Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/OpenMS

The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS

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ed710d1b4d1e770fb99c114e890721864212f092 authored over 2 years ago by bielow <[email protected]>
Merge pull request #6065 from bernt-matthias/topic/redundant-wd

SiriusAdapter: remove redundant setting of working dir

95a938c152f78bdb0a5941a09625c82d5b6bc137 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Update doc/doxygen/public/QuickStart.doxygen

Co-authored-by: Timo Sachsenberg <[email protected]>

25fdf91d603220c4ed84d0ad14ac2d93648932e6 authored over 2 years ago by greengypsy <[email protected]>
Merge pull request #6069 from cbielow/fix_trafo

Fix trafoXML parsing

216ab3e1e5fc9ae232e52a6a52d1542669c2d8ce authored over 2 years ago by Chris Bielow <[email protected]>
minor opt

a155f1c74cb3aaee90c4f4510737f8cb3ad7335b authored over 2 years ago by bielow <[email protected]>
make old TrafoXML's backwards compatible again

8177a506c9e658caa8d20c7db8693a9d739d9faa authored over 2 years ago by bielow <[email protected]>
Uncomment imul

b56138f4c0d22832f535dd50897135f351aefc67 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
remove redundant setting of working dir

7aa15a545ecaa6dc23fb504eb6041f7c2f39569a authored over 2 years ago by Matthias Bernt <[email protected]>
add imul

5ce7e93a44881bc8935b86962d43bb14af06754d authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Uncomment wrapping of other operators in Empirical Formula

Fixes #5914 if it runs through. I have no idea why it was uncommented.

d5d8340866b4576cf02ec56b7010b2220c7d51a4 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
edited NeedlemanWunsch.h

bb915b381f625dd0f0bd43fad4e0a37ded581534 authored over 2 years ago by greengypsy <[email protected]>
added an example description of the tutorial AA sequence as none previously existed

4191650bb3f6a611f759d6adb055dc3a08a2db51 authored over 2 years ago by greengypsy <[email protected]>
minor edit of TOPP_concepts.doxygen

8e46073c2804772db79a0a89c92525a064da8361 authored over 2 years ago by greengypsy <[email protected]>
added a short intro and background to quick start guide

c94673d7eebe54133b068a5c51d2012227bacdb5 authored over 2 years ago by greengypsy <[email protected]>
minor edits to QuickStart.doxygen file

3b9503293af3c857fbec6bd6e614014265d8829a authored over 2 years ago by greengypsy <[email protected]>
test edit of QuickStart.doxygen

ad2304d03cf24671d556e7274f6ed7dd9170c810 authored over 2 years ago by greengypsy <[email protected]>
Merge pull request #6060 from matchy233/fix/boost-linking-error

[FIX] Add FASTAContainer_test to Boost_dependent_tests

cacde2a4dc6d34ef44ab36e2c0df6691f39a4222 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Add FASTAContainer_test to Boost_dependent_tests

5dbb636ac745ccd3787a583686675da8296f6914 authored over 2 years ago by matchy233 <[email protected]>
fix: small updated to library intensity in construct transition list

b36e3c62d53062bef0000e3b0db988e80ab9374a authored over 2 years ago by dmccloskey <[email protected]>
fix: major modifications to DDA related code to allow for transition list construction and spectral export

58787e0d4f9edefc42ffc1b330049bdf096e49e8 authored over 2 years ago by dmccloskey <[email protected]>
fix: added check for unannotated spectra in

3ea0967e332eb9147d4a71d16a6ae1e255eea714 authored over 2 years ago by dmccloskey <[email protected]>
Merge pull request #6053 from hbeschorner/detect_decoys

[FIX] DecoyDatabase detects already decoy'd DBs

301882072d307d45d882890abe9bfa155a456719 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Addressing Chris' comments - FLASHIda sort bug fixed2

536717405aa8262ec6bf2d8e05196e3d9d5a57e3 authored over 2 years ago by kyowonjeong <[email protected]>
Addressing Chris' comments - FLASHIda sort bug fixed2

4319caba9518434ce33742b5f4213a078e1a0282 authored over 2 years ago by kyowonjeong <[email protected]>
Added force flag to allow all custom decoy strings

f451cc65f6fb9e7b342f97168a273d2ae0d04a17 authored over 2 years ago by vrossow <[email protected]>
Added class test for findDecoyString and countDecoys

d1d2019b37628d757468579c364a18d4e84ddade authored over 2 years ago by vrossow <[email protected]>
some minor fixes

197e42e4d4fd577b4ffddc4d5f5a3fdf677f4745 authored over 2 years ago by beschorneh32 <[email protected]>
Merge remote-tracking branch 'upstream/develop' into uclacds-develop

49512c044979c94ae57decd621022d1b4db8fff4 authored over 2 years ago by zhuchcn <[email protected]>
[TEST] for Range and Dim mapper classes

1ed72435d2146493247f031039bed111e7d8d4e9 authored over 2 years ago by bielow <[email protected]>
[FIX,BUILD,PYOMS,TYPING] add import as second line?

c5f5cec1ef27a24e221d49f63d59e2ddeaa52683 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6043 from Amit0617/docsday1

[DOC] fix links on github readme and doxygen tutorial

aee47e7defe032bdd9067a0f115ae324e5798607 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
link addresses

1c5e2abed5cd9be933b4f74b7efa930792aba139 authored over 2 years ago by amit0617 <[email protected]>
[Gitpod] update clangd in dockerfile to 14

49baa3bf729834201dc46482c7b34dc1671910b0 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
removed our new exception, wasn't necessary anymore

003d6d6fdacf224f1c82f4e31fb4dbc9bd1924fd authored over 2 years ago by beschorneh32 <[email protected]>
some (minor) changes and revisions

f28b4a3c17cf0c6d2564ff98564f5dcae94609df authored over 2 years ago by beschorneh32 <[email protected]>
Merge pull request #6041 from OpenMS/fix/pyoms_typing_imports

[FIX,PYOMS,TYPING] add global imports to every pyi

b0f43dc8c06c3281f7b218734f80c0aacc63725a authored over 2 years ago by Julianus Pfeuffer <[email protected]>
no bup suffix and add newline

58dc7451230ee224c8df4cc2fe0b8c9045fb4d0b authored over 2 years ago by Julianus Pfeuffer <[email protected]>
[FIX,PYOMS,TYPING] add global imports to every pyi

3c57db653bbb1bc00accbf92dcf924e3c36bc8b3 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6026 from enetz/fix/OpenPepXL_test_files

[FIX] update OpenPepXL test files that fail in nightly

df8d8f5bff67340bf7b26d091e56f9c205e591d1 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
[FIX] update OpenPepXL test files that fail in nightly

Probably related to updated contrib libs (zlib)

ecb45a7fbf680d94bf5e969f064f820c74244cf6 authored over 2 years ago by Eugen Netz <[email protected]>
[FIX] make Base64 encoded xquest.spec.xml spectra more robust

slight differences in rounding can cause the Base64 encoding to change, which is difficult compa...

0bb70f97637405beb132c6caf97e41f190025af9 authored over 2 years ago by Eugen Netz <[email protected]>
Merge pull request #6036 from OpenMS/jpfeuffer-patch-5

[BUILD] Use Cmake exports from boost

1e3f8b3534dce57c717b4ce912f2e766ae7296c3 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
try to build with header only math stuff

d78c426924e05b68bfe735530bd121a2e9a6b250 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
converting from old visible_range to newer more flexible structure

f5f63ae2b8e05da32a65914c9dd3216d7b47bd0d authored over 2 years ago by bielow <[email protected]>
more Mappings

3590f4d0c1afd73a77049eab795fa95da61858d4 authored over 2 years ago by bielow <[email protected]>
more convenience functions for Ranges

ffb442115989cbdc29149b8e9626eac07392f364 authored over 2 years ago by bielow <[email protected]>
add operator

7b1973c71dda869a9ced54b1fad526b34f520f35 authored over 2 years ago by bielow <[email protected]>
fix typo

860c0bfc42b9d7e2ebc23fc1b1e9127120598895 authored over 2 years ago by bielow <[email protected]>
expose constant begin/end

d6e7076fc94c8c2fdada39edb52539b39f6b52c6 authored over 2 years ago by bielow <[email protected]>
Use static boost in Actions CI

Not sure why it ever worked.

218f8178f2b13b23391ba73a3c318363c182f416 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Require the libs in the first place

c159ac297a9706f92d0676079d0f3d82ded82d2a authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Use Cmake exports from boost

c909b8f2828a2e053faa54bbe7e88a1200fd97d1 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6024 from axelwalter/feature/wrap-IIMN

[Feature] Wrap IonIdentityMolecularNetworking

963e3a5a9ae67028247e3bc7c1421df201519fe0 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
added us to the AUTHORS file

36c3671c6456eb71dc29ebfec1814213bf6d610b authored over 2 years ago by beschorneh32 <[email protected]>
added tests for new function of DecoyDatabase.cpp and changed other tests slightly to fit the new limitations of DecoyDatabase.cpp

bab4ed8d402e7beb4cdaf6f865a6029243cb8903 authored over 2 years ago by beschorneh32 <[email protected]>
added check for already decoy'd inputs to DecoyDatabase.cpp and added some limitations for the allowed decoy_strings, so the decoy_strings are recognised by the check

5c1a48b1e4d582fe5dabf5dd8a09db32cea0b40d authored over 2 years ago by beschorneh32 <[email protected]>
changed interface of FASTAContainer.h so individual parts are accessible

3e4ef060ded5e0b267fc17354475978b0545d674 authored over 2 years ago by beschorneh32 <[email protected]>
added InvalidInput exception

60ad711529e4daf477094da30a8ba4074ac0b635 authored over 2 years ago by beschorneh32 <[email protected]>
Addressing Chris' comments - FLASHIda sort bug fixed.

c7cc12eef4ca917ac65576e9df5ee9a3876ba5d0 authored over 2 years ago by kyowonjeong <[email protected]>
Addressing Chris' comments - FLASHIda sort bug fixed.

7e02b5c89d0d004d1013aa70f6de6ab08f305c5e authored over 2 years ago by kyowonjeong <[email protected]>
Addressing Chris' comments - FLASHIda sort bug fixed.

5e682be0232e2595c22b16a0b8466b6115a9c8a7 authored over 2 years ago by kyowonjeong <[email protected]>
Addressing Chris' comments - charge score bug fixed

4bd95897905f8bb0492d13284a1dba2c17286ab9 authored over 2 years ago by kyowonjeong <[email protected]>
fix for error: enum constant in boolean context [-Werror=int-in-bool-context] (#6035)

5d49de09c8b7d03fa9ef1e7b2efbae05a23f616f authored over 2 years ago by Timo Sachsenberg <[email protected]>
Addressing Chris' comments - charge score bug fixed

51b7a000f3acd21acc9b0d9aa38d1d5865f19c5b authored over 2 years ago by kyowonjeong <[email protected]>
Update openms_clang_format_add_and_commit.yml

22ce99cffbc55d4aeae09b7a6e2b4d05b32d5e6a authored over 2 years ago by Timo Sachsenberg <[email protected]>
Addressing Chris' comments - ing

877328f90437a4f97aaa295cb3100d7ac42b61c3 authored over 2 years ago by kyowonjeong <[email protected]>
Update openms_clang_format_add_and_commit.yml

2d524406e96b4fb07e5d2e6ed43f0ccf315d0969 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Update openms_clang_format_add_and_commit.yml

71efa1c6614946ac5ee181b9987fba6c15a00443 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Update openms_clang_format_add_and_commit.yml

ff84792010afbed77986a52b26d10b1f5fa934e5 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Update openms_clang_format_add_and_commit.yml

cb2356609328b27be708a611e1b43edceb4b7faf authored over 2 years ago by Timo Sachsenberg <[email protected]>
[FIX] made OpenPepXL output compatible with conversion to OMS format (#6034)

* [FIX] made OpenPepXL output compatible with conversion to OMS format

* [TEST] updated OpenP...

887d1f3056ae1e7bbc1733a910dba5df33502e0e authored over 2 years ago by Eugen Netz <[email protected]>
added WizardHelper class to be shared with other Wizards (#6033)

* added WizardHelper class to be shared with other Wizards

* Update src/openms_gui/include/Op...

d5d3d7e81aa05bab1cd8868a7356ca67b8f71c7c authored over 2 years ago by JihyungKim <[email protected]>
[FIX] BasicStatistics: reasonable results with vectors of zeroes (#6029)

* [FIX] BasicStatistics: reasonable results with vectors of zeroes

`BasicStatistics` `mean_` ...

e7445b02ce539f7344bccaf0ef1c38aa79de3587 authored over 2 years ago by Eugen Netz <[email protected]>
Addressing Chris' comments

ec3950b306a8f3fa9086ef1b7cbaab53c33addbc authored over 2 years ago by kyowonjeong <[email protected]>
Addressing Chris' comments

5c358718a2853de8001345fcef7a789a144d0c13 authored over 2 years ago by kyowonjeong <[email protected]>
Update openms_clang_format_add_and_commit.yml

f325721b95ac62ba512158e50169dea16ae0925e authored over 2 years ago by Julianus Pfeuffer <[email protected]>
[TEST] move DimMapper to OpenMS lib; add test

78b3508a79456c1bd6e59ccdf51da40e11e64481 authored over 2 years ago by bielow <[email protected]>
added some convenience functions

c3cc31c2c53380cc9bb461f37baf7cfc7c87c6c2 authored over 2 years ago by bielow <[email protected]>
extend ClassTest with simple TEST_TRUE / TEST_FALSE macros

dc4a5669b3f45a43eab3a73b448c6f462f1cebe1 authored over 2 years ago by bielow <[email protected]>
Merge pull request #6023 from Waschi97/feature/TSGDialog/EmpiricalSpectra

[Feature] Added Metabolite Isotope Calculation to TSGDialog of TOPPView

0f624db7513e5b94f554eb91de6fc6f23edcc086 authored over 2 years ago by Chris Bielow <[email protected]>
added metabolite support to changelog

9dfae921ba930465195a3f2f6c40709e96b22499 authored over 2 years ago by TomW <[email protected]>
push changes in clang-format commit action

11cf8f7b1acb8d16ba47753398e0bdb6bd60c506 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Update openms_clang_format_add_and_commit.yml

33774fd9b3f9633a7f6f9b0015fefb6f11588fce authored over 2 years ago by Timo Sachsenberg <[email protected]>
update clang format action

0930c1ad9d4cd6608a91ea204a16a9147e0f33e1 authored over 2 years ago by Timo Sachsenberg <[email protected]>
[LOG] fixed typos

6f995504eff432ba24bdd83652674ea9d82645e7 authored over 2 years ago by Hendrik Weisser <[email protected]>
remove FuzzyDiff with FLASHDeconv_test

bd254914dc242fb1c9c39c76424612881e5ef3e7 authored over 2 years ago by JeeH-K <[email protected]>
updated test files

601aa1ec542ec7f50d9b1691550661e2732b900b authored over 2 years ago by JeeH-K <[email protected]>
revert to "mass_error_da_" version

c09d98a168d7bbe16318454018b6b4fa47f74337 authored over 2 years ago by JeeH-K <[email protected]>
wrap static methods as free functions

484475b0c6a95bbd6094c043e75b2a05177aa778 authored over 2 years ago by axelwalter <[email protected]>
Merge branch 'feature/wrap-IIMN' of https://github.com/axelwalter/OpenMS into feature/wrap-IIMN

07e7a7c00b3c43820f08f13675a9d4f4774b92c9 authored over 2 years ago by axelwalter <[email protected]>
test: removed unnecessary argument, moved some code out of loop

78b520077af63c7832424bb02328b1bcfd461f13 authored over 2 years ago by Tom Waschischeck <[email protected]>
removed setting combo box in Ctor, comments

3735cea505af8bf06d26b13948a15ae4e4ad81f9 authored over 2 years ago by Tom Waschischeck <[email protected]>
added isotope settings to isotope model group box

4de07e21f5e1cdb2376563acfa3c80f417a784e7 authored over 2 years ago by Tom Waschischeck <[email protected]>
some QV to QV2 with message, re-added seqTypeSwitch_() in constructor

b68fc06cda7087bb9f129017aad4c227647eafe6 authored over 2 years ago by Tom Waschischeck <[email protected]>
[CMake] Add newer boost versions to search for

3f681140946b14b457eaa8c62a85159f5d3f126d authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into feature/FLASHDeconvOnly

9dd5cab7ddd7ac7f074cca2823e0af7d5cc3c9ee authored over 2 years ago by Timo Sachsenberg <[email protected]>
wrap IonIdentityMolecularNetworking

21e5840a9d97b48a6cc704ca2de085c64afd6da7 authored over 2 years ago by axelwalter <[email protected]>
add pyopenms test for IIMN

470caf644ef6d77aa69253967432d9d313e7ac78 authored over 2 years ago by axelwalter <[email protected]>
Merge pull request #6021 from enetz/fix/linear_transform

Fix/linear transform

2a4ab5baf6c2fa65e72a6088a831e88a92ca84b4 authored over 2 years ago by Eugen Netz <[email protected]>
minimal revert attempt to fix SVMWrapper_test (#6022)

* minimal revert attempt to fix SVMWrapper_test

* full revert of test

6a4c2349b113e280e978c5e4c16895f04e96e206 authored over 2 years ago by Timo Sachsenberg <[email protected]>