Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/OpenMS

The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS

catching ppms = 0

ee4dde358e876e0d1cdb03af2e884faef3bddd94 authored over 3 years ago by Tom Waschischeck <[email protected]>
Merge branch 'develop' into feature/FMEInterface

9ac4f7f3275e8383945e37d3716255734b55f40d authored over 3 years ago by Tom Waschischeck <[email protected]>
new lines at end of file

20008cc545f33df45ecc3be619daf962f736466c authored over 3 years ago by Tom Waschischeck <[email protected]>
remove seqan from contrib and place into main tree (#5214)

* remove seqan from contrib and place into main tree

* forgot one file

* remove hidden mac...

8be26bac2ffcbf0454cfe9c875e9b8feb6226a2e authored over 3 years ago by Timo Sachsenberg <[email protected]>
FLASHDeconv 2.0 beta release version. Parameter problem fixed

dcf86a47c182e4944b6bf912564d99e9e54bced7 authored over 3 years ago by kyowonjeong <[email protected]>
FLASHDeconv 2.0 beta release version. Parameter problem fixed

fc675f1d5b0ac1afc406575bf37b399cc6a0acac authored over 3 years ago by kyowonjeong <[email protected]>
update description of colicin_E5

301fa5a1d9171d9696e2bc3142b0b843bfc7f9cf authored over 3 years ago by Samuel Wein <[email protected]>
Merge branch 'RNA_enzymes' of ssh://github.com/poshul/OpenMS into RNA_enzymes

475989d3afa8d844d81881c46ce230a792df278c authored over 3 years ago by Samuel Wein <[email protected]>
[fix] fixed Colicin E5 specificity to match https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1635277/

d0836b433ea26d447e6030eb1db7d748d4448f3f authored over 3 years ago by Samuel Wein <[email protected]>
fixed QC test files

0f70d7c45c6e66b9e31a08cefe08864b12de8f61 authored over 3 years ago by Tom Waschischeck <[email protected]>
Merge pull request #5212 from oliveralka/fix/scan_number_handling

ADD: SpectrumLookup - MS_Agilent_MassHunter_nativeID_format

1e1ada2950496570f1491b2dde78f09d173f4615 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #5210 from OpenMS/doc/install_win

Update install-win.doxygen

1cec5cac2aaf35ff43240fd7f95b5bf3c617eeb2 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
PSMCorrectness docu

fb18872f4fcc07bc6dfe75059c20ae4506154b66 authored over 3 years ago by Tom Waschischeck <[email protected]>
FLASHDeconv 2.0 beta release version

d58cdf5088ff9e30ca693a0742ab1682bd16c138 authored over 3 years ago by kyowonjeong <[email protected]>
FLASHDeconv 2.0 beta release version

c43c06fd39f66a55a53bc685fe956fde8d4fafb8 authored over 3 years ago by kyowonjeong <[email protected]>
docu in FME test

b5bf423974bd4143bd7985056017329862ee0f4a authored over 3 years ago by Tom Waschischeck <[email protected]>
test for PSMCorrectness and additional catches

488469ca2a7309c66d94820e07b1bbf740aa2113 authored over 3 years ago by Tom Waschischeck <[email protected]>
Update install-win.doxygen

13de1fe8affec6741dfcb716487c21134b7556f8 authored over 3 years ago by Timo Sachsenberg <[email protected]>
ADD: MS_Agilent_MassHunter_nativeID_format

d748f79aa633439e120aa7fc03585f9b79d72a30 authored over 3 years ago by oliveralka <[email protected]>
Update install-win.doxygen

10be6244c245a55f35a635287f556dca8c75b172 authored over 3 years ago by Timo Sachsenberg <[email protected]>
use default move; try fix string operations

187671864a87284d3a3bd3847f968f1e940f4df5 authored over 3 years ago by oliveralka <[email protected]>
Update install-win.doxygen

36aec54ca71fea3b295cae31c86d81c607365782 authored over 3 years ago by Timo Sachsenberg <[email protected]>
Update install-win.doxygen

ab32f49f729ef0c267d1580b147a6e606e302bac authored over 3 years ago by Timo Sachsenberg <[email protected]>
add move constructor; fix cleanup FeatureMap; fix charge parsing PeptideRef inFFMID

9bbb414b0d5055a563bd76ad09e18e293b03e44e authored over 3 years ago by oliveralka <[email protected]>
FIX: MapAlignerIdentification

6c839ea6af0127c0927b63e03b610e676894687c authored over 3 years ago by oliveralka <[email protected]>
FIX: FeatureFinderIdentification

f4b306d4c91f93025e10b150963a27ab5445154d authored over 3 years ago by oliveralka <[email protected]>
Implementation of MSPGenericFile::store (#5206)

* Implementation of MSPGenericFile::store

* Added Python bindings

* fixed Redundant blank ...

f113da71517230f5a751c32bac6acb58b4187992 authored over 3 years ago by bertrandboudaud <[email protected]>
QScore has mass error feature..

15761dd785edf2f3bd0c32a162078c3ce2049ea9 authored over 3 years ago by kyowonjeong <[email protected]>
QScore has mass error feature..

7960d6913b841167b98e92ef705967311fd789b2 authored over 3 years ago by kyowonjeong <[email protected]>
FIX: IDMerger; IDFileConverter

942fe96d4509eee2dba8b3f7bd38f6c1855ca8fb authored over 3 years ago by oliveralka <[email protected]>
[feature] added more RNA digestion enzymes

dca042eb2fd6c9457c4ed838ccc0287b428787fd authored over 3 years ago by Samuel Wein <[email protected]>
QScore has mass error feature..

5ca54f199339e6787491b2819ecc3f1474494148 authored over 3 years ago by kyowonjeong <[email protected]>
[FIX] fix compile errors and warnings

d4c98736a9d75a77e7a9f88bfccb3132558963bf authored over 3 years ago by Hendrik Weisser <[email protected]>
[DOC] DefaultParamHandler: mention that 'defaultsToParam_()' calls 'updateMembers_()'

252d194e8bc1e18948da94a65be5d6c3ca3cfe6f authored over 3 years ago by Hendrik Weisser <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into idfile-integration

de477d9b46ee2270f252341d179670214efcc57c authored over 3 years ago by Hendrik Weisser <[email protected]>
Merge pull request #5199 from oliveralka/fix/AMS_mass_error

FIX: mass error calculation multiplier AMS

64c260cb84228ad14dfd30a842cd09854d7d6ef2 authored over 3 years ago by FabianAicheler <[email protected]>
Merge pull request #5203 from OpenMS/oliveralka-patch-1

pyopenms_dev_to_latest

67909b5efa4875efa86f99bba429538a2191bbc2 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
pyopenms_dev_to_latest

34feac65dab4f0ea9062ef84bf8633e9cc94268d authored over 3 years ago by Oliver Alka <[email protected]>
[feature] added more RNA digestion enzymes

20ee767bccc8ce74087a795e5f9b5dc5dc92a393 authored over 3 years ago by Samuel Wein <[email protected]>
change type to UInt

48ca2d3be77ed733a7466eea629f514bc01928e2 authored over 3 years ago by oliveralka <[email protected]>
FIX: Check mol_multiplier zero

fe675b32c9e3bb46fa0226f4070ec9d3b7608500 authored over 3 years ago by oliveralka <[email protected]>
FIX: mass error calcualtion multiplier AMS

e10e86f6bccb089bbe422885891d64b179ab1283 authored over 3 years ago by oliveralka <[email protected]>
fix minor warning

38285354b7ad9e08747ca6c9f92ef660c59245dd authored over 3 years ago by Timo Sachsenberg <[email protected]>
fix default operators (#5197)

d46c1a24fa9a86fd6f9505fba9049047bd290dbb authored over 3 years ago by Timo Sachsenberg <[email protected]>
fix

3a7f680bce4aa22fe27f976d26463041f894a8cb authored over 3 years ago by Timo Sachsenberg <[email protected]>
QScore has mass error feature..

cef0822f6c8cd2e3b7875be28ef3e98594b0a9ad authored over 3 years ago by kyowonjeong <[email protected]>
QScore has mass error feature..

bf1dfd60b6e081e22d190df3defd593c543acb01 authored over 3 years ago by kyowonjeong <[email protected]>
QScore has mass error feature..

b41bec806e727e5dae3f3e9047a840c443aa92af authored over 3 years ago by kyowonjeong <[email protected]>
more gcc 9 fixes (#5196)

c792811b710747a76ee3678d7a1e23fc85e8a313 authored over 3 years ago by Timo Sachsenberg <[email protected]>
FLASHDeconv ver 2.0 beta before test...

924262ea62e9ea6784ed00cfb0f9deb9ba9df4e3 authored over 3 years ago by kyowonjeong <[email protected]>
QC topp test outputs adapted

93836f33eb5e7008898ed248d8150c9be2656f9a authored over 3 years ago by Tom Waschischeck <[email protected]>
ToleranceUnit moved to QCBase, added PSMCorr to QC topp

caec5d33338b0d45137efabc9359c2d77822ed76 authored over 3 years ago by Tom Waschischeck <[email protected]>
new metric PSMCorrectness

fa34ecff80573d2f390e25e33403bfde44625730 authored over 3 years ago by Tom Waschischeck <[email protected]>
made getTheoSpec static member function of FME

db74f0aa18e6be8c38e943484406d78a97f147c4 authored over 3 years ago by Tom Waschischeck <[email protected]>
Merge pull request #5193 from OpenMS/oliveralka-patch-1

Revert changes due to cython 0.29.2

3eee4b79bf42aa618574aaa1caf19ec5c2a5a5df authored over 3 years ago by Julianus Pfeuffer <[email protected]>
Revert changes due to cython 0.29.2

Autowrap fix See uweschmitt/autowrap#99
Should work with python 3.6, cython 0.29.22 and autowra...

e26093fa6272044d4ae569100b76f0de1cc5760a authored over 3 years ago by Oliver Alka <[email protected]>
Compile error fixes OpenMS/OpenMS#5186 (#5187)

* Fixes OpenMS/OpenMS#5186

* some more fixes

* fix

* Fix Cython to last version before ...

c481073b25351a9c524ea7c605b136942e4b46d9 authored over 3 years ago by Timo Sachsenberg <[email protected]>
FLASHDeconv ver 2.0 beta before test...

82ea5acb62e5fdb74356bb70b5e0feb50d14ea2c authored over 3 years ago by kyowonjeong <[email protected]>
FLASHDeconv ver 2.0 beta before test...

c435f8fbd3257c1e0c549d464cc78718978d8b69 authored over 3 years ago by kyowonjeong <[email protected]>
Merge pull request #5190 from cbielow/mgf_spec_annotation

more robust SearchEngineBase

988b883dff70c58a3301ea7d31b2c5c4eae78af8 authored over 3 years ago by Chris Bielow <[email protected]>
CI fixes

cefab27fc867733a8f439deb2c302136c79552b3 authored over 3 years ago by bielow <[email protected]>
amend

c8eb488ca2bc989e1ed6f3422a184d072db36ff1 authored over 3 years ago by bielow <[email protected]>
make SearchEngineBase robust against empty MS2 spectra

5614a8854186522197fc501fe6e281e845193a53 authored over 3 years ago by bielow <[email protected]>
Merge branch 'develop' into feature/FMEInterface

26da52e07e2608de4c4957d75c8071069df2c54b authored over 3 years ago by Tom Waschischeck <[email protected]>
FLASHDeconv ver 2.0 beta -

42d33122af0d0380a43d70184becc4bdef05440b authored over 3 years ago by kyowonjeong <[email protected]>
FLASHDeconv ver 2.0 beta -

d82725b3296ef6d895b0a729cd23e17ae0e35aca authored over 3 years ago by kyowonjeong <[email protected]>
Merge pull request #5185 from Waschi97/develop

Updated Contrib Submodule Commit

25cd676614a44910ca06b91bdb2afd589f49409e authored over 3 years ago by Julianus Pfeuffer <[email protected]>
[FIX] FeatureFinderIdentification: fixed counting of internal/seed-based IDs (for summary statistics)

740c60daa0fa30e4825146df00c0f037f021987b authored over 3 years ago by Hendrik Weisser <[email protected]>
TOPPic output structure added

2cab324a139d6e449064a8669b8f5905222fb817 authored over 3 years ago by kyowonjeong <[email protected]>
updated contrib submodule commit

5bd5b571423f62152e1fda36b8354c15a28a84fb authored over 3 years ago by Tom Waschischeck <[email protected]>
Merge pull request #4922 from OpenMS/pyopenms3

Some tries to build pyopenms with language_level=3

492c5bd05923a68c2aa8d57ea8068977a912ba08 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
FLASHIdaBridgeFunctions.cpp modified so it outputs color, intensities.

7d3214e0ec7df56653c7e21278ecc849ac100090 authored over 3 years ago by kyowonjeong <[email protected]>
Update ADD_TO_ALL_OTHER.pyx

8e27d0b8d0f0a884863bfbc99a8c1bb600ea5382 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
Update setup.py

ab343f6c3e4aa79636529469173073c64dd5cb12 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
Remove include die from cython

6b167bf84272ad8c0a484829ca4cdabe9417cfee authored over 3 years ago by Julianus Pfeuffer <[email protected]>
Adapt include does?

99ff5123fc2158febb4adbed92270e0c1fc1b59a authored over 3 years ago by Julianus Pfeuffer <[email protected]>
Add new autowrap flag for relative imports

0263c574c84e6d3d6e78300006b03e216703fecd authored over 3 years ago by Julianus Pfeuffer <[email protected]>
FLASH Ida bug (overlapping nominal mass results in incorrect colors) fixed.. print out color requency..

85e763e57f1f8a3f4c1c26a4a8153cd0a3cdec4d authored over 3 years ago by kyowonjeong <[email protected]>
[FEATURE] converted FeatureFinderIdentification to use new IdentificationData members in Feature[Map] (work in progress)

37714c5855733ec539a686919b46eaf43a0c269d authored over 3 years ago by Hendrik Weisser <[email protected]>
[FEATURE] IdentificationData: improved 'RefTranslator' subclass

6f3bd83feb8eed783a52d50f271011bfb4db8b71 authored over 3 years ago by Hendrik Weisser <[email protected]>
docu & FME test

03a6798833cdd1b2e61ff3a1890e850f7b4c2710 authored over 3 years ago by Tom Waschischeck <[email protected]>
Merge pull request #5179 from cbielow/mgf_spec_annotation

NOVORAdapter fixes

c30f370bc5913a09765247682fec976147a5c3ec authored over 3 years ago by Chris Bielow <[email protected]>
update link to new macos contrib

85cf0791cc736691e1855e6392682807d168fd15 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
move avg calc, metavalue name in Constants, FMEStatistics renamed

9a9dfc6bda43c65632141a84ff0d3d80f1bddc3d authored over 3 years ago by Tom Waschischeck <[email protected]>
[FIX] NOVORAdapter: also write MS2 spectra even if their metadata type is not annotated

[FIX] NOVORAdapter: error if no MS2 spectra were passed to NOVOR
[FEATURE] NOVORAdapter: report M...

e0d1dd3f4cb6b12481091d0ee99cdc05823e5a33 authored over 3 years ago by bielow <[email protected]>
fix warning

8cb40db5acd4cbef7b2330efd41707e3c5591639 authored over 3 years ago by bielow <[email protected]>
fix NOVOR DOi

50c136c9556c3c6e66b280265e04bf30c65928f0 authored over 3 years ago by bielow <[email protected]>
Merge branch 'develop' into pyopenms3

dde4be2101ab8625a83d85ee01308ed3f30b882e authored over 3 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #5140 from jpfeuffer/fix/clangwarnings

[FEATURE] switch to C++17

77af895cca1dd05360f5ebe8aba4f36415a3f3a3 authored over 3 years ago by Chris Bielow <[email protected]>
Merge pull request #5053 from OpenMS/fix/paths_actions

[FIX] pyopenms_wheel actions - env_var changes

432e7c5b9062be698af354d281274f7c78ba191b authored over 3 years ago by Julianus Pfeuffer <[email protected]>
Create .clang-format (#5155)

a3f89c7a726fa5e5f83f73782bc14a52a3f25f3c authored over 3 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #5177 from cbielow/mgf_spec_annotation

[FIX] SearchEngineBase

882b3e1bccaf548280eeffb4e49fecd9af9e74d8 authored over 3 years ago by Chris Bielow <[email protected]>
[API] store references to matches (e.g. PSMs) instead of observations (e.g. spectra) in features

219a1bef9ea5b1be36197e28d6273ec2cc88f709 authored over 3 years ago by Hendrik Weisser <[email protected]>
Merge branch 'develop' into pyopenms3

07841159d447f94c9167364d323caacb088e8eb7 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
little fix

0f22f2d81b9e6b70bf0dc59abd25e61e0627fefd authored over 3 years ago by Julianus Pfeuffer <[email protected]>
add header

72dbc65ca62f9cc388333a95d4d6000fba6a2318 authored over 3 years ago by bielow <[email protected]>
[FIX] SearchEngineBase: inspect spectra's data if metainfo not available

[FIX] annotate MGF data as centroided

5a5bc8ab3e3048195df410e15694bd1a2c436ef0 authored over 3 years ago by bielow <[email protected]>
rm PATH reset

85b0e069184d0ac9706da4a1458bdf52a4c72aad authored over 3 years ago by oliveralka <[email protected]>
Merge pull request #5176 from cbielow/mgf_spec_annotation

[FIX] TOPPAS crash when double clicking disconnected output node

0510f1bd34fdc2c22018510b2d15d1430e656c05 authored over 3 years ago by Chris Bielow <[email protected]>
test reset path - works without reset paths

8e3bdcb95560bdfc3a367e3694937136ea2e42ac authored over 3 years ago by oliveralka <[email protected]>