robust against wrong 'length' attributes for binary data

dbfe4c15c9bc1331d95fe911c79566afaeca6734 authored over 1 year ago
improve fileType testing, reformt Exception

c66eabb54cf5514b7c37ba9857568f9feb602dd6 authored over 1 year ago
Merge branch 'develop' into Feature/GenericFileLoad

9d881caf2e6d1c8106a8002b1fc4ac97940e7604 authored over 1 year ago
fixed a couple of suggestions

a2d8bb68ef31d5b28ee8a46066d33633f42be1dc authored over 1 year ago
update changelog helper to ignore TOPP/UTIL distinction (#7110)

Add FLASHDeconvWizard to the list of GUI apps to ignore

Set the LD_LIBRARY_PATH automatically...

b18b52e0b8219830bef780b5c67a1035b70aeb91 authored over 1 year ago
a couple of fixes

f5e4630626c6685fc7cd07b29cafd8413d3685e5 authored over 1 year ago
clean up from code suggestions

5137fd107697e46dcbc2cd46793edda13956221c authored over 1 year ago
Apply suggestions from code review

Co-authored-by: Chris Bielow <[email protected]>

bbe2ae52ef74144961d71c190f2a12cd9e2728b5 authored over 1 year ago
Merge branch 'develop' into Feature/GenericFileLoad

0e6b275a82814f976f22b75b13ba1214ffbd6aa8 authored over 1 year ago
Merge remote-tracking branch 'upstream/develop' into Feature/GenericFileLoad

c374077f3f098fa2d2a1e9b5d555e8453497bb59 authored over 1 year ago
Merge branch 'develop' into restore_tutorials

02397a37ac18163e0f8bf79dd99e8678d13f072d authored over 1 year ago
Deisotope Fragment Tolerance Exception (#7101)

* added deisotoper tolerance exception

* moved tolerance exception before isopeaks (argument ...

19f33d5bedf25cde427e35d931806c8a5e03d749 authored over 1 year ago
add option to extract decoy features in FFID, filter by feature score in ProteomicsLFQ (#7103)

* add option to extract decoy features

* minor refactoring

* add SVM feature scoring

* ...

c2cf86b32c05dce46dbac9ae85c647f883f62359 authored over 1 year ago
Merge branch 'develop' into restore_tutorials

e22bc79bdf688823604ee027f6bc15d30b59224a authored over 1 year ago
renamed OpenMS_tutorial to developer_tutorial

6b3cc475b03818281f4e3a5db51f32027c396a42 authored over 1 year ago
SPDXify licenses, change alignment of tutorial on Doxygen

9a5986a438f17659f2d26ad37236424c77a570a3 authored over 1 year ago
Merge pull request #7108 from OpenMS/simde_0.7.7_20231002

Update SIMDe to 2023-10-02 snapshot of 0.7.7

f9307502f2b0b0cc66a5617d1d95a5f35d072d17 authored over 1 year ago
readded HTML tutorial parts

2d01bd9ac633351914c0761e7aabda36f60faf57 authored over 1 year ago
Update SIMDE to 2023-10-02 snapshot of 0.7.7

https://github.com/simd-everywhere/simde-no-tests/commit/64f94c681949ece73d1cda7f99b283cf2ee7489...

2c13492e50874c16687cf7c2c22fea305991e324 authored over 1 year ago
Merge pull request #7105 from OpenMS/jpfeuffer-patch-5

[FIX][SageAdapter] Use `restrict: null`

df07ac2220ede565d0ac79bc5c4b857344a822fd authored over 1 year ago
[FIX][SageAdapter] Use `restrict: null`

70f33c3fd47b034fa95824a1311d890c738a21cb authored over 1 year ago
SageAdapter option to keep json as debug output (#7102)

2eaf4de970ab33b970051356359ddb34bc62b46e authored over 1 year ago
Update SageAdapter.cpp (#7100)

de6682436952fbfa9c3fae613bbf23e91dabfa45 authored over 1 year ago
Merge pull request #7098 from OpenMS/jpfeuffer-patch-5

[FIX] DatabaseName element in MzIdentMLDOMHandler.cpp

f958a6bc954de76f373ea5bf659c04c11b0fce38 authored over 1 year ago
[FIX] DatabaseName element in MzIdentMLDOMHandler.cpp

df938b59eba2ece4f8c7c6379d5d063aa28803ed authored over 1 year ago
SageAdapter fixes (#7093)

* update sage adapter

- don't report hits outside of charge range
- prefix SAGE subscores

...

e10059756d609732acf34f869b97c43fa3393b99 authored over 1 year ago
[ProteomicsLFQ] Parameterize min. proportion for requant. (#7095)

* [ProteomicsLFQ] Parameterize min. proportion for requant.

* Update src/topp/ProteomicsLFQ.c...

acf8b460227636d5dde62f64627e506115449978 authored over 1 year ago