github.com/OpenMS/OpenMS commits | Ecosyste.ms: OpenCollective

added option

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2584 6adb6e08-d915-0410-9...

8e3fb42252cb1224b2fff998266d034a0b38cd71 authored almost 17 years ago by Andreas Bertsch <[email protected]>

Fixed a bug in main Makefile (when using prefix); removed some entries from TOPP dialogs; minor changes to PPFF

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2583 6adb6e08-d915-0410-9...

88b2099e10ef856609cb4671336005de128cfeee authored almost 17 years ago by Marc Sturm <[email protected]>

added parser for header info

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2582 6adb6e08-d915-0410-9...

dc6019648b19177ebea20ccbc2026e428596c62f authored almost 17 years ago by Andreas Bertsch <[email protected]>

suffix array updates

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2581 6adb6e08-d915-0410-9...

254fa4d361f8ab1ce063ec197ddc819970157668 authored almost 17 years ago by Andreas Bertsch <[email protected]>

suffix array updates

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2580 6adb6e08-d915-0410-9...

78ff9308bc1aaaa55560841cae329c8399eb58bf authored almost 17 years ago by Andreas Bertsch <[email protected]>

suffix array updates

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2579 6adb6e08-d915-0410-9...

fe5dabc87fbadc501a96e303d5d61ec5f4136b12 authored almost 17 years ago by Andreas Bertsch <[email protected]>

cosmetic changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2578 6adb6e08-d915-0410-9...

47d1add05d270693e5109ce25900bf593bc53745 authored almost 17 years ago by Andreas Bertsch <[email protected]>

added warning if MSLevel set to 0

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2577 6adb6e08-d915-0410-9...

99b638cd23e620bc25c4455823cbbe0b158d25d0 authored almost 17 years ago by Andreas Bertsch <[email protected]>

advanced parameter changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2576 6adb6e08-d915-0410-9...

298afa03ba4529cc2f587cb4ff432860573fd1ac authored almost 17 years ago by Andreas Bertsch <[email protected]>

advanced parameters changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2575 6adb6e08-d915-0410-9...

497dbfc00e597318b428a7e65d2e36e6b7f73877 authored almost 17 years ago by Andreas Bertsch <[email protected]>

Bug fix (removement of elements after merging).

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2574 6adb6e08-d915-0410-...

6536f9cbe6b78d16b75c12dfbfad1d18712ae50b authored almost 17 years ago by Eva Lange <[email protected]>

updated model

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2573 6adb6e08-d915-0410-9...

2f57304ddd108d67b3325879c76dba0771418842 authored almost 17 years ago by Andreas Bertsch <[email protected]>

Updated mass trace extension

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2572 6adb6e08-d915-0410-9...

8fc141265789095595c8699e4b905eb6fcd70981 authored almost 17 years ago by Marc Sturm <[email protected]>

Changed handling of seed charge estimate (no longer by vote, but up to two charges can be tested)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2570 6adb6e08-d915-0410-9...

b84add58eaf5e502c0e4d062cdfd24d4c93ba8b4 authored almost 17 years ago by Marc Sturm <[email protected]>

- Advanced Params added

- makefile fixed (moc sources will now be remade when necessary, ie. on changes to MSExperiment)
...

533273cca3ca3b9cdb8ad5e0dfbce3275a910354 authored almost 17 years ago by Chris Bielow <[email protected]>

removed potential "div by 0" in BENCHMARKS/runbenchmarks

PILISIdentification_test //deactivated, because it just won't finish under windows

git-svn-id:...

7e26a973cc031d4fb58a25be3417d6dc32c20c1f authored almost 17 years ago by Chris Bielow <[email protected]>

improved scoring scheme

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2566 6adb6e08-d915-0410-9...

df101d2d964235f0cfb57e403c245a1c5512444f authored almost 17 years ago by Marc Sturm <[email protected]>

improved feature quality scoring

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2564 6adb6e08-d915-0410-9...

0b9b393bd71bf247f4fbf08a70444e8799fb111a authored almost 17 years ago by Marc Sturm <[email protected]>

very strange bug in MinGW make which causes "make clean" to fail -> fixed

(for the record: NEVER use a trailing slash in a cd command like: "cd <dir>/"
)

git-svn-id: htt...

929f4a444f1b620ceaffee0286688ed7af6ae408 authored almost 17 years ago by Chris Bielow <[email protected]>

Distinguish basis and advanced default parameters.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2562 6adb6e08-d915-0410-...

839826e50054e4a8584f3c4423cca3d2f3c71ace authored almost 17 years ago by Eva Lange <[email protected]>

Changed advanced parameter default value in Param

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2559 6adb6e08-d915-0410-9...

b15dbe9a68d373c9309471ee68206a9557207815 authored almost 17 years ago by Marc Sturm <[email protected]>

Changed m/z tolerance parameters (the given tolerance is the true tolerance now); isotope fit during extension does not consider m/z scores now; features can no longer contain missing traces in the middle

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2558 6adb6e08-d915-0410-9...

04ccc20b52cb0f8b307d25812c3caf9f2c04e89f authored almost 17 years ago by Marc Sturm <[email protected]>

llok for missing isotope peaks in adjacent scans *before* isotope fit scoring; new quality measure for overall shape; isotope peaks are removed only if this increases the score significantly

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2557 6adb6e08-d915-0410-9...

d61eee80d274d527694cc4422c8b559292d1cad5 authored almost 17 years ago by Marc Sturm <[email protected]>

PPFF: added variable isotope pattern size

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2556 6adb6e08-d915-0410-9...

b4c8eaf0e781fa09e0982b89a449f0227de3b07f authored almost 17 years ago by Marc Sturm <[email protected]>

Improved m/z boundary finding for isotope fit; Improved feature RT position

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2555 6adb6e08-d915-0410-9...

1d3c80c39261a4086967b66420274a116391b007 authored almost 17 years ago by Marc Sturm <[email protected]>

PPFF: changed intensity score calculation; final score threshold (is 0 now); seed threshold (0.01 now); score maps contain only scores>0; seed numbers match those displayed in TOPPView

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2554 6adb6e08-d915-0410-9...

203331aeee230be0380d3124848048fdb27eb6ef authored almost 17 years ago by Marc Sturm <[email protected]>

fixed bug in test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2553 6adb6e08-d915-0410-9...

c0f967dd557eb57c2b7fa9170b1d2a2bc9f74ee3 authored almost 17 years ago by Marc Sturm <[email protected]>

added binned intensity scoring; minor other changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2552 6adb6e08-d915-0410-9...

7a05a843073437cfee3738bee0b0f9af8f6d5f95 authored almost 17 years ago by Marc Sturm <[email protected]>

howto build the documentation on windows

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2551 6adb6e08-d915-0410-9...

69dd0e9ae1b83eecde4a5972b3dd30c0f1d69880 authored almost 17 years ago by Chris Bielow <[email protected]>

updated installation instructions (verified by VMWare installation)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2550 6adb6e08-d915-0410-9...

08faa70137060c96c81487b20732b543edb74093 authored almost 17 years ago by Chris Bielow <[email protected]>

fixed two small bugs in FileInfo (peak type estimation with empty spectra) and PPFF (scaling of trace scores)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2549 6adb6e08-d915-0410-9...

39a8da8eecfa3b92dea287bd65f9b111b62fe377 authored almost 17 years ago by Marc Sturm <[email protected]>

PPFF: changes to allow central calculation of isotope score; TOPPView added charge to Feature contex menu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2548 6adb6e08-d915-0410-9...

91df9b04d257b006f0b26b0286a10f260fbe34d7 authored almost 17 years ago by Marc Sturm <[email protected]>

fixed some potential warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2547 6adb6e08-d915-0410-9...

b013051e05e064c9eccf40a59f2d74b4eaad5a48 authored almost 17 years ago by Andreas Bertsch <[email protected]>

fixed warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2546 6adb6e08-d915-0410-9...

5f8935541f8be46937fab521e6d14f6631452a17 authored almost 17 years ago by Andreas Bertsch <[email protected]>

Better logging; progress report; removed unneeded options

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2545 6adb6e08-d915-0410-9...

9908e81ae6e79d3dda7f1983a3e54eb44c9f47b3 authored almost 17 years ago by Marc Sturm <[email protected]>

fixed bug in BigString

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2544 6adb6e08-d915-0410-9...

53b5e88b3cfaba2ea1f34e4454f46a263a8c4567 authored almost 17 years ago by Andreas Bertsch <[email protected]>

...

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2543 6adb6e08-d915-0410-9...

81911f57c8c89e0a771e8a6d5825372d2ffb70fe authored almost 17 years ago by Andreas Bertsch <[email protected]>

add title to metainfo if not parsable

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2542 6adb6e08-d915-0410-9...

be92156990b39cf7872596bfe558f3aeb5210b0c authored almost 17 years ago by Andreas Bertsch <[email protected]>

fixed some things at the suffix array implementations, very experimental a.t.m.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2541 6adb6e08-d915-0410-9...

aa79a24bb2eb8a5501bbc7dfd8a55ab697961c1c authored almost 17 years ago by Andreas Bertsch <[email protected]>

added new model file

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2540 6adb6e08-d915-0410-9...

ac5bd3645ba828f38a5d93473a6b3b46247ec0d2 authored almost 17 years ago by Andreas Bertsch <[email protected]>

FeatureFinder: added check if peaks are sorted; FileFilter: added sorting option for output; FeatureFinderPickedPeak: minor runtime improvments; DSpectrum: added Method to find the peak nearest to a specific m/z value

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2539 6adb6e08-d915-0410-9...

0e3d2b47ef159619b14921172a4c53668052031a authored almost 17 years ago by Marc Sturm <[email protected]>

model updates

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2538 6adb6e08-d915-0410-9...

a7bb4229e1f7d4b86cddb03d9e9049b1c9f4f2b7 authored almost 17 years ago by Andreas Bertsch <[email protected]>

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2537 6adb6e08-d915-0410-941f-83917bcadc18

01ac419f6220de97600c56fb036a8b911e2cfe93 authored almost 17 years ago by Rene Hussong <[email protected]>

added TOPPView coloring option

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2536 6adb6e08-d915-0410-9...

01fbc4b1e46fa513beb98fc47f319b17bd4efca7 authored almost 17 years ago by Marc Sturm <[email protected]>

minor bug fixes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2535 6adb6e08-d915-0410-9...

a9b5392fa340b3d2f2b52bb6ff05369b71e9b9e8 authored almost 17 years ago by Marc Sturm <[email protected]>

changed default settings of 2D view

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2534 6adb6e08-d915-0410-9...

60311c0b2170eaa854b326a2eb1f08cebe111229 authored almost 17 years ago by Marc Sturm <[email protected]>

First version of picked peak FF

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2533 6adb6e08-d915-0410-9...

d55ad465bd84b3b2b8c59a5893986ab66d905ba8 authored almost 17 years ago by Marc Sturm <[email protected]>

dotdoc

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2532 6adb6e08-d915-0410-9...

c99477531fa493cc22b360d008f22eef070aac2c authored almost 17 years ago by Clemens Gröpl <[email protected]>

dotdoc

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2531 6adb6e08-d915-0410-9...

dce5aa654241750ed47e01da89cda94c8eb3070d authored almost 17 years ago by Clemens Gröpl <[email protected]>

dotdoc

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2530 6adb6e08-d915-0410-9...

0d7c6e2c8591f67841bbee7bfc8b3374d363c6fc authored almost 17 years ago by Clemens Gröpl <[email protected]>

added dotdoc - the full-blown, graphical (using the dot program), super-duper, internal documentation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2529 6adb6e08-d915-0410-9...

49b5d146ae854bd1a899c3bb2a7644c4b921a332 authored almost 17 years ago by Clemens Gröpl <[email protected]>

Fixed bug that caused TOPPView to forget layer visibilities when changing between different windows

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2528 6adb6e08-d915-0410-9...

e72231623348da7718f1c494d8a62c9886fe4b74 authored almost 17 years ago by Marc Sturm <[email protected]>

Added overall convex hull to Feature; minor interface changes to several classes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2526 6adb6e08-d915-0410-9...

63cb315d44299c34b13793d6f2e5a90997f3903b authored almost 17 years ago by Marc Sturm <[email protected]>

speed-up for the isotope wavelet

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2524 6adb6e08-d915-0410-9...

8bf01c78b7b37b62221da87350ed80446a24542c authored almost 17 years ago by Rene Hussong <[email protected]>

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2523 6adb6e08-d915-0410-941f-83917bcadc18

7c0a32b68374d30331de7b458d428323e276f838 authored almost 17 years ago by Rene Hussong <[email protected]>

Added metadata tests in ANDIFile_test.C

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2522 6adb6e08-d915-0410-9...

840384ffcaf0d3c298038ff738c93af38f2e47c5 authored almost 17 years ago by muschtafa <[email protected]>

added some more member declarations

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2521 6adb6e08-d915-0410-9...

bf21eff4e634c5d9fc201d9352a777f6230d66c5 authored almost 17 years ago by Andreas Bertsch <[email protected]>

Added overall feature convex hulls draw mode

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2520 6adb6e08-d915-0410-9...

bc8cf9dc5fb82ab65efa229b55db6c75a82724f5 authored almost 17 years ago by Marc Sturm <[email protected]>

added Icon support for Windows-Executables.

added a preliminary Icon for TOPPView.exe
other Icons can easily be included: see OpenMS/doc/html...

aa00096057080d6a89f4d2e2f303b6dc045085c5 authored almost 17 years ago by Chris Bielow <[email protected]>

replaced methods fseeko64 and ftello64 by fseek and ftell (unavailable under Mac OSX)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2516 6adb6e08-d915-0410-9...

8a0725340912221a3ece88761eb842da90bc19c9 authored almost 17 years ago by Marcel Grunert <[email protected]>

OpenMS -> %OpenMS

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2515 6adb6e08-d915-0410-9...

0a7b9ee2cdf18cf7c62ceafdd6bca79b75d93602 authored almost 17 years ago by Clemens Gröpl <[email protected]>

added a remark that exceptions should be caught by reference

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2514 6adb6e08-d915-0410-9...

69da08694efcb122eb447997ab42b62f48a16d52 authored almost 17 years ago by Clemens Gröpl <[email protected]>

changes in EmpiricalFormula

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2513 6adb6e08-d915-0410-9...

ab99ebe9d1bf7a4fb3e7fbdc5c23ec7fab29dc12 authored almost 17 years ago by Andreas Bertsch <[email protected]>

fixed some ugly things (thanks to Clemens)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2512 6adb6e08-d915-0410-9...

b83533e6bf50719de2cd267d0ff5a09d1a0383b9 authored almost 17 years ago by Andreas Bertsch <[email protected]>

ANDIFile update (better error handling and messages; more efficient); todo updates

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2511 6adb6e08-d915-0410-9...

55fd371b5500c7df7081f39d3d94d890f218042b authored almost 17 years ago by Marc Sturm <[email protected]>

bugfix of bugfix

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2510 6adb6e08-d915-0410-9...

ec896889bd2dc9688fdcd31ac11c4642d7c4ef8e authored almost 17 years ago by Andreas Bertsch <[email protected]>

fixed bug, were empty subsection are registered

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2509 6adb6e08-d915-0410-9...

a960526129888bd61a7ba3340812cba4e881e67d authored almost 17 years ago by Andreas Bertsch <[email protected]>

unabled SuffixArray testing (problems on different platforms)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2508 6adb6e08-d915-0410-9...

29f0af30dae712d58cc9fccd6d9061781a951ec9 authored almost 17 years ago by Andreas Bertsch <[email protected]>

cosmetic changes to TOPP tools under Windows

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2507 6adb6e08-d915-0410-9...

954da5e0f2ab41c93522b5f3700fcc35db93e619 authored almost 17 years ago by Chris Bielow <[email protected]>

fixed aclocal.m4 for MinGW (and partially for Darwin -untested)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2506 6adb6e08-d915-0410-9...

e034899666e64719a2eb6c0b86d9cf8dbb119eeb authored almost 17 years ago by Chris Bielow <[email protected]>

fixed bug were test failed on machines containing '_''s in the name... (thanks Eva)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2505 6adb6e08-d915-0410-9...

be4921c98f2a9b24ce28ddb610afec87d88086da authored almost 17 years ago by Andreas Bertsch <[email protected]>

Fixed bug in Qt handling of configure (when Qt is installed in /usr/); simplified the whole handling of qt options (QTDIR is only used in configure.ac; Real checking of Qt incl and libs is not performed even when they were explicitly given in the command line);

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2504 6adb6e08-d915-0410-9...

800e61551ae60ae7921d03d8fa0eee1026e96c90 authored almost 17 years ago by Marc Sturm <[email protected]>

- repaired configure for MinGW

- easier installation (see Tutorial)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/op...

6a3b3b79be4e29f722210aa245cd4d29c83dfaa9 authored almost 17 years ago by Chris Bielow <[email protected]>

fixed minor problem in FeatureFinder

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2502 6adb6e08-d915-0410-9...

85d6de1b0177b87a10894103901c4848a2ce5c2a authored almost 17 years ago by Marc Sturm <[email protected]>

Major update to configure (fixed several bugs in Qt, cleaned up)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2501 6adb6e08-d915-0410-9...

56c3f8588ea020cc040073f5aa5c62e851f708a4 authored almost 17 years ago by Marc Sturm <[email protected]>

update PILIS model; some things are to be done

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2500 6adb6e08-d915-0410-9...

0d7d99b9608a982d30b05d13749652416cacb54e authored almost 17 years ago by Andreas Bertsch <[email protected]>

Added MetaInfo to FeatureXML and FeaturePairsXML; added Visualization of Feature MetaInfo to TOPPView

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2499 6adb6e08-d915-0410-9...

b5737f56c30b7dc84b3ddf3fe70f5b02cc10d5be authored almost 17 years ago by Marc Sturm <[email protected]>

Minoar changes to TOPPView/ParamEditor

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2498 6adb6e08-d915-0410-9...

4cf1a574a5507728ac0fe50be30a98ab1f26adba authored almost 17 years ago by Marc Sturm <[email protected]>

fixed RTPredict test-files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2497 6adb6e08-d915-0410-9...

9574ac6e57062a9beb7d56b05c23645c44fc3d24 authored almost 17 years ago by NicoPfeifer <[email protected]>

small bugfix: new configure.ac did not work for linux... now it does..

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2496 6adb6e08-d915-0410-9...

b50d21dd6be2ff16e1f3c68ecc64546015a1d88d authored about 17 years ago by Chris Bielow <[email protected]>

Win Port further improved

- read win installation instructions!
- redo ./configure <myoptions>

not tested on Linux yet. D...

dfcb4d963e39f38ec362b6074ef4e99a8aab65ae authored about 17 years ago by Chris Bielow <[email protected]>

fixed bug in IdXMLFile; minor changes in XTandemXMLFile

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2494 6adb6e08-d915-0410-9...

2b48d483a95393a300f3bb5676459233d971f767 authored about 17 years ago by Andreas Bertsch <[email protected]>

minor changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2493 6adb6e08-d915-0410-9...

a2904fcd413793ba8ef664339951fa1868231e11 authored about 17 years ago by Andreas Bertsch <[email protected]>

fixed bug in PeptideIdentification were zero-sized hits_ are accessed; added missing setProteinAccession method to PeptideHit

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2492 6adb6e08-d915-0410-9...

1e99ef16aaf2e847dd4cebc5ec62e083093432dc authored about 17 years ago by Andreas Bertsch <[email protected]>

XTandem input file changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2491 6adb6e08-d915-0410-9...

ffe7c5c6cd38999c3af9b7e6be1aef0a1c3b995b authored about 17 years ago by Andreas Bertsch <[email protected]>

minor changes to FF

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2490 6adb6e08-d915-0410-9...

8d7a6c9b29d9a4ce94ca6c903f8266bf95eddc01 authored about 17 years ago by Marc Sturm <[email protected]>

- further improvements on win32 port

- execute "./configure <your-options>" to make it work
- not re-tested on Unix yet... it might cr...

f5157933d7ab5636aec77ac7b6899f4d265150f4 authored about 17 years ago by Chris Bielow <[email protected]>

minor changes related to FF

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2488 6adb6e08-d915-0410-9...

0527b7ccb103b4a92f3fd71df779f38968e0c273 authored about 17 years ago by Marc Sturm <[email protected]>

Corrected scoring function for isotope wavelet feature finder

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2487 6adb6e08-d915-0410-9...

c4d0bb6c2ae5312b50a010c42d6a1280a32ef187 authored about 17 years ago by Rene Hussong <[email protected]>

Rene: Adapted code to the OpenMS style conventions.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2486 6adb6e08-d915-0410-9...

a4843fcc57132b0e50a1b60eb72c5b2096f13fa6 authored about 17 years ago by Rene Hussong <[email protected]>

first, preliminary version of the isotope wavelet feature finder

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2485 6adb6e08-d915-0410-9...

76d7282a6c84f2928ec2df59d0afe6012803b4f6 authored about 17 years ago by Rene Hussong <[email protected]>

Additional algorithm to build probability ConsensusID

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2484 6adb6e08-d915-0410-9...

29af2d53b8313fe6d2781aa0d0a4ccd00baf56da authored about 17 years ago by Sven Nahnsen <[email protected]>

added some more options

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2483 6adb6e08-d915-0410-9...

87bc5a5794cf791b98d99caa05296b2b7180e783 authored about 17 years ago by Andreas Bertsch <[email protected]>

added decoy probability estimator; inoperable a t m

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2482 6adb6e08-d915-0410-9...

53cfea5930e435119422a067bd6076da9c0ac799 authored about 17 years ago by Andreas Bertsch <[email protected]>

added distribution fitters to Makefile

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2481 6adb6e08-d915-0410-9...

ac64273a786a7cb8ba94b6393b37b25f5083d441 authored about 17 years ago by Andreas Bertsch <[email protected]>

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2480 6adb6e08-d915-0410-941f-83917bcadc18

e6dbc6226a5c4853dc52da46a5202e320c26c8d4 authored about 17 years ago by Andreas Bertsch <[email protected]>

fixed yet another Makefile bug

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2479 6adb6e08-d915-0410-9...

276422d99a16cdab93b1bf51576e49e047572ef0 authored about 17 years ago by Andreas Bertsch <[email protected]>

added first versions of a gauss and gammadistribution fitters

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2478 6adb6e08-d915-0410-9...

a20be1df0dea1a95466aea0ac2cfbbd9ea8c5700 authored about 17 years ago by Andreas Bertsch <[email protected]>

fixed typo

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2477 6adb6e08-d915-0410-9...

90ab465ed6da7e3c11cf4e0561db30110dc0e414 authored about 17 years ago by Andreas Bertsch <[email protected]>

added means to change layer paramters

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2476 6adb6e08-d915-0410-9...

cc312b738207638bd0dd955710b2b2b857a1f353 authored about 17 years ago by Marc Sturm <[email protected]>