Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/OpenMS

The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS

add move constructor and fix some warnings

ab2690a54a07d3d77bb1e58cb65fa400569416f6 authored over 3 years ago by Timo Sachsenberg <[email protected]>
FLASHIda global target

36bac56aed2ffbb724d624cc89a0a417c955e702 authored over 3 years ago by kyowonjeong <[email protected]>
docu

4fbc681962b55642a133c34f48c802cdb45de5d0 authored over 3 years ago by Tom Waschischeck <[email protected]>
FLASHIda global target

45b617e9efadfc0dac9b1960e1910570bff5f333 authored over 3 years ago by kyowonjeong <[email protected]>
FLASHIda global target

1162db9aff93fdcc256e4c2c67f73cdebfee463c authored over 3 years ago by kyowonjeong <[email protected]>
FLASHIda global target

1ab30bfd1c977b1ac74f2073f9799d6a4eaab3ce authored over 3 years ago by kyowonjeong <[email protected]>
FLASHIda global target

00a4316a2ff5c32e40a5d29e00a11938df369f8b authored over 3 years ago by kyowonjeong <[email protected]>
try windows syntax

543b263abe9a1c337ed9a680a28f9824db490ed5 authored over 3 years ago by Leon Bichmann <[email protected]>
cmake path

b042ac933c6ece3319dd4e875f94761e40a8ab93 authored over 3 years ago by Leon Bichmann <[email protected]>
use chocolotey to set cmake 3.18

8182685db327d49858bf444f6c973c7b840604a0 authored over 3 years ago by Leon Bichmann <[email protected]>
try cmake swiss army knife gh-action

69b5fb3c9fbb9ee50a8a0b3db65dc390cbcdf748 authored over 3 years ago by Leon Bichmann <[email protected]>
address issues pointed out by reviewers

fd39e7432393c031467770a78e4571538944ab2f authored over 3 years ago by axelwalter <[email protected]>
allow consensusXML with all psms and doc fixes

72f14a30b0fbea87f8eb6c9e7b6868424326b6c2 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
try to fix gitpod caching

e1146d4f20c09238791a9d2cc7a9e72c21529db4 authored over 3 years ago by jpfeuffer <[email protected]>
Update settings.json

5a3ec8d55d8481983a4d4121bb7c52bb27d26224 authored over 3 years ago by Timo Sachsenberg <[email protected]>
Update settings.json

3cb7d9ddaaa44ba80ab6a8f71d1fa46d6746f1f8 authored over 3 years ago by Timo Sachsenberg <[email protected]>
merge gitpod changes

783b9b2f9290a808dde577229dce62bad350e0ae authored over 3 years ago by jpfeuffer <[email protected]>
gitpod fixes to skip rebuild

2c3b9dfff5f97745f948bbb051a1cebde93dc7c6 authored over 3 years ago by jpfeuffer <[email protected]>
[fix] Implemented multi-site searching for RNAses using vectors of regexes

391cc829dc783019f6824b1edc5a7306c028aea1 authored over 3 years ago by Samuel Wein <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into develop

3d55aa05fb321712edbeddac152751470659f142 authored over 3 years ago by Timo Sachsenberg <[email protected]>
attempt to fix gitpod delete of build folder

36f7e6c0bd9d2dc3e97f85be31aebd9deb031460 authored over 3 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into develop

9d8b27685817af4d34880108f14ec085f2525a4e authored over 3 years ago by jpfeuffer <[email protected]>
remove kit compilers to force re-use of CMakeCache

bbea675c973c2d04e74fa0f0835b01f25ab87448 authored over 3 years ago by jpfeuffer <[email protected]>
Merge pull request #5235 from OpenMS/jpfeuffer-patch-1

Add some other redist finding methods and arbitrarily use first redist in case multiple are found

272177777bbf9e00b2c45646730287c57fe54600 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
tested changes

ceb2d5c60155f69e85ecc9819aa41f883fda6174 authored over 3 years ago by jpfeuffer <[email protected]>
[FEATURE] Add OpenMSDatabasesInfo Util to list supported Enzymes and Mods in tsv.

bcafbb1fdc952f36820b7a7d079cc85f49fb10d2 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
double slash

fd5a89e6761368e270bdb0df4dfe0b7abb502934 authored over 3 years ago by Leon Bichmann <[email protected]>
dash

bd7805086f51583375242e2ef917e79e6717b321 authored over 3 years ago by Leon Bichmann <[email protected]>
CL_MPCount

3fc3ae7da2a9509f258ecbcbc54f92de7f9e309f authored over 3 years ago by Leon Bichmann <[email protected]>
add variance storage to docu

4709602cc821a922c0b5c82453a5518954b36057 authored over 3 years ago by Tom Waschischeck <[email protected]>
update nlohmann/json and add mzQC basic scaffold

3ab967ea06ba50391567299bdb24358ce6544682 authored over 3 years ago by axelwalter <[email protected]>
[REFACTOR] separate mzQC and qcML algorithm files, both usable by QCCalculator

f44a523e796ff4a49bbacd5987710bd70ae8a442 authored over 3 years ago by axelwalter <[email protected]>
add mzQC to FileTypes

6e1b163faa26b52917d519d0fd21db2e25eece1b authored over 3 years ago by axelwalter <[email protected]>
add basic QC metrics

3fa4a490fd582d1f69ac2bf5ea7f7f556488d63b authored over 3 years ago by axelwalter <[email protected]>
Revert "added mzQC export for the QCCalculator"

This reverts commit d834313d204f510362300eff543dc9d48ae167fb.

84d06d9234e99f2424745207af40c9009ac8c028 authored over 3 years ago by axelwalter <[email protected]>
add files for independend QC Calcualtor with mzQC output

copied QcMLFile.cpp to MzQCFile.cpp
copied QcMLFile.h to MzQCFile.h
copied QCCalculator.cpp to M...

84ab8b80454fcddaa49467b9fb0f920565b8a0e4 authored over 3 years ago by axelwalter <[email protected]>
added mzQC export for the QCCalculator

28d0800f3a0d607c634e20dcde542d0455bc7d2a authored over 3 years ago by axelwalter <[email protected]>
add branch to actions ci

2ec86a6f36067d5897987dda968d32ce76a436ed authored over 3 years ago by Leon Bichmann <[email protected]>
reset to build flag param

8884c7a28a1cd6ba714faca11aa7515532a5d52e authored over 3 years ago by Leon Bichmann <[email protected]>
change pr name

b80d822e72f73d106d9b7f78256c22558858db59 authored over 3 years ago by Leon Bichmann <[email protected]>
boost debug off

cc16e15e126b91cf8fe7d3d8ba99693623f5442e authored over 3 years ago by Leon Bichmann <[email protected]>
reamde

82d9d1266c474d0e2c6cd85b6575f39dcb686252 authored over 3 years ago by oliveralka <[email protected]>
Merge remote-tracking branch 'origin/feature/FLASHDeconv' into feature/FLASHDeconv

5f68be2e0b268024decb14b279f8cd42e8766d87 authored over 3 years ago by kyowonjeong <[email protected]>
FLASHDeconv 2.0 beta release version. Parameter problem fixed

d286f66a56e1867175cc426c46726d16abc0f077 authored over 3 years ago by kyowonjeong <[email protected]>
[FEATURE] Add OpenMSDatabasesInfo Util to list supported Enzymes and Mods in tsv.

3fc3f1f67ba8b561849ab4502eb233e114dc2142 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
Fix and make safer?

f294ace41c8134983dab2fb5dc2cbf620ab374b0 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
forgot commit CMakelists

9781c4f28c45cf9e48f2423a129172c82d4a4ee8 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
[FEATURE] Allow exporting all PSMs to mzTab (ID-only for now)

9d57cbd00606f8db4f1d1c45fa40979fe3710f33 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
add check

126f744327ac5ef8bdae1dc26ed706ebd1b2fe43 authored over 3 years ago by oliveralka <[email protected]>
check if existing

5215d0d14544e273897d10c5f1410a99b30c940b authored over 3 years ago by oliveralka <[email protected]>
Additional fixes NSIS

be2debd4c78894d842f066dd23b1800953214bec authored over 3 years ago by oliveralka <[email protected]>
greater

6ff165d6d2e02c77c4f5684b235c72e5bebbbe70 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
Add some other redist finding methods and arbitrarily use first redist in case multiple are found

4279065b9188a52a8df141f926fc14a6bd415fc4 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
Add fixed testfiles PLFQ3

d398538e0ef43e3ce8bf0572f5a8cc830d0548b4 authored over 3 years ago by oliveralka <[email protected]>
set setLoadedFilePath as fix for PLFQ_3

8a9a993e6b6a86d23c10ec3c81403a62f3877325 authored over 3 years ago by oliveralka <[email protected]>
changes testfiles proteomcisLFQ

0591cbc63145d43099c3102d3f82437f5f42eb17 authored over 3 years ago by oliveralka <[email protected]>
Comment: 'dummy' peptideidentification

c91a5cb1f2c2fa11752ad486a0a561a0645bbadd authored over 3 years ago by oliveralka <[email protected]>
Merge pull request #5233 from OpenMS/jpfeuffer-patch-1

[FIX] remove potential source for multiple def. error

c417f3e4c305fdadcf46dc9185d9dc7c7973d1b8 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
[FIX] remove potential source for multiple def. error

5bb9782b846abf168be77cec7f02c44718698317 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #5227 from oliveralka/fix/sirius_jenkins

Test: Sirius Tests Jenkins

3bcd22517b2fa5512e9f64384084256b2e2b45fc authored over 3 years ago by Julianus Pfeuffer <[email protected]>
bug fixing on handling file path with white spaces

f04482102b1c987bced1f40164b6cac1f662a1f7 authored over 3 years ago by JeeK <[email protected]>
Update THIRDPARTY master; Whitelist sirius test 9,10 '522.38'

c6d2cbb03bb1b6b69d3e6a783b36374d70f5245b authored over 3 years ago by oliveralka <[email protected]>
adding FLASHDeconvScript

bcd9ff978053c76fbcd6b654275a6ba3a5e57a71 authored over 3 years ago by JeeK <[email protected]>
bug fixing on moving FLASHDeconv from utils to tools in ToolHandler

0cd84336f56735098a1548d32d45dda8e7d82a87 authored over 3 years ago by JeeK <[email protected]>
Additional fix macOS script

a57fd9efb5eda5bfa5a73dac9c9099c87967763f authored over 3 years ago by oliveralka <[email protected]>
Update PSI-MS ontology (#5211)

* Add files via upload

* Update psi-ms.obo

* fixed some mzML tests

* fixed some mzML te...

3b29bfcefdbf51047776ade4a6cadfcaea1be893 authored over 3 years ago by Timo Sachsenberg <[email protected]>
add THIRDPARTY branch with fixed start scripts

3a2ad7edec0d64370553a87833a113a1e04b955f authored over 3 years ago by oliveralka <[email protected]>
remove unnecessary files

3ac40ffc1af454f31fb538e357e77419f4d72eee authored over 3 years ago by JeeK <[email protected]>
Merge branch 'develop' into feature/FLASHDeconv

f1e5468bb5903b8e67a0892260a19274c8588560 authored over 3 years ago by JeeK <[email protected]>
FLASHDeconv 2.0 beta release version. Parameter problem fixed

0783a186461c5c575e98ccdb29f7d3ddcfd8b2e8 authored over 3 years ago by kyowonjeong <[email protected]>
revert sirius_binray; use THIRDPARTY fix sirius moved from bin dir

e544af336209fc72b45fb16a3bbdf48b3fd89b05 authored over 3 years ago by oliveralka <[email protected]>
split SIRIUS FINDBINARY statements

a0e9be559ef6a1f89bd11f9281ba42ab15473b0b authored over 3 years ago by oliveralka <[email protected]>
[nop] fixed whitespace

453f9db4ca6e3a4782a831f7bb999aa27cbc1e30 authored over 3 years ago by Samuel Wein <[email protected]>
[feature] enable multi nucleotide specificity in RNases. Multiple successive nucleotides must be separated by , in the CutsAfter and CutsBefore regexes (see mazF as an example)

a1476751a38abf6d1c344cb36a04f665f486bbbe authored over 3 years ago by Samuel Wein <[email protected]>
test jenkins

c0b398da34ec8704f2f20201d19286c2b8b71daa authored over 3 years ago by oliveralka <[email protected]>
QC test files updated

5a36631534d7206bd895c2b0e6272de842cc793a authored over 3 years ago by Tom Waschischeck <[email protected]>
metavalue name for PSMExplainedIonCurrent in Constants::UserParam

e3193cf5a2a22ba8e508ff6882d1bfe222732532 authored over 3 years ago by Tom Waschischeck <[email protected]>
moved getTheoSpectrum to TSG::generateSpectrum

1e96bc1b08d58df904d1d2e528b109553a381db2 authored over 3 years ago by Tom Waschischeck <[email protected]>
fix bug in BPIA and add tie resolution (#5204)

* fix bug in BPIA and add tie resolution

* proper tie resolution for all hits

* add conven...

5cacd520a6e6eb3cf510c63adc53a8b63230473e authored over 3 years ago by Timo Sachsenberg <[email protected]>
Refactoring and Integration of SIRIUS 4.6.0 (#4725)

* [REFACTOR] SiriusAdapter: First adaption to new SIRIUS version

* [ADD] Additional parameter...

664f8361a70948b67caa646d09420bb0c6e58fd9 authored over 3 years ago by Oliver Alka <[email protected]>
no variance for vectors of size < 2

5bf89eafe49b7ec9f193c18a5115b9df84338051 authored over 3 years ago by Tom Waschischeck <[email protected]>
Ci/GitHub actions for OpenMS builds without python and pyopenms (#5174)

* initialize openms yml

* delete pyopenms and python parts from ci yml

* underscore

* r...

0113f970a975c66b2c109021fd40c07e0c06bed6 authored over 3 years ago by Leon-Bichmann <[email protected]>
catching error for peptide hit variance & update QC test files

299e6283ede737b67d6e5f371198dcb536f348a6 authored over 3 years ago by Tom Waschischeck <[email protected]>
DBSuit topp to original state

93e2e72a0f30b65d713a1caf7f2dab1a7e3c1c81 authored over 3 years ago by Tom Waschischeck <[email protected]>
rename PSMCorrectness -> PSMExplainedIonCurrent

a25d79010618a981d0c1e35bc20e26d2ead7cec0 authored over 3 years ago by Tom Waschischeck <[email protected]>
FLASHDeconv 2.0 beta release version. Parameter problem fixed

cc63a8144385d66d5c0f17fffe48c47dec7dd44b authored over 3 years ago by kyowonjeong <[email protected]>
whoops, undoing change from a wrong branch

42a37f2ea6b22e5bf3fcc78aa59d01238a922e17 authored over 3 years ago by Tom Waschischeck <[email protected]>
variance for each peptide hit as meta value

463ee24e69e4e6fa64d06eacd165eab0cbf67498 authored over 3 years ago by Tom Waschischeck <[email protected]>
docu

121db7b9fc55ff996a5202aad0f3de0debcc6593 authored over 3 years ago by Tom Waschischeck <[email protected]>
FLASHDeconv 2.0 beta release version. Parameter problem fixed

847bb13e6d9a2369e75862bb76e9634766933d6d authored over 3 years ago by kyowonjeong <[email protected]>
PSMCorrectness in DBSuit

7052b803d8617cd2c456a518483ae399bb17fce4 authored over 3 years ago by Tom Waschischeck <[email protected]>
fixed variance calculation

8d70988828aa6ef1c763bb75f62579b280739501 authored over 3 years ago by Tom Waschischeck <[email protected]>
Merge branch 'feature/FMEInterface' of https://github.com/Waschi97/OpenMS into feature/FMEInterface

fa5f0e4eb0e4d6dd5398336ba2b54b83d65600b8 authored over 3 years ago by Tom Waschischeck <[email protected]>
updated contrib, merged develop

23e518379b576b1779b0aee8cca404635049f8cc authored over 3 years ago by Tom Waschischeck <[email protected]>
docu & FME test

b762240a9cc64395c7151cad7fda2705c579a64e authored over 3 years ago by Tom Waschischeck <[email protected]>
move avg calc, metavalue name in Constants, FMEStatistics renamed

ea7671c27921cbea93658425e337a56803794372 authored over 3 years ago by Tom Waschischeck <[email protected]>
forward declaring

4376a2ae6d8ff3a88160071afae2aaa77ec6779a authored over 3 years ago by Tom Waschischeck <[email protected]>
second compute for vector<PepID> input

96b3c353a055db377620b9c29d91d9d91c673f4b authored over 3 years ago by Tom Waschischeck <[email protected]>
docu

5e4b4e429acd50698d0f6d1af587eeffdcc663f2 authored over 3 years ago by Tom Waschischeck <[email protected]>
testing second compute function

2da83b19bca90f4420891a36a75ec622d4962c54 authored over 3 years ago by Tom Waschischeck <[email protected]>