Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/OpenMS

The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS

add a TIMS TOF ion mobility example file

bbfbbbc792b3a5839b67ec7e635ac1a6a7c63a6c authored over 3 years ago by bielow <[email protected]>
convenient determination of output file type in TOPP tools

024f95ea837764606add84be8d9d71f92081179c authored over 3 years ago by bielow <[email protected]>
enable check (works in VS2019)

bf4575cb7843e166851b455dfd80eb5dfd237570 authored over 3 years ago by bielow <[email protected]>
ProgressLogger for FASTA file reading/writing

1b97a0458f8f0c05e5c2604c747dca0f09454817 authored over 3 years ago by bielow <[email protected]>
FLASHIda paper version..

3f818a091e7615d42ce2015a1ebc3dc7ae7b8805 authored over 3 years ago by kyowonjeong <[email protected]>
FLASHIda paper version..

88bb979f01e08d224d32c9ea8a2ece1ef26b2e0a authored over 3 years ago by kyowonjeong <[email protected]>
FLASHIda paper version..

55f8e61e0cb9154c7f36d90fee770bc8bdb80ccc authored over 3 years ago by kyowonjeong <[email protected]>
more docs

03e003f537c93c22acbe1900762ebc36bb6958e1 authored over 3 years ago by bielow <[email protected]>
remove debug output

1f014801d1612fb83628beac73d43f62592bdc9a authored over 3 years ago by bielow <[email protected]>
fix doc

90949f21eed78c1cc0d99b0991ce6b6f4643a35e authored over 3 years ago by bielow <[email protected]>
minor formatting

e0c5a7313af7330bb406507ce176eb76072721bc authored over 3 years ago by bielow <[email protected]>
FLASHIda paper version..

259cd04c15eb4aebf39a5d9079d34e180e6b7331 authored over 3 years ago by kyowonjeong <[email protected]>
FLASHIda paper version..

0300939183e57565b21a83ba74650ca0deb705a0 authored over 3 years ago by kyowonjeong <[email protected]>
FLASHIda paper version..

c1650052b7dc6aaaa8dcd0cf7ae758c7b4f1f9af authored over 3 years ago by kyowonjeong <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into idfile-integration

65cd1e6d517b5168a5b8940d61032b9524373ac5 authored over 3 years ago by Hendrik Weisser <[email protected]>
FLASHIda paper version..

a1abf349356bf95f75b4db2ef3cbfa800874c54d authored over 3 years ago by kyowonjeong <[email protected]>
FLASHIda paper version..

c1b2876b635d4c712ac4eab324d1a9734a90be7c authored over 3 years ago by kyowonjeong <[email protected]>
FLASHIda paper version..

78419d0d0803114d2601024f22e25eb44341d105 authored over 3 years ago by kyowonjeong <[email protected]>
FLASHIda paper version..

2eccdc775161c0cc2f0e4144466d7606c937f9bc authored over 3 years ago by kyowonjeong <[email protected]>
FLASHIda paper version..

83c753843284993ca610d5376481a2dd7b1be7ec authored over 3 years ago by kyowonjeong <[email protected]>
FLASHIda paper version..

848ddbb6db15c7b64767fc87a3e6275ccf54c506 authored over 3 years ago by kyowonjeong <[email protected]>
FLASHIda paper version..

bb95e9118f7ad5983b5730fc67dd572d1832a525 authored over 3 years ago by kyowonjeong <[email protected]>
FLASHIda paper version..

996081579864e390fa779fcba0302911350253fa authored over 3 years ago by kyowonjeong <[email protected]>
FLASHIda paper version..

1e6fd07e59b00fda2d4696ba2f38cd455b77e1d6 authored over 3 years ago by kyowonjeong <[email protected]>
FLASHIda paper version..

aa725cb19ef3afce492ec3ab9f96cf55ed7edd40 authored over 3 years ago by kyowonjeong <[email protected]>
FLASHIda paper version..

f60d1a5e81983910a20546401105df1119751987 authored over 3 years ago by kyowonjeong <[email protected]>
add to changelog

78d473fc9b3ad945320e7544328a8ddec3f6910b authored over 3 years ago by Timo Sachsenberg <[email protected]>
forgot one file

59fb1db4aa730fea55cd4f4e7192737ef6071691 authored over 3 years ago by Timo Sachsenberg <[email protected]>
remove inspect adapter

44f7bcf3eb3d05b481cb9bfd7c7233195af4875d authored over 3 years ago by Timo Sachsenberg <[email protected]>
FLASHIda paper version..

b760605a147e40b2fcff6dd36cb755f51bbdb84c authored over 3 years ago by kyowonjeong <[email protected]>
FLASHIda paper version..

9b5d21294ebb725e1110b963343ee667cef4e0b9 authored over 3 years ago by kyowonjeong <[email protected]>
FLASHIda paper version..

68c373f09914723a37259fa5dfbde7b062b56963 authored over 3 years ago by kyowonjeong <[email protected]>
merge

cb52f986ffc34ea6dc6f1ac13989cab3726b3002 authored over 3 years ago by Timo Sachsenberg <[email protected]>
merge

005f9514edfd12b5c28ebcaf61a0273e7730305f authored over 3 years ago by Timo Sachsenberg <[email protected]>
FLASHIda paper version..

66b5d9d4e19c4f332b5240f776ad97064c5b6381 authored over 3 years ago by kyowonjeong <[email protected]>
FLASHIda paper version..

9c3e43ef87ec77be56bf88a4cdbf29eea5bd15db authored over 3 years ago by kyowonjeong <[email protected]>
FLASHIda paper version..

4e991f91e21393d74ee76398839209809f329509 authored over 3 years ago by kyowonjeong <[email protected]>
restructure code and update test

814a166911d0ef8657304330735cad7bb8ec2835 authored over 3 years ago by axelwalter <[email protected]>
Update MzQCFile.cpp

f3e28f622e2b53651b845de43a7663d24aaf5db6 authored over 3 years ago by Timo Sachsenberg <[email protected]>
FLASHIda paper version..

f4fbdcf37d6d71631357eddffda727c055579329 authored over 3 years ago by kyowonjeong <[email protected]>
Update MSPFile.cpp

1aa60b854cf4d75b6ea74e9c8ee85eb4234f0bc8 authored over 3 years ago by Timo Sachsenberg <[email protected]>
Feature/mzqc export (#5241)

* added mzQC export for the QCCalculator

* Revert "added mzQC export for the QCCalculator"

...

2428327d173bf8b282c4c85a9597ebcbd1535275 authored over 3 years ago by axelwalter <[email protected]>
mzQC file validates now

bceda476f790369a6353419a441cfe0fd8653fe7 authored over 3 years ago by axelwalter <[email protected]>
[FIX] reading NIST peptide spectral library MSP files (#5266)

* [FIX] reading NIST peptide spectral library MSP files

* review comments

* comment

* a...

8ba3a7a43e73df5d45f297b29465bd87e4eee409 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
[DOC] description on how to build a windows installer (#5267)

* fix NSIS EnvVarUpdate script when using nsis-3.06.1 giving

Error: unterminated string parsi...

c6681ffdd82da9074a0fdbc374f70b227674bec1 authored over 3 years ago by Chris Bielow <[email protected]>
FLASHIda paper version..

cd1aad248bf6842b0eed119689b24041197e4efc authored over 3 years ago by kyowonjeong <[email protected]>
FLASHIda paper version..

69f555102998735046e9f860200096d5d2abdc58 authored over 3 years ago by kyowonjeong <[email protected]>
Update std_functional_replacement.h

826c1e8da0b0a5a8f34958bd5409750b1a0d99ab authored over 3 years ago by Julianus Pfeuffer <[email protected]>
fix review comments

9c49fa0b98159e08e9eaf676ad75cc438aa17300 authored over 3 years ago by axelwalter <[email protected]>
remove boost testinf from DiaHelpers_test.cpp (#5270)

e5e9ff4087a6f033d51f899e6f052f9a1628dcd8 authored over 3 years ago by Timo Sachsenberg <[email protected]>
FLASHIda paper version..

477e304c05929a90ccca3d4ec00280a03d6231f1 authored over 3 years ago by kyowonjeong <[email protected]>
log file MS1 scannumber matching corrected

ee45dc2699ee621439697a8d1570d9bb508d2a53 authored over 3 years ago by kyowonjeong <[email protected]>
Merge remote-tracking branch 'upstream/develop' into develop

696184f25bfb808a7db6c4d07eb26e433ea974f3 authored over 3 years ago by oliveralka <[email protected]>
Major bug (FLASHIda precursor mismatch) fixed

1479605d70af4c852c5f566f5a8a82d352edf415 authored over 3 years ago by kyowonjeong <[email protected]>
OpenMSDBInfo also write unimod accession (#5272)

* also write unimod accession

* Update ModificationsDB.cpp

6f0bc52f8ef4b3abdff4bca9403d0448f2ad4699 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
Update InternalCalibration_Models.R (#5273)

d195d73573b1908bf55da05a853a0fa76bc23e95 authored over 3 years ago by Chris Bielow <[email protected]>
[Feature] Id mapping on open of idXML (#5259)

* add id mapping on opening of idXML files with an associated mzML

* linting and style

* r...

f373c6be4aad8b7b0dce59ec1b6ff9fc0c9c1d6c authored over 3 years ago by RobertDeibel <[email protected]>
fix submodules

9853ad63fca3c16ae5d8b5b005739b7fb64b8481 authored over 3 years ago by bielow <[email protected]>
Win installer script fix

51b2f9626cbf19dd921b336cda10732f126914df authored over 3 years ago by bielow <[email protected]>
cleanup VS redist finding routine

693344141be24d232421cdb5df6b6e30df6ece7a authored over 3 years ago by bielow <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into installer_fix

# Conflicts:
# cmake/package_nsis.cmake
# doc/doxygen/install/install-win.doxygen

3a91b490f5fbd595a2315480c1b2ce10a1c06122 authored over 3 years ago by bielow <[email protected]>
prelim installer instructions

592103f5ee57e915066f75c0d55ada3351503513 authored over 3 years ago by bielow <[email protected]>
for minor formatting

739231114c768cd53d079fd4f94bf9264b8097f6 authored over 3 years ago by bielow <[email protected]>
switch to https

1ce87a43b77f9811000cad9a463a624e9430063b authored over 3 years ago by bielow <[email protected]>
fix package error for NSIS when multiple redist exe's are found in the VS installation dir

327dfa7f9c14b5e52ba6005cdac526e7bcdffadf authored over 3 years ago by bielow <[email protected]>
fix NSIS EnvVarUpdate script when using nsis-3.06.1 giving

Error: unterminated string parsing line at macro:_IncludeStrFunction1:7

Error in macro _Include...

3b718ad4393c3205fa27cbd319999828a6ae8320 authored over 3 years ago by bielow <[email protected]>
coloring scheme discarded, cosine ignore zero implemented,

FLASHIda pass all features to C#

c9031abda6b649a6ed54e826fb6d207be9704cb2 authored over 3 years ago by kyowonjeong <[email protected]>
coloring scheme discarded, cosine ignore zero implemented,

FLASHIda pass all features to C#

4236ebd79815b02b8551e942940164c87e51ffc6 authored over 3 years ago by kyowonjeong <[email protected]>
coloring scheme discarded, cosine ignore zero implemented,

FLASHIda pass all features to C#

8a0f3fe29f32f268e28a72909b2f87f88225e2f8 authored over 3 years ago by kyowonjeong <[email protected]>
coloring scheme discarded, cosine ignore zero implemented,

FLASHIda pass all features to C#

99a599b48f46728c7dff37e22e81f9a21717b233 authored over 3 years ago by kyowonjeong <[email protected]>
Update src/openms/source/FORMAT/QcMLFile.cpp

Co-authored-by: Timo Sachsenberg <[email protected]>

4f75e26d27c9776610f14e79739b2208d91de999 authored over 3 years ago by axelwalter <[email protected]>
remove redundant blank lines

b394556c67a2e855bb446191f9deabf9dc79db18 authored over 3 years ago by axelwalter <[email protected]>
fix division by zero in calculateSNmedian

c99c02f1f05aaff0754d6e794e03d1f9aed201db authored over 3 years ago by axelwalter <[email protected]>
add test PLFQ3 test output

91057ea3288a55eaa64da37ef48c96f5687f8bc3 authored over 3 years ago by oliveralka <[email protected]>
Merge remote-tracking branch 'remotes/hendrik/idfile-integration' into fix/hendrik_idfile_integration

c5e83b0fc369ac9739b7460831c8b24e394ebbeb authored over 3 years ago by oliveralka <[email protected]>
Merge pull request #5264 from OpenMS/jpfeuffer-patch-1

[FEATURE] allow auto-deduction of special rules in PepIdx for ConsID

425df864770f02b597f6f2ca366c5cb3f20f0e65 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #5261 from cbielow/fix_install_doc_linux

[DOC] fixed min. required gcc version

e5c93297cba4ef0615bb5628e827f677eb298818 authored over 3 years ago by Chris Bielow <[email protected]>
Forgot negating after change

e83d1521889fd768bcc20fb8a7dba606962b457d authored over 3 years ago by Julianus Pfeuffer <[email protected]>
[FEATURE] allow auto-deduction of special rules in PepIdx for ConsID

a10595fda6a45feaacd4cb2c295752cbd05a164d authored over 3 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #5263 from OpenMS/filemerger_docu

[DOC] Extend description in FileMerger

d9692da0d410c06b6cdc960f608a5c962360d09c authored over 3 years ago by Chris Bielow <[email protected]>
Update FileMerger.cpp

88af8c99693b370a1e2669705657f4ddde29f9f1 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
Update src/topp/FileMerger.cpp

Co-authored-by: Chris Bielow <[email protected]>

f2ef5010a2428b0c00f9ef7e70dacd3cff2598e6 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
Extend description in FileMerger

14beac4b680250f7ebb5d753771190ba0042d62c authored over 3 years ago by Julianus Pfeuffer <[email protected]>
toppic feature output ms2 as well

ff7a2d534827af1d66fd93343fe0962a6f4d5e52 authored over 3 years ago by kyowonjeong <[email protected]>
toppic feature output ms2 as well

b8bc741c3a095ea874e7c3f7a995c5bb5845667d authored over 3 years ago by kyowonjeong <[email protected]>
toppic feature output

7513912b1cac67e4aad52c5c6f843d1d1ef56c70 authored over 3 years ago by kyowonjeong <[email protected]>
added myself as author

b12f802f07dbb899c49c0ff9f88223b6fe6f00cd authored over 3 years ago by kasrat93 <[email protected]>
added myself as author

b93b2648683d261457571f7ff41fe2917132b412 authored over 3 years ago by kasrat93 <[email protected]>
[FIX,TEST] fixed behaviour of 'IdentificationData::getBestMatchPerObservation' for single matches; extended test

62793817b1b220f990887d94c1d9cac28104b481 authored over 3 years ago by Hendrik Weisser <[email protected]>
[FIX] removed outdated code in 'FeatureFinderIdentificationAlgorithm'

82c74e222953662d4de48a99dcdf4eeb08763326 authored over 3 years ago by Hendrik Weisser <[email protected]>
[FIX] properly clear original ID references in 'IdentificationDataConverter::exportFeatureIDs'

a9d853124f50a75d1d509cbb2326cea95659af57 authored over 3 years ago by Hendrik Weisser <[email protected]>
[DOC] changed to C++17

f1b1aa785220df3d9d2d389d48cb59c6193bdd4e authored over 3 years ago by bielow <[email protected]>
[DOC] fixed min. required gcc version

3ede29c21898721d1de4c1a4f35285a67b174cb4 authored over 3 years ago by bielow <[email protected]>
mass global target rt added

37849cbc191cccc324692b2cfb49de7ae1291626 authored over 3 years ago by kyowonjeong <[email protected]>
[fix/aut894] - Updating metaValue PeptideRef (#5192)

* [API] - Updating metaValue peptideRef to PeptideRef to conform with naming convention

* [TE...

cf7d5573b0557cf9113516786a0f03c44d12ea73 authored over 3 years ago by Ahmed Khalil <[email protected]>
FIX: Python Bindings SiriusAdapter (#5251)

* Update THIRDPARTY

* first changes pyopenms

* additional changes

* add all; pyx

* t...

4fdb0b53f2496045efd040cee539a91289fa0cf7 authored over 3 years ago by Oliver Alka <[email protected]>
[fix] update mazf description

2379f91c35153f2dc60f1e22aea59f69d8f025de authored over 3 years ago by Samuel Wein <[email protected]>
[fix] fixed enzyme specificity for mazf and updated tests to check.

33915b8dfca520ec2cbc3df3c9d500619b91f7d7 authored over 3 years ago by Samuel Wein <[email protected]>
Merge remote-tracking branch 'upstream/feature/mzqc_export' into feature/mzqc_export

merge online changes from accepted suggestions

a117d47a1e30c030aced200162a022ac0d6dcd54 authored over 3 years ago by axelwalter <[email protected]>
update QCCalculator test for TIC metrics

10667f5155b9ad8783b10a601276ac353af51a39 authored over 3 years ago by axelwalter <[email protected]>