github.com/OpenMS/OpenMS commits | Ecosyste.ms: OpenCollective

improved performance of meta data filtering

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2703 6adb6e08-d915-0410-9...

f42f9bacda3afc8ba8a8a02a49c9916c8ac67784 authored over 16 years ago by Johannes Veit <[email protected]>

improved performance of meta data filtering

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2702 6adb6e08-d915-0410-9...

2f43222cbcd115f2ea0c629a412e03a11999385e authored over 16 years ago by Johannes Veit <[email protected]>

Fixed bug (non-existent properties)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2701 6adb6e08-d915-0410-9...

1bd363e3ea924c075698ef389221389420461b74 authored over 16 years ago by Marc Sturm <[email protected]>

FFPP: Removed some magic constants; changed some parameter names; feature intensity is based on model only now

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2700 6adb6e08-d915-0410-9...

055ba544c483652d189833ca755ba524c41a2bed authored over 16 years ago by Marc Sturm <[email protected]>

Update GoTo Dialogs; Added GoTo for feature numbers

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2699 6adb6e08-d915-0410-9...

bf007c3689bb1409f75c1bd422b7de467a3538d9 authored over 16 years ago by Marc Sturm <[email protected]>

FFPP: Improved intensity scoring (based on quantiles); minor other changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2698 6adb6e08-d915-0410-9...

93a5d70ae2704554eeb59d2322c3926f199550ce authored over 16 years ago by Marc Sturm <[email protected]>

fixed some errors

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2697 6adb6e08-d915-0410-9...

4320547efb2b1d581c5d7bd840855305a3c7332d authored over 16 years ago by Marcel Grunert <[email protected]>

added tests for new isotope model and fitter (optimization with Levenberg-Marquardt)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2696 6adb6e08-d915-0410-9...

35848b8697357a384d3c16ff28fa4e2acdecbd1a authored over 16 years ago by Marcel Grunert <[email protected]>

added tests for new isotope model and fitter (optimization with Levenberg-Marquardt)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2695 6adb6e08-d915-0410-9...

be95fa791576020341360e591407e7551d9761d9 authored over 16 years ago by Marcel Grunert <[email protected]>

added tests for new isotope model and fitter (optimization with Levenberg-Marquardt)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2694 6adb6e08-d915-0410-9...

0da3dadf7110ff98a1b48e5ec56f109b20c0dcdc authored over 16 years ago by Marcel Grunert <[email protected]>

fixed some errors and added new isotope model & fitter using Levenberg-Marquardt algorithm for parameter optimization

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2693 6adb6e08-d915-0410-9...

ab28044fa20ecb8b6050a8609ec82fb2d621e1f8 authored over 16 years ago by Marcel Grunert <[email protected]>

fixed some errors and added new isotope model & fitter using Levenberg-Marquardt algorithm for parameter optimization

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2692 6adb6e08-d915-0410-9...

ddf6bb83b866991c4e13f68435602bf8ac3fb501 authored over 16 years ago by Marcel Grunert <[email protected]>

added isotope model and fitter using Levenberg-Marquardt algorithm for parameter optimization

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2691 6adb6e08-d915-0410-9...

ed759fed38f75172bcfaca348dbb197245586368 authored over 16 years ago by Marcel Grunert <[email protected]>

added isotope model and fitter using Levenberg-Marquardt algorithm for parameter optimization

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2690 6adb6e08-d915-0410-9...

c9eaf79ffa0c005bc7c272bd55a42f1c50b1fbad authored over 16 years ago by Marcel Grunert <[email protected]>

minor doc changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2689 6adb6e08-d915-0410-9...

d37064d8aa77c1ba86ffd014cd478938870fc265 authored over 16 years ago by Johannes Veit <[email protected]>

added meta data filtering

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2688 6adb6e08-d915-0410-9...

4f076221691ea1c9de0381060c99b9130812684b authored over 16 years ago by Johannes Veit <[email protected]>

Faster and better trace scoring; progress during intensity scoring

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2687 6adb6e08-d915-0410-9...

957b209d18018f6cafe6c273a6222c3528502176 authored over 16 years ago by Marc Sturm <[email protected]>

Improved behaviour of DataFilterDialog; fixed bug in TOPPView that caused it to crash when changing the active layer

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2686 6adb6e08-d915-0410-9...

21954dfb6241246c694b2a51aee5e2a604b63415 authored over 16 years ago by Marc Sturm <[email protected]>

Improvements to PPFF; minor changed to other classes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2685 6adb6e08-d915-0410-9...

73114c4b2e0452371a8c9208212ade9a434a6d40 authored over 16 years ago by Marc Sturm <[email protected]>

fixed checker errors; improved gnuplot output

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2684 6adb6e08-d915-0410-9...

469092e8c65a00cb55b7d3c4206f64dd077ef3c9 authored over 16 years ago by Marc Sturm <[email protected]>

Fixed many checker errors; Updated Kernel,Datastructures and Math to OpenMS type definitions; Added methods for Real/UInt to DataValue, Param, MetaInfo and MetainfoInterface; change to FFPP

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2683 6adb6e08-d915-0410-9...

814c13ce41aaf1c748a42e403ff39e8b8e4d80c4 authored over 16 years ago by Marc Sturm <[email protected]>

fix windows bug when extending swap file

-- prepare for external memory as default

git-svn-id: https://open-ms.svn.sourceforge.net/svnroo...

d6635bc37ec92804a70d0a20c58562870fda40fd authored over 16 years ago by Chris Bielow <[email protected]>

enable dynamic linking for MinGW (currently needs to be invoked actively via "make install.shared" though)

-- please check Factory_test.C as it fails with dynamic linking!

git-svn-id: https://open-ms.svn...

bc13328fa5adf8d73d39f56a9a39b5d0717955e0 authored over 16 years ago by Chris Bielow <[email protected]>

Added cropping of features according to first fit

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2679 6adb6e08-d915-0410-9...

501c4d7c45973975a3290c04e872deff96d84973 authored over 16 years ago by Marc Sturm <[email protected]>

Simplified extendMassTrace_; added correlation as quality measure for mass traces

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2677 6adb6e08-d915-0410-9...

a87a56330962dd474cdafefca27d7bbc1a1c3036 authored over 16 years ago by Marc Sturm <[email protected]>

removed IWASHERE

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2676 6adb6e08-d915-0410-9...

d05e3c28da0f83708f4c2c198acd51917c911f36 authored over 16 years ago by Marc Sturm <[email protected]>

bugfix for windows swap file

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2675 6adb6e08-d915-0410-9...

36b6d6b5c944fbdd6b1055eb2669b4f0f4fad3a1 authored over 16 years ago by Chris Bielow <[email protected]>

update for isotope wavelet ff

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2674 6adb6e08-d915-0410-9...

dc37ce5a04d9737fe73de316dafb624dbc422314 authored over 16 years ago by Rene Hussong <[email protected]>

minor code and docu changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2673 6adb6e08-d915-0410-9...

8120e3c08c4482c9d5de4708f465ee98d98b36b4 authored over 16 years ago by Marc Sturm <[email protected]>

minor code and docu changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2672 6adb6e08-d915-0410-9...

5308ef0493d45b2e097e3ae3884aa932201dc044 authored over 16 years ago by Marc Sturm <[email protected]>

fixed peak coloring of different intensity modes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2671 6adb6e08-d915-0410-9...

a0e1bda8a5445506a1596def77cbee3c659024a3 authored over 16 years ago by muschtafa <[email protected]>

Added DataFilter concept; Added check if a test actually tests anything; removed Param inheritence

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2670 6adb6e08-d915-0410-...

90a6fad8e00c079cea2606650830bb602a137b7a authored over 16 years ago by Marc Sturm <[email protected]>

Added advanced parameter handling to DefaultParamHandlerDocumenter; changes to 3D view due to Qt 4.3 implementation of renderText(x,y,z,...); minor other changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2669 6adb6e08-d915-0410-9...

6c2a7fd328f62ecfaa4738d5c30de0fa42e60249 authored almost 17 years ago by Marc Sturm <[email protected]>

require at least GCC 3.4.5

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2668 6adb6e08-d915-0410-9...

7f7621b937524e033864865ef6fd1ca2d2c0d076 authored almost 17 years ago by Chris Bielow <[email protected]>

Updated README; Documentation can be build without an OpenMS installation now.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2667 6adb6e08-d915-0410-9...

9812fd1a9939de73977baa8871a7b2299e112f77 authored almost 17 years ago by Marc Sturm <[email protected]>

reverted big swap file created due to problems with ReiserFS and HSF+

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2666 6adb6e08-d915-0410-9...

6393db512dfddc63aa6e5228016b8ca164afd202 authored almost 17 years ago by Chris Bielow <[email protected]>

Added generic filter concept to view classes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2665 6adb6e08-d915-0410-9...

17838ab8926dd7acab55baa58212a50d213c54cb authored almost 17 years ago by Marc Sturm <[email protected]>

minor update to 3D view

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2662 6adb6e08-d915-0410-9...

0f11be751964bba1a865215c875beb13c10a94fb authored almost 17 years ago by Marc Sturm <[email protected]>

SpectrumCanvas: disabled axis signals when updating them -> fixed bug in 2d view that caused strange zooming + improved performance

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2661 6adb6e08-d915-0410-9...

d15a1b5c8809ac2f8c01180a67922b1c2e0418e2 authored almost 17 years ago by Marc Sturm <[email protected]>

Some improvments to 3D view

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2660 6adb6e08-d915-0410-9...

4aedd2ebf66d9464d06f1da0e3621ffe86bf060c authored almost 17 years ago by Marc Sturm <[email protected]>

In debug mode: write all consensus features to MapAlignment_merged.dat.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2659 6adb6e08-d915-0410-...

93956fdc55e3d89c761336e5824c46385b12b6dd authored almost 17 years ago by Eva Lange <[email protected]>

bugfix removing warning and fixing a test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2658 6adb6e08-d915-0410-9...

fa0a321660456b8434444f03365d2a60d5e34ba0 authored almost 17 years ago by Chris Bielow <[email protected]>

Changed layer name of layer created by TOPP tools; Moved layer renaming to context menu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2657 6adb6e08-d915-0410-9...

21efc99d7db5acc2ee3de9f1b2c3ff3d82e4f3e4 authored almost 17 years ago by Marc Sturm <[email protected]>

- fixed bug in Makefile which caused make to fail on --disable-NETCDF

- blindly fixed 32-bit library failure
- fixed some warnings on 2 Tests

git-svn-id: https://open...

5cf804b471fc99376dc9af789d0643025caceb8b authored almost 17 years ago by Chris Bielow <[email protected]>

Rotating Colors in 1D View

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2655 6adb6e08-d915-0410-9...

897c7f3a9d02397700a093fcaaa7069dd693d3e9 authored almost 17 years ago by Marc Sturm <[email protected]>

Added comments; latest version of FFPP

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2654 6adb6e08-d915-0410-9...

5d10a8de68ac9eb2f6c5266edc04c9f61d20bfbb authored almost 17 years ago by Marc Sturm <[email protected]>

Implemented isotope estimation according to Averagine model

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2653 6adb6e08-d915-0410-9...

0ccec53290e761ba66ae49efd4aacdf3ee6f9e3e authored almost 17 years ago by Marc Sturm <[email protected]>

tests for external allocator

minor fixes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2652 6adb6e08...

5bd139e047cd06057f5eb2deb74cc95629769e3c authored almost 17 years ago by Chris Bielow <[email protected]>

added missing separator

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2651 6adb6e08-d915-0410-9...

6698c734bb3a9193ca7e98e9c6bb78c7299c2b36 authored almost 17 years ago by Marcel Grunert <[email protected]>

added new tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2650 6adb6e08-d915-0410-9...

71e221bd731f70d4f4fdbf7c7ad6d0999c619fe1 authored almost 17 years ago by Marcel Grunert <[email protected]>

added some test methods

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2649 6adb6e08-d915-0410-9...

0468e5c5578dd6cd924b2ea81b97b315aa42181f authored almost 17 years ago by Marcel Grunert <[email protected]>

added some test methods

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2648 6adb6e08-d915-0410-9...

b86bf5105ab001bb03a5df18685d9d8a05ef75c8 authored almost 17 years ago by Marcel Grunert <[email protected]>

added some test methods

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2647 6adb6e08-d915-0410-9...

c3ec69f8bf87bd0e05b5c36e3bf0268a717f9cc0 authored almost 17 years ago by Marcel Grunert <[email protected]>

added some test methods

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2646 6adb6e08-d915-0410-9...

8265abcf24ab2f76c8c959a8aae87b958e036b45 authored almost 17 years ago by Marcel Grunert <[email protected]>

added some tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2645 6adb6e08-d915-0410-9...

e31fd5594556f9fc2ba4f9df8906e82c78c8cda4 authored almost 17 years ago by Marcel Grunert <[email protected]>

Minor fixes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2644 6adb6e08-d915-0410-9...

1ab2409f84a58c55afe062ad6e25f212022f5188 authored almost 17 years ago by Marc Sturm <[email protected]>

added some tests in conjunction with model fitting

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2642 6adb6e08-d915-0410-9...

ae87fdfeb29fe59eb0f7c09347c2a553b14eb95b authored almost 17 years ago by Marcel Grunert <[email protected]>

removed old FF components

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2641 6adb6e08-d915-0410-9...

52d507327a651d1830e8119bbd851b289f42c555 authored almost 17 years ago by Marcel Grunert <[email protected]>

removed old FF components

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2640 6adb6e08-d915-0410-9...

ed736ba37f477279eb20d3313f0954c128d8b655 authored almost 17 years ago by Marcel Grunert <[email protected]>

removed old FF components

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2639 6adb6e08-d915-0410-9...

85ffa32d44316341a525d52bcaf47c4f181c4aa3 authored almost 17 years ago by Marcel Grunert <[email protected]>

removed old FF components

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2638 6adb6e08-d915-0410-9...

018ad2149441c62065f15dbb2ad266bf93a13334 authored almost 17 years ago by Marcel Grunert <[email protected]>

removed old FF components

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2637 6adb6e08-d915-0410-9...

13ed0b668590fbac5c75106f08170da25927c873 authored almost 17 years ago by Marcel Grunert <[email protected]>

- fixed bug in config.h.in which prevents usage of C99 datatypes

- fixed types.h
- added new offset type for large files to types.h

git-svn-id: https://open-ms.s...

9f98b076a77852c7fbcce0731696d1d44f147d3d authored almost 17 years ago by Chris Bielow <[email protected]>

changed parameter settings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2635 6adb6e08-d915-0410-9...

30b00f10338f81f6d5787dc93c349fcb5ce5a7fb authored almost 17 years ago by Marcel Grunert <[email protected]>

changed parameter names

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2634 6adb6e08-d915-0410-9...

3e6f80cc8f51c8bb0a20b984ab35bc31ece5a333 authored almost 17 years ago by Marcel Grunert <[email protected]>

changed parameter names

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2633 6adb6e08-d915-0410-9...

6b86967abb244ab270c73c5553485ace6759fc5c authored almost 17 years ago by Marcel Grunert <[email protected]>

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@2632 6adb6e08-d915-0410-941f-83917bcadc18

0b43547610e983fc00a357c65098657861723f31 authored almost 17 years ago by Marcel Grunert <[email protected]>