github.com/OpenMS/OpenMS commits | Ecosyste.ms: OpenCollective

Fixed error

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2475 6adb6e08-d915-0410-9...

438fce67e560cd7fdc29235c1bf79a70e3ae51c3 authored about 17 years ago by Marc Sturm <[email protected]>

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2474 6adb6e08-d915-0410-941f-83917bcadc18

bbd0a6b5d506ea2abc833e3690bca0a3c6c591f2 authored about 17 years ago by Rene Hussong <[email protected]>

activated the SuffixArray tests except for SuffixArrayPeptideFinder which still crashes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2473 6adb6e08-d915-0410-9...

460c6c2b30b844ef457227f6b92ea59a6947c7c7 authored about 17 years ago by Andreas Bertsch <[email protected]>

added option nt, for the number of threads to be used by OMSSA

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2472 6adb6e08-d915-0410-9...

72caaf2bb3fd67c93506f9d08e1c43d1288d2f36 authored about 17 years ago by Andreas Bertsch <[email protected]>

improved MascotInfile

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2471 6adb6e08-d915-0410-9...

d711db0de3cac28da5170869124685a15aac30b4 authored about 17 years ago by Andreas Bertsch <[email protected]>

updated XTandem file adapters and XTandem TOPP-tool; Some things are still missing#

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2470 6adb6e08-d915-0410-9...

a500d1f350821118ad4043c3f417c95ce62ecdf8 authored about 17 years ago by Andreas Bertsch <[email protected]>

fixed minor copy&paste mistake in MetaInfoRegistry_test.C

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2469 6adb6e08-d915-0410-9...

ed1188a477c151a6f6e83fe68bbbb6550fdb1991 authored about 17 years ago by muschtafa <[email protected]>

MetaInfo keys need no registration anymore (done by Johannes); minor other changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2468 6adb6e08-d915-0410-9...

160c40ef89f4bcf7fdf92fa6a25f96fe97f6a99e authored about 17 years ago by Marc Sturm <[email protected]>

Factory: Added method allowing to check if a name is registered.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2467 6adb6e08-d915-0410-9...

51d2b962571a144cca96ac4de1ae2fd29fda6b6c authored about 17 years ago by Marc Sturm <[email protected]>

quoted some dollars, $ -> @$. This seems to be necessary in cases like $(MV)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2466 6adb6e08-d915-0410-9...

ac10624a90399652f9617af00c487a570a90b27f authored about 17 years ago by Clemens Gröpl <[email protected]>

more _impl.h, TOPP test docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2465 6adb6e08-d915-0410-9...

c596e92ae787eb93e3c87be757a45df44483c87f authored about 17 years ago by Clemens Gröpl <[email protected]>

added a simple test for comparing a file with itself (only the name is considered)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2464 6adb6e08-d915-0410-9...

85ca4c4be2302ce5a3d109e111b06dda56be2e5c authored about 17 years ago by Clemens Gröpl <[email protected]>

fixed the order of arguments to TEST_FILE_EQUAL

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2463 6adb6e08-d915-0410-9...

159a3854e2948f94431f7e937e183ca6035f76bb authored about 17 years ago by Clemens Gröpl <[email protected]>

Oops, that one data set fails, commented it out. Strangely it does work on simulated data.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2462 6adb6e08-d915-0410-9...

25ae4a594f53aba195c6b0a0df8794a12e8d64d9 authored about 17 years ago by Clemens Gröpl <[email protected]>

-TOPPview: FileSelection dialog now remembers its last directory

-improvements on MinGW port

TOPPview and majority of TOPP-tools running
static libs only (for n...

713975083188d923ddbf9240d07456583adcb24a authored about 17 years ago by Chris Bielow <[email protected]>

Anleitung zum installieren von WinOpenMS

..der Rest kommt gleich..

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS...

2dbc29e9c94a45ec9931bbb3b73f82e6784bb2d6 authored about 17 years ago by Chris Bielow <[email protected]>

many changes related to feature finder, IDX renamed to IndexPair, introduced _impl.h files. This is supposed to compile and withstand TESTs...

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2459 6adb6e08-d915-0410-9...

58c86753fd4496aa5041448ad0ff7cfd4c150bd7 authored about 17 years ago by Clemens Gröpl <[email protected]>

PRECISION() changes are reported in -V mode now

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2458 6adb6e08-d915-0410-9...

6f8fbbeb22685f6f486f7504d653de6c7b6d47b4 authored about 17 years ago by Clemens Gröpl <[email protected]>

cosmetic changes (face lifting etc.)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2457 6adb6e08-d915-0410-9...

2272a87b0f9361fbe75d5ff28bbbc8004442121b authored about 17 years ago by Clemens Gröpl <[email protected]>

whitespace changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2456 6adb6e08-d915-0410-9...

eab27a8bb90525f1ee969237995512644e2f4e87 authored about 17 years ago by Clemens Gröpl <[email protected]>

Added a section about _impl.h files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2455 6adb6e08-d915-0410-9...

27abde9be27be4ee863c2315ca0d59feb8ac42c8 authored about 17 years ago by Clemens Gröpl <[email protected]>

Changed the algorithm in AsymmetricStatistics to avoid a magic constant. Clarified usage of BasicStatistics (docu) and removed some unused fancy constructors.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2454 6adb6e08-d915-0410-9...

0f35a5372f262f4da8ec1daaa387a3a56b7ece64 authored about 17 years ago by Clemens Gröpl <[email protected]>

minor changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2453 6adb6e08-d915-0410-9...

442a1bd8e6e85c607c24508fc5302f1a5b52df9b authored about 17 years ago by Marc Sturm <[email protected]>

Hopefully fixed SeqAn header search now

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2452 6adb6e08-d915-0410-9...

87040f1e093c0974fc3d0b88ed1d45488877f5e7 authored about 17 years ago by Marc Sturm <[email protected]>

Fixed a bug in SeqAn header search

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2451 6adb6e08-d915-0410-9...

6b08511e1123f8651440147ed62d3c885815641a authored about 17 years ago by Marc Sturm <[email protected]>

Fixed a bug in SeqAn header search

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2450 6adb6e08-d915-0410-9...

9d7ccd87bfaa868deccf66837d98b857b12f059e authored about 17 years ago by Marc Sturm <[email protected]>

Added validation of written mzXML files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2449 6adb6e08-d915-0410-9...

e067808810fa3309c6f7268ec947ece85e2da00d authored about 17 years ago by Marc Sturm <[email protected]>

Implemented PersistentObject::clearChildIds_; implemented configure option --prefix; moved data folder to share/OpenMS

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2447 6adb6e08-d915-0410-9...

f70e94367a3154b9734c519e06976467254cb514 authored about 17 years ago by Marc Sturm <[email protected]>

corrected capital letters in ini files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2446 6adb6e08-d915-0410-9...

0f3b364b2f70bca8211e13651d13090f792fc3a8 authored about 17 years ago by Martin Langwisch <[email protected]>

Fixed bug in handling of TOPPView ini file version

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2445 6adb6e08-d915-0410-9...

abd9b364c6fa6a5747817a45e112e662676b38e4 authored about 17 years ago by Marc Sturm <[email protected]>

Updated to new html documentation location

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2444 6adb6e08-d915-0410-9...

608e4000b47c0d3238268aa9e220c3970f05765e authored about 17 years ago by Marc Sturm <[email protected]>

New documentation start page; added html docu to doxygen

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2443 6adb6e08-d915-0410-9...

ab474473de830f68b8996f09e3f3c29b7aaf7617 authored about 17 years ago by Marc Sturm <[email protected]>

Finally removed SchemaHandler; Rewritten MzXMLFileHandler; docu changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2442 6adb6e08-d915-0410-9...

822f4aa192deab78ff7080a4fd6ef31902c16d0e authored about 17 years ago by Marc Sturm <[email protected]>

removed bug (creation of new db from old ones was unreachable), storing exit code as to remove temporary files at the end only

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2441 6adb6e08-d915-0410-9...

717ac1fb4a8cef39fb982ce05c3b81a242230ef4 authored about 17 years ago by Martin Langwisch <[email protected]>

added version to calculate ProtonDistribution for charge states > 2

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2440 6adb6e08-d915-0410-9...

ce3781194ec117fd8fb1a1830f7d50010a77cbae authored about 17 years ago by Andreas Bertsch <[email protected]>

Removed SchemaHandler from mzData

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2439 6adb6e08-d915-0410-9...

51f64261a71acf6ab1dfc5d24ba19adbd0196f0d authored about 17 years ago by Marc Sturm <[email protected]>

Fixed clean target

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2438 6adb6e08-d915-0410-9...

44b831595ffecea51d6f114d879ee59df6e56174 authored about 17 years ago by Marc Sturm <[email protected]>

Fixed some more gcc 4.2 warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2437 6adb6e08-d915-0410-9...

e590c96f29124325a010e7343e5d677dcb865a3c authored about 17 years ago by Marc Sturm <[email protected]>

added read routine for MGF (MascotInfile) files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2433 6adb6e08-d915-0410-9...

8717c42d9210dc36853d6a837737600aa9104b8d authored about 17 years ago by Andreas Bertsch <[email protected]>

Removed SchemaHandler from FeaturePairsXML file

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2432 6adb6e08-d915-0410-9...

b56afa8b65b9df7274b1548fbb1aac80ad244dbd authored about 17 years ago by Marc Sturm <[email protected]>

Removed SchemaHandler from FeatureXMLFile

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2431 6adb6e08-d915-0410-9...

c4279e3de414fbd61ba58cfd97027997d86ca866 authored about 17 years ago by Marc Sturm <[email protected]>

Partly removed SchemaHandler; Rewritten GridFile

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2428 6adb6e08-d915-0410-9...

a11036f99a14d1882f1052af4e6d8d064647f201 authored about 17 years ago by Marc Sturm <[email protected]>

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2427 6adb6e08-d915-0410-941f-83917bcadc18

79ab71864b78b4db38e4e7b3dd8df6130e802730 authored about 17 years ago by Eva Lange <[email protected]>

fixed bug; if now real protein id is available, the filter removed the protein ids (needed for identifiers)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2426 6adb6e08-d915-0410-9...

4f8ed16ea8dd9d8bc5e018df5617bd1bbb0dab61 authored about 17 years ago by Andreas Bertsch <[email protected]>

Removed a bug in ConsensusMap (merge()). Mz dimension is now longer corrected during alignment.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2425 6adb6e08-d915-0410-...

bedb70a2c0268545cf9485ceea8e477b680149d4 authored about 17 years ago by Eva Lange <[email protected]>

Removed g++ 4.2 warnings in tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2423 6adb6e08-d915-0410-9...

7c857b9d3e9dfbb61b4dda8471ba85e6e691e4bf authored about 17 years ago by Marc Sturm <[email protected]>

Fixed bug that prevented configure from finding Qt libraries with version suffixes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2422 6adb6e08-d915-0410-9...

3ee4b255fc5c3e91e54527af27621bf84b8de749 authored about 17 years ago by Marc Sturm <[email protected]>

Removed most of the gcc 4.2 warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2418 6adb6e08-d915-0410-9...

42145f56b7129606afa6e19be673d653896b49b0 authored about 17 years ago by Marc Sturm <[email protected]>

Added installation instructions for Windows

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2417 6adb6e08-d915-0410-9...

da9e2df2f791f99204122cbc5beb8ca284ea6ba7 authored about 17 years ago by Marc Sturm <[email protected]>

Patches for Windows port

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2414 6adb6e08-d915-0410-9...

8d8cd99fc1a1889a7bdce5ff8942ee8012c8b0a8 authored about 17 years ago by Marc Sturm <[email protected]>

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2413 6adb6e08-d915-0410-941f-83917bcadc18

ceb9c3282cb30130c70bed904a06ffcf780f0cb3 authored about 17 years ago by Rene Hussong <[email protected]>

ConsensusXMLHandler is derived from XMLHandler now (was a SchemaHandler)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2410 6adb6e08-d915-0410-9...

c1e34956ad927843a1efaf2670991fbcf4793a26 authored about 17 years ago by Marc Sturm <[email protected]>

Moved SchemaFile to XMLFile; XMLFile is now thecommon base class for all XML file adapters (handles validation too)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2409 6adb6e08-d915-0410-9...

432e7fe5860f973a88bb4d6253776d8cfd17e126 authored about 17 years ago by Marc Sturm <[email protected]>

Moved SchemaFile to XMLFile; XMLFile is now thecommon base class for all XML file adapters (handles validation too)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2408 6adb6e08-d915-0410-9...

08eb5bdbfbf603bef3967ada89319b7909f4b85d authored about 17 years ago by Marc Sturm <[email protected]>

Fixed minor bugs

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2407 6adb6e08-d915-0410-9...

fdcf6d1f6d830500bcdba130b835aa1898c8af84 authored about 17 years ago by Marc Sturm <[email protected]>

Added first FF TOPP test; Added summary at the end of FF run

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2406 6adb6e08-d915-0410-9...

c749ce7e4f41a4b93c3cec03bcbcc43b41e7d21a authored about 17 years ago by Marc Sturm <[email protected]>

worked on SimpleModelFitter

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2405 6adb6e08-d915-0410-9...

d367bd8de4821252fc5beac85c90eb743cf8a111 authored about 17 years ago by Clemens Gröpl <[email protected]>

Added test for PeakFileOptions of FeautureXML; Doku changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2404 6adb6e08-d915-0410-9...

4fa9f627f75e3402ad966ce36f7509682971de98 authored about 17 years ago by Marc Sturm <[email protected]>

Updated OpenMS and TOPP tutorial to new FF; updated IdXML schema

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2402 6adb6e08-d915-0410-9...

b1e3c4bda4a96d3169fc5808aa4eed380382f914 authored about 17 years ago by Marc Sturm <[email protected]>

Updated Transformers (Parameter documentation)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2401 6adb6e08-d915-0410-9...

6353af5af992e5e3d77dfd263a5a3c9f8efbe38c authored about 17 years ago by Marc Sturm <[email protected]>

Finished 'advanced mode' for ParamEditor; Replaced user by advanced falg in ParamEntry

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2399 6adb6e08-d915-0410-9...

0ec5e0fdb65742f8be3a3c50b1d763320bec7ff4 authored about 17 years ago by Marc Sturm <[email protected]>

Implemented 'Advanced mode' for ParamEditor

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2398 6adb6e08-d915-0410-9...

b93bfc7dfacf7162032e5cc0e4d560237040607a authored about 17 years ago by Marc Sturm <[email protected]>

Param: fixed schema; added schema location to XML file; added validation to test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2396 6adb6e08-d915-0410-9...

89358eedab2f0c69399eeb01401b50e163223da4 authored about 17 years ago by Marc Sturm <[email protected]>

FileInfo: Added validation of XML files for several formats

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2395 6adb6e08-d915-0410-9...

dd5873493a752511e2ad618b7110c5f8851b38db authored about 17 years ago by Marc Sturm <[email protected]>

Fixed parameter naming convention violation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2394 6adb6e08-d915-0410-9...

929a241a3185df038ed3ab1925fb2a1be4f13a5b authored about 17 years ago by Marc Sturm <[email protected]>

fixed typo

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2393 6adb6e08-d915-0410-9...

88db56c80425c7e8a37f439ccec243d02406c4f4 authored about 17 years ago by Andreas Bertsch <[email protected]>

docu changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2392 6adb6e08-d915-0410-9...

5f19c645a818c4b0894bc14880a44343fe8f3c54 authored about 17 years ago by Marc Sturm <[email protected]>

Improved checking for valid values

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2391 6adb6e08-d915-0410-9...

59614a8f1026bea85b0ed225497620e39368d1f7 authored about 17 years ago by Marc Sturm <[email protected]>

Updated parameter entries (new naming convention); removed minor bug from 3D view

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2390 6adb6e08-d915-0410-9...

ed4c1b31c5b64ba5fde19a88e0159c3259e4aef6 authored about 17 years ago by Marc Sturm <[email protected]>

Implemented simple version of user parameters; fixed handling of descriptions/user in ParamEditor; set user parameters for PeakPicker

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2389 6adb6e08-d915-0410-9...

bfbff55c15232d989bddd5e64f55ac76ba3a7226 authored about 17 years ago by Marc Sturm <[email protected]>

Moved Param to DATASTRUCTURES; Fixed two small bugs

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2388 6adb6e08-d915-0410-9...

b0f6c1f8052564c028a031b4f646411ae184fb46 authored about 17 years ago by Marc Sturm <[email protected]>

Complete rewrite of Param; Fixed bugs in String::substr; docu changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2387 6adb6e08-d915-0410-9...

a2263542293f1e6f5e4cb07dd62f43a3fa733211 authored about 17 years ago by Marc Sturm <[email protected]>

removed orphaned static variable

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2386 6adb6e08-d915-0410-9...

5449a4b3926ae559ede7f9ff285fea546a57e182 authored about 17 years ago by Andreas Bertsch <[email protected]>

Fixed problem in NoiseFilter test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2385 6adb6e08-d915-0410-9...

daeb6ee77a718f64d7d6f3d18b781f64e63ad77b authored about 17 years ago by Marc Sturm <[email protected]>

blab

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2384 6adb6e08-d915-0410-...

2f6453aba338983a42111fa8643c5af8302afc67 authored about 17 years ago by Ole Schulz-Trieglaff <[email protected]>

SimpleExtender_test works again after Oberjoch refactoring

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2382 6adb6e08-d915-0410-9...

d5976a701ec200640bb4693115f64531a19a39e8 authored about 17 years ago by Clemens Gröpl <[email protected]>

maybe something todo

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2381 6adb6e08-d915-0410-9...

8b554ffa44e352203c650cb941154bbf15ecb1c9 authored about 17 years ago by Clemens Gröpl <[email protected]>

naming of parameters as decided in Oberjoch, forbid names like map exp log set

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2380 6adb6e08-d915-0410-9...

23d7fe1783be26605238509e3373cccd7cd0d006 authored about 17 years ago by Clemens Gröpl <[email protected]>

documentation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2379 6adb6e08-d915-0410-9...

e74d31f6f963caecb4f7ba86f3c82ffad694491e authored about 17 years ago by Clemens Gröpl <[email protected]>

double -> DoubleReal

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2378 6adb6e08-d915-0410-9...

fee52696b71b2218174299dca936139551c64f76 authored about 17 years ago by Clemens Gröpl <[email protected]>

fixed wrong header interpretation of FASTAFile; now the whole comment line is used as identifier, and not anly the putative accession

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2377 6adb6e08-d915-0410-9...

ed32eada5db76d6aad59ca72fe7f0763259dfad3 authored about 17 years ago by Andreas Bertsch <[email protected]>

todo changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2376 6adb6e08-d915-0410-9...

9f1fc5a76709a58504e794c285e6d7235168e85f authored about 17 years ago by Marc Sturm <[email protected]>

added schemas dor FeatureXML,FeaturePairsXML,ConsensusXML,IdXML; Written files are checked against schemas now; scheam URLs are included in file header now

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2374 6adb6e08-d915-0410-9...

7926b7c74f9bc967bbdb8e5cf7c69840301eab22 authored about 17 years ago by Marc Sturm <[email protected]>

Fixed problem with correlation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2372 6adb6e08-d915-0410-9...

4f28ed54030621c9b9cf9e8c233643dae8de6689 authored about 17 years ago by Marc Sturm <[email protected]>

OpenMS -> %OpenMS

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2371 6adb6e08-d915-0410-9...

2369e5d0e962431166b747dcaed44618ceeb1a32 authored about 17 years ago by Clemens Gröpl <[email protected]>

fixed some warnings and adapted code to coding styles

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2370 6adb6e08-d915-0410-9...

e5e53afb28467d70f8338578e98b5a0e6b55aa60 authored about 17 years ago by Andreas Bertsch <[email protected]>

added chmod 755 file_version_filter.sh.tmp

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2368 6adb6e08-d915-0410-9...

a987fa1d6e243455acfd3e6dff8ce22797bc27f0 authored about 17 years ago by Clemens Gröpl <[email protected]>

added chmod 755 file_version_filter.sh.tmp

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2367 6adb6e08-d915-0410-9...

5ebc95b94af02baffd195ca22778f05d7b185820 authored about 17 years ago by Clemens Gröpl <[email protected]>

added maintainer info to class doc

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2366 6adb6e08-d915-0410-9...

09af7e4520a246684c85bac5b60257759e96a983 authored about 17 years ago by Clemens Gröpl <[email protected]>

initial

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2365 6adb6e08-d915-0410-9...

3a3bb6f0cc34fe12eba65e761130a98977a1059f authored about 17 years ago by Clemens Gröpl <[email protected]>

added FeaFiModule test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2364 6adb6e08-d915-0410-9...

761f16248fae1d522d4383d7ad007336df28c815 authored about 17 years ago by Marc Sturm <[email protected]>

MzDataFile: Fixed crash caused by spectra with lots of peaks (Splitting of CDATA in SAX)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2363 6adb6e08-d915-0410-9...

697e7ed9109895eb71245688197a5093a2e3506e authored about 17 years ago by Marc Sturm <[email protected]>

FeatureFinder: added some more tests; udated docu; updated Parameter documentation file

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2362 6adb6e08-d915-0410-9...

5f1ef4f44e050ddaadddcee9313c1fe73fe3a0de authored about 17 years ago by Marc Sturm <[email protected]>

Updated tests: pearsonCorrelation + SimpleExtender; Added concept for parameter handling in FeatureFinder; minor other changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2361 6adb6e08-d915-0410-9...

2f958bcc0f42824ef581838b37a4376fdc4d170d authored about 17 years ago by Marc Sturm <[email protected]>

first compiling version of new FeatureFinder; docu changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2360 6adb6e08-d915-0410-9...

c9832b0d59101d28e7b457caf1fe99a346b7c015 authored about 17 years ago by Marc Sturm <[email protected]>

some more fixes for FeatureFinder

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2359 6adb6e08-d915-0410-9...

82e599221e01c9ce3a9fb29265d246d2d969964c authored about 17 years ago by Marc Sturm <[email protected]>

Fixed some errors; one undefined reference left

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2358 6adb6e08-d915-0410-9...

b7e8fe7ba46230d90ec4c84498d25a7f2fd9d1dc authored about 17 years ago by Marc Sturm <[email protected]>

Retreat Oberjoch 2007: New FF design; Added SeqAn classes; several minor fixes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2357 6adb6e08-d915-0410-9...

a2057f9f90aafd461a7bf996c547edb36000e8c7 authored about 17 years ago by Marc Sturm <[email protected]>

added a warning for dumb developers

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2355 6adb6e08-d915-0410-9...

5eb27fea84f12fd807024f3e152fc0713e1808aa authored about 17 years ago by Clemens Gröpl <[email protected]>

removed last calls of XMLString::transcode that caused a memory leak

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2354 6adb6e08-d915-0410-9...

60223946973571d1388f6761332d8b1a53e17ef7 authored about 17 years ago by Marc Sturm <[email protected]>