github.com/OpenMS/OpenMS commits | Ecosyste.ms: OpenCollective

pyopenms set c++17

c2baad260cd781590e0e20a1d69264836721778f authored over 3 years ago by oliveralka <[email protected]>

Merge branch 'develop' into RNA_enzymes

25be7812dbf85962da8328046767746c8d51f32d authored over 3 years ago by Timo Sachsenberg <[email protected]>

Fixed error of potential contaminant

82be1f3fdc895e0194560a78bc4f34273ed5386d authored over 3 years ago by valentin-noske <[email protected]>

fix readlink implementation

f10cda837b2d75eb94e6f9bfba484a756c98d18b authored over 3 years ago by Timo Sachsenberg <[email protected]>

exporter fertig

fcbe9475c9de68b300d57ed3839dd3c7e923b3b0 authored over 3 years ago by Vincent Musch <[email protected]>

check cmake version

c3c76d828813db0073e464b7a3a74b52a5c0a338 authored over 3 years ago by Oliver Alka <[email protected]>

Merge branch 'maxQuant' of https://github.com/vmusch/OpenMS into maxQuant

6df871bbf31000d80fc1bcc4a43f81d6c3b7876c authored over 3 years ago by Vincent Musch <[email protected]>

merge

2b32fcc802db453dc508a7625291354e33142924 authored over 3 years ago by Vincent Musch <[email protected]>

PeptideIdentifications are sorted in QualityControl

078e6572d2b0afe3f8d1e1c7adc4e4c21dae3abe authored over 3 years ago by valentin-noske <[email protected]>

PR fixes

a830b3a649b09c80ce62703d1322b0e92dc432bb authored over 3 years ago by Vincent Musch <[email protected]>

add break

edb665ee595cb889e45687110e2e583fb5848413 authored over 3 years ago by kasrat93 <[email protected]>

getIndexNEW_ for Matrix[i][j]

b8c37163a94f1d06f3da9040101769b71f029d20 authored over 3 years ago by kasrat93 <[email protected]>

[FIX] errors from merge

4346c892369fdd264045dba41ebb04d0b9f7c0f3 authored over 3 years ago by Julianus Pfeuffer <[email protected]>

Merge branch 'fix/hendrik_idfile_integration' of https://github.com/OpenMS/OpenMS into fix/hendrik_idfile_integration

cf77512aba3109433f24f3e7fcae0081bbfbd65a authored over 3 years ago by Julianus Pfeuffer <[email protected]>

[FIX] PLFQ new IDdata: Register transferred IDs with Observations from temporary consensus features.

50193edbb78de3692cb606da51eac7fdee2e0d92 authored over 3 years ago by Julianus Pfeuffer <[email protected]>

WIP: Added some comments

eb49370886c2d453df7aaf0d42291ec1c0ef88d8 authored over 3 years ago by valentin-noske <[email protected]>

'DatabaseSuitability' from utils to topp tools in 'ToolHandler' (#5322)

* DatabaseSuitability from utils to topp tools in ToolHandler

* constructor flag

b4bd89fbbcc0d56143eb5a0145ba847210fb3aaa authored over 3 years ago by TomW <[email protected]>

include Test & edit Vector

eb9bb99ee96bf6e31460eca6a52408a1959cd578 authored over 3 years ago by kasrat93 <[email protected]>

[FIX] Support multiple file origins per ProteinID Run in IDDataConverter

12dc5fa3f14bd0aa31c7bbd79609d43c447bfcba authored over 3 years ago by Julianus Pfeuffer <[email protected]>

Vector

f433bc9300e15a54dc3c4f9d8b7c5ed49bde4fb3 authored over 3 years ago by kasrat93 <[email protected]>

FIX additional string

87d80c75248bb24aac43951c20f64926bf36b9b4 authored over 3 years ago by Oliver Alka <[email protected]>

revert PATH; add cmake at later point

75c5cd978cef460cfd6f8bcb6d657fd5417d5560 authored over 3 years ago by Oliver Alka <[email protected]>

Merge pull request #14 from OpenMS/fix/hendrik_idfile_integration

Fix tests; some improvements to IdentificationData

578f76d2538a7e1ea746f727638c473844fc3de2 authored over 3 years ago by hendrikweisser <[email protected]>

rm Cmake from PATH

1396dcce61981e60128b500ef42eed3bb01a7606 authored over 3 years ago by Oliver Alka <[email protected]>

überlauf fehler gefixed

91f2e51f28698be4ad2dfb4d461fe58b39a4355b authored over 3 years ago by Vincent Musch <[email protected]>

udpate param_ will follow

c4d402a9d9c6721e8bef6150d3d6253108efb9ce authored over 3 years ago by Nora Wild <[email protected]>

neue Matrizen

e200a996dc42dff542d5b4a36dad5f807e5d32c0 authored over 3 years ago by kasrat93 <[email protected]>

Merge pull request #5316 from cbielow/GUI-fixes

a step towards better IonMobility support

6828fc8f79d48685352eab5ce8c40562be493d81 authored over 3 years ago by Chris Bielow <[email protected]>

Add extra CMake config settings to Gitpod VSCode

7952a256b0f72d86e5dead6795e2cd9ad359498e authored over 3 years ago by Julianus Pfeuffer <[email protected]>

Update src/openms/source/SYSTEM/File.cpp

c6e070dc3ce505e469c150fd4083650ef7dafa1a authored over 3 years ago by Timo Sachsenberg <[email protected]>

Update .gitpod.yml

fa07736c0474fb4815087e4e3622c2cb92116dee authored over 3 years ago by Julianus Pfeuffer <[email protected]>

Test cmake win; change fix

45304b75d06931df8f1421dd9fe8f3f970f718f0 authored over 3 years ago by Oliver Alka <[email protected]>

Update .gitpod.yml

9e00733fc3b0333e186c0e7d5054394867e1c68c authored over 3 years ago by Julianus Pfeuffer <[email protected]>

Update README.md

4e9990fd628b3f76eff9b684ae235893cedabd63 authored over 3 years ago by Timo Sachsenberg <[email protected]>

Update .gitpod.yml

b9cca10ee2d7bc76cc21aa8b84fadb70957d871c authored over 3 years ago by Julianus Pfeuffer <[email protected]>

Build lib only during gitpod prebuild

5c47edd1abfd58ff32a2ab0f9f21f57ddb174a2f authored over 3 years ago by Julianus Pfeuffer <[email protected]>

diagnostic message

87f5e7f58db340d28251a1179d9741d7fdf249f5 authored over 3 years ago by bielow <[email protected]>

test: fix necessary

02cd857fa324612d6e8891fd49d1e733eabe3e4f authored over 3 years ago by oliveralka <[email protected]>

Exceptions

0547ce9fa82a880af1fed8021e68682a4f4507e2 authored over 3 years ago by Nora Wild <[email protected]>

simple rename

f96491c1b866f20ccb8b5dc02305dd444005062f authored over 3 years ago by bielow <[email protected]>

Fixed QualityControl.cpp

f9f6c48a9a6f6de1697d98bb5627a363d3c7b6c3 authored over 3 years ago by valentin-noske <[email protected]>

Merge branch 'maxQuant' of https://github.com/vmusch/OpenMS into maxQuant

bb33d025620d1b6b357c84e955e9716d13cda816 authored over 3 years ago by valentin-noske <[email protected]>

Modified comments

ea86e8e2f9a13201ff19a1d760d61c1f3816a964 authored over 3 years ago by valentin-noske <[email protected]>

Merge remote-tracking branch 'upstream/develop' into develop

4a056dbbf7ca99d146e63b853084049ff4ed75df authored over 3 years ago by oliveralka <[email protected]>

Merge branch 'maxQuant' of https://github.com/vmusch/OpenMS into maxQuant

38be50a00cca1fc48937c94523bf609bab9c1b3f authored over 3 years ago by Vincent Musch <[email protected]>

PeptideIdentifications fertig

dc2cd4418e1f74d999c192ff411b562c78970944 authored over 3 years ago by Vincent Musch <[email protected]>

Added comments to the functions

e85b2ffdc3a5d75ddea693dbbdc6d54ee5ef4e76 authored over 3 years ago by valentin-noske <[email protected]>

Merge branch 'maxQuant' of https://github.com/vmusch/OpenMS into maxQuant

c370f19ae246b7b7621365b7fd87f07eeda6fd19 authored over 3 years ago by valentin-noske <[email protected]>

ModifiedMQEvidence source and test file

d53bb64de53522ed48e68abf890e3fb5dee43011 authored over 3 years ago by valentin-noske <[email protected]>

NeedlemanWunsch class test

fa95d5fefe68c509ddde42583133da4f84b7a1b1 authored over 3 years ago by Nora Wild <[email protected]>

amend File::path/basename tests

9337fc6227462ca64a41042128c7fa6eacd904ad authored over 3 years ago by bielow <[email protected]>

force users to accept license terms (#5313)

* force users to accept license terms

* disable check if test flag set

* Update MSFraggerA...

c6074d46961b96426093a0ae91e7750f6841530a authored over 3 years ago by Timo Sachsenberg <[email protected]>

fix compile error

92343cb4d0cc1864221748fde14f3330ce636d0e authored over 3 years ago by bielow <[email protected]>

change implementation of basename and path

b52ed8e9a45033701539d49761272277b6770253 authored over 3 years ago by bielow <[email protected]>

lamda in peptideIdentification

1b8168e008aad445ec17f3eacbeebc257dc4bec0 authored over 3 years ago by Vincent Musch <[email protected]>

seq-align working but not yet optimized

5b15e72bbd0690deb353bdac6641eafecb105c33 authored over 3 years ago by Nora Wild <[email protected]>

Update IdentificationData.cpp

cc9d262b067e7858fa65885909c12831e5d9513f authored over 3 years ago by Timo Sachsenberg <[email protected]>

Merge branch 'idfile-integration' into fix/hendrik_idfile_integration

a49803c24b34bba3e4287d30131f24fe1b403935 authored over 3 years ago by Timo Sachsenberg <[email protected]>

Merge remote-tracking branch 'hendrikweisser/idfile-integration' into fix/hendrik_idfile_integration

1c7022b869ca8d9c5230298363da86881910da68 authored over 3 years ago by timosachsenberg <[email protected]>

[FIX] fixed compiler erros in parameter handling

a0b8aa3c7bdd278fbd1f29d0fad2cb445af018be authored over 3 years ago by Hendrik Weisser <[email protected]>

[FIX] fixed compiler errors in parameter definitions

0a326f96149c47a2b9125a42ebd24aeb051ca9e3 authored over 3 years ago by Hendrik Weisser <[email protected]>

Merge remote-tracking branch 'upstream/fix/hendrik_idfile_integration' into fix/hendrik_idfile_integration

86a1c891b0caecf9623d1a368da812855b111332 authored over 3 years ago by timosachsenberg <[email protected]>

make inputfile mandatory in observation

66774fb5b6defb2f40eede1a18d17d602a9b4c78 authored over 3 years ago by timosachsenberg <[email protected]>

Merge branch 'develop' of https://github.com/OpenMS/OpenMS into idfile-integration

567f0cc93c32a1a3bb436ac1db4d8e8f3fa50330 authored over 3 years ago by Hendrik Weisser <[email protected]>

[API] IdentificationData: made ref. to input file required in struct 'Observation'

8a4931b08d9e16c7760267e81325ad95d461a060 authored over 3 years ago by Hendrik Weisser <[email protected]>

[FIX] add missing include

d6e58da28525a197c19bc9c8cd309fc95978ee12 authored over 3 years ago by Hendrik Weisser <[email protected]>

Update IdentificationData.cpp

62a39e06d2fca00d5499c5dc2c6f3734b6a9201b authored over 3 years ago by Timo Sachsenberg <[email protected]>

adding defaults

7989a03b8a11ea4106d582e38fff8c3b474734dd authored over 3 years ago by bielow <[email protected]>

re-opening the box...

1a2abd8031458d2201d69bf425f7efb4b8c38d91 authored over 3 years ago by bielow <[email protected]>

force check of input file name

4a1bbb8d3e6aadf2591d651c9764df9bae5f633d authored over 3 years ago by timosachsenberg <[email protected]>

reverting Pandoras' Box...

0c27d1b980fb4e881d1a3ad647708adee2fd45c6 authored over 3 years ago by bielow <[email protected]>

revert Precusor changes since rule of 0 for Precursor prevents noexcept move-ctor for MSChromatogram in VS2019 ...

6047e1fa89b776a0e501386c1ae20aeca6b556a2 authored over 3 years ago by bielow <[email protected]>

add more test cases

bb221376bc917f031fb3c516f2bf6ba4eef1868c authored over 3 years ago by bielow <[email protected]>

Merge remote-tracking branch 'upstream/develop' into fix/hendrik_idfile_integration

9e597a6c0c9378b5dc8b01f368bb062bf5ae96f1 authored over 3 years ago by timosachsenberg <[email protected]>

fix compile error

4e98ccfe935ca801255e46d71b1c6a436f05feb6 authored over 3 years ago by bielow <[email protected]>

rename function

ce959278378624798c46ee5c57462be14dc054b1 authored over 3 years ago by bielow <[email protected]>

rename to coform to coding conventions

ed3ab2f5c2a1b151064d426a848509026d1d11de authored over 3 years ago by bielow <[email protected]>

Fixed error of extracted fuctions

42410fc5048936e1a51a18c970ecae56d0e9c56e authored over 3 years ago by valentin-noske <[email protected]>

seq-align working but not yet optimized

213b6a66952dcb14b4cdfdcfd04dc06e714c6fd1 authored over 3 years ago by Nora Wild <[email protected]>

small fixes regarding empty fields

0dddb18d4dcdb65fab81e55222a70d3add99a2e6 authored over 3 years ago by timosachsenberg <[email protected]>

Merge pull request #5317 from jpfeuffer/fix/ProtQuantWEmptyProts

[FIX] ProteinQuantifier error with empty protein ID.

3608aabc6397cfa8c385c2e5b6546ec85fedb489 authored over 3 years ago by Julianus Pfeuffer <[email protected]>

adapt test output too

967f02ad73f7e493d7d07dbf9100b54f54b83634 authored over 3 years ago by Julianus Pfeuffer <[email protected]>

adapt tests to fake inference.

ff98b2ef014198abcc46475a74c06e093ac6ff32 authored over 3 years ago by Julianus Pfeuffer <[email protected]>

[FIX] ProteinQuantifier error with empty protein ID. Also fixed a code warning.

e69043f51afb080026e858f3ce748646f0a85a04 authored over 3 years ago by Julianus Pfeuffer <[email protected]>

Merge branch 'GUI-fixes' of https://github.com/cbielow/OpenMS into GUI-fixes

297197c29850cf253cdf2bf465c93dbcdf2594ee authored over 3 years ago by bielow <[email protected]>

preliminary refactoring

14b29c27ca83045624f08e683213abb2eb3acbac authored over 3 years ago by bielow <[email protected]>

support flexible sorting by arbitrary metrics for MSSpectrum

d923c305c075a8c6362713b4854f74fbb8ce9c43 authored over 3 years ago by bielow <[email protected]>

pep_hits_ neu

5548a9b7d98eb01c04a317217abdc97ad7e460df authored over 3 years ago by Vincent Musch <[email protected]>

Merge remote-tracking branch 'hendrikweisser/idfile-integration' into fix/hendrik_idfile_integration

3d8157a29554d8adf2bfd1c82939cfb5188f40c4 authored over 3 years ago by timosachsenberg <[email protected]>

additional debug output in exception

2f48bf09dc525e8a4a8c13a5955e8427c74d774c authored over 3 years ago by timosachsenberg <[email protected]>

Merge remote-tracking branch 'upstream/develop' into fix/hendrik_idfile_integration

74fddad286027494dae2db4c62983d73efaab2ea authored over 3 years ago by timosachsenberg <[email protected]>

seq-align not yet compiling

5502882ac6a20e1e4c46c7091e50e463ca47a11f authored over 3 years ago by Nora Wild <[email protected]>

renamed operator+= and more error messages

3611ef01a5150c6a4cafa350a585acd4cadb91f1 authored over 3 years ago by Timo Sachsenberg <[email protected]>

bug fixing

a4264d1e7f65422485ac4753ed256f22a56d65e7 authored over 3 years ago by Vincent Musch <[email protected]>

seq-align not yet compiling

ca23e076a943eb8dc739eb31b517ababc4473741 authored over 3 years ago by Nora Wild <[email protected]>

expand Histogram

406941c730a78fde4974ca00df56a49d33f6478e authored over 3 years ago by bielow <[email protected]>

Merge branch 'maxQuant' of https://github.com/vmusch/OpenMS into maxQuant

e7e22193b8c7de08db757aab6ab9a7972d7d65c0 authored over 3 years ago by Vincent Musch <[email protected]>

outsourcing of fillConsensusPepIdMap

b160ae535dc2985f5bdd4e958c733254360efb81 authored over 3 years ago by Vincent Musch <[email protected]>

add the correct test?

d749e1285b1c48f7126c8184e5b2dab073c824eb authored over 3 years ago by Julianus Pfeuffer <[email protected]>

Bit of cleanup and some debug comments

98d99834952d20148d4e93a209b35d21b5306cbf authored over 3 years ago by Julianus Pfeuffer <[email protected]>