github.com/OpenMS/OpenMS commits | Ecosyste.ms: OpenCollective

New interface for BaseSuperimposer

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3147 6adb6e08-d915-0410-9...

1bc3b895e7d3f329bc94405cba750cdc6154b98d authored over 16 years ago by Marc Sturm <[email protected]>

switched off debug output

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3146 6adb6e08-d915-0410-9...

0abf8a06d58f63bf13c5e90cac76aaf91f2c2255 authored over 16 years ago by Clemens Gröpl <[email protected]>

slight changes in output format

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3145 6adb6e08-d915-0410-9...

ac3a8e355b4c8f188454f957285e34a232fa9073 authored over 16 years ago by Clemens Gröpl <[email protected]>

Updated ConsensusXML schema version; Fixed algorithms used in MapAlignmentAlgorithmPoseClustering; docu changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3144 6adb6e08-d915-0410-9...

519a2fd88a81730670bbd180f4c4e39cdd384673 authored over 16 years ago by Marc Sturm <[email protected]>

computeInterceptXAxis renamed to computeRegression

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3143 6adb6e08-d915-0410-9...

c2df15f23ac6587ba4169d13035e6de36beda515 authored over 16 years ago by Clemens Gröpl <[email protected]>

Refurbished ConsensusMap and ConsensusFeature

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3142 6adb6e08-d915-0410-9...

ccc56d2e732791a3de895df3c7e0dd1278f1d7b2 authored over 16 years ago by Marc Sturm <[email protected]>

unlabeled FeatureLinker

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3141 6adb6e08-d915-0410-9...

2cbcb4b127e2d480341aa2331a56a958d61c59a6 authored over 16 years ago by Clemens Gröpl <[email protected]>

FeatureLinker_test section 2 and 3, for unlabeled data

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3140 6adb6e08-d915-0410-9...

87e8a7eabe32cd7abce2d5a6b460ea5e441ce45b authored over 16 years ago by Clemens Gröpl <[email protected]>

data for FeatureLinker test section 2 and 3 (unlabeled)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3139 6adb6e08-d915-0410-9...

48cdc2755eb8db9f0979d28eaaddffd0501547c6 authored over 16 years ago by Clemens Gröpl <[email protected]>

install FuzzyDiff in OpenMS/bin

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3138 6adb6e08-d915-0410-...

f88dbd6acc93dc7783dfbbcbf7ecb45d00ddcd07 authored over 16 years ago by Clemens Gröpl <[email protected]>

refurbished Group, IndexTuple, ElementPair

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3137 6adb6e08-d915-0410-9...

66b3bf8c8e36eac895026a40962db7ceac438c3c authored over 16 years ago by Clemens Gröpl <[email protected]>

Added an "unwindowsify" target to remove artifacts resulting from editing in a MS Windows environment

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3136 6adb6e08-d915-0410-...

9c97fa1c56f375bbfac5c2d80592a744093bb71e authored over 16 years ago by Clemens Gröpl <[email protected]>

worked on FeatureLinker (unlabeled) + general cleanup: dos2unix, svn propdel svn:executable

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3135 6adb6e08-d915-0410-9...

42bd576ba34a60ded6717216a7fd1915891ce846 authored over 16 years ago by Clemens Gröpl <[email protected]>

Removed PairwiseMapMatchers

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3134 6adb6e08-d915-0410-9...

8d936fb404cdf203191d927c7792f94f9f8ddc0a authored over 16 years ago by Marc Sturm <[email protected]>

Replaced most occurances of DPeakConstReferenceArray

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3133 6adb6e08-d915-0410-9...

fb3d1d31e9153b33e04f2d7732708f7982948aed authored over 16 years ago by Marc Sturm <[email protected]>

Removed TOPP tools: UnlabledMatcher, LabeledMatcher; ConsensusMap: removed map pointer array

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3132 6adb6e08-d915-0410-9...

a99d813a96e379f8d33a532cdb91d3d25b0802ea authored over 16 years ago by Marc Sturm <[email protected]>

Moved UnlabeledMatcher to FeatureLinker

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3131 6adb6e08-d915-0410-9...

c6f851956748b7bb0a6b091f9a3fe04d5c78dcf9 authored over 16 years ago by Marc Sturm <[email protected]>

dos2unix

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3130 6adb6e08-d915-0410-9...

feb35d1f6e78e86dc6a0eeab72c821fe51213202 authored over 16 years ago by Clemens Gröpl <[email protected]>

Removed unneeded members

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3129 6adb6e08-d915-0410-9...

e2f9148439c8ce1ce79f25045667b002c3b6179c authored over 16 years ago by Marc Sturm <[email protected]>

commented out, needs full rewrite

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3128 6adb6e08-d915-0410-9...

758526a673f074d56818adc3fd0999ec5e3cbb80 authored over 16 years ago by Clemens Gröpl <[email protected]>

dotdoc

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3127 6adb6e08-d915-0410-9...

b0e4f90c36c0cf71a7acc86f5213a2674d15a5ca authored over 16 years ago by Clemens Gröpl <[email protected]>

documentation changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3126 6adb6e08-d915-0410-9...

51f86e34c48a3db3316a91ae1222a72f61e41911 authored over 16 years ago by Marc Sturm <[email protected]>

Removed classes: BaseAlignment, StarAlignment, BaseMapMatcher, MapMatcherRegression, MapDewarper; Removed TOPP tools: MapDewarper,MapMatcher,FeaturePairSplitter

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3125 6adb6e08-d915-0410-9...

450ed104e9808c5502ee8ffba211f2b5dbb248d3 authored over 16 years ago by Marc Sturm <[email protected]>

Map alignment workshop day2: replaced MapAlignment by MapAligner; changed implementation of IndexTuple; changed interface of ConsensusXMLFile

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3123 6adb6e08-d915-0410-9...

7d22de11838898513338e9e5a816526cfb1f5426 authored over 16 years ago by Marc Sturm <[email protected]>

changed dates in Date_test because some medieval ones (like 888-01-02 and especially 0888-01-02) cause problems on Qt 4.4

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3122 6adb6e08-d915-0410-9...

747db9ab09a488f33f96ab1d960c2a79b6c5c6b6 authored over 16 years ago by Johannes Veit <[email protected]>

Added FeatureLinker and FeatureGroupingAlgorithm

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3120 6adb6e08-d915-0410-9...

3096b523f81af64da3c3f898e14cb0e2203ad4a4 authored over 16 years ago by Marc Sturm <[email protected]>

forgot this in last map alignment checkin

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3119 6adb6e08-d915-0410-9...

a06419c25422ae65ac5260b14787e103874d2db8 authored over 16 years ago by Clemens Gröpl <[email protected]>

MapAlignment workshop day 1: Removed Grid, GridCell, GridFile, GridFileHandler; Added pose clustering map alignment algorithm

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3118 6adb6e08-d915-0410-9...

413a47c11b73150e753bf49a295edd1f90f8e8a0 authored over 16 years ago by Marc Sturm <[email protected]>

Pose clustering integrated into MapAlignment2

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3116 6adb6e08-d915-0410-9...

9cd6d69dde23f4a4a009e6ee3583515c3c1d4b10 authored over 16 years ago by Marc Sturm <[email protected]>

Changed TOPPView interface completely

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3113 6adb6e08-d915-0410-9...

8935235372e5545900720477533c02a3aa72b5b5 authored over 16 years ago by Marc Sturm <[email protected]>

added check for NaN return value

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3112 6adb6e08-d915-0410-9...

43ef3a3bf818ddca3dc90fdbde905dea29a77594 authored over 16 years ago by Marcel Grunert <[email protected]>

todo changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3109 6adb6e08-d915-0410-9...

b555cc514f2bd3f63f7b5b960ccccd38b6c4fca2 authored over 16 years ago by Marc Sturm <[email protected]>

PepXML support for modification positions

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3108 6adb6e08-d915-0410-9...

35f8499e5470243acc533be073f7f4183c43c745 authored over 16 years ago by NicoPfeifer <[email protected]>

FeatureMap: updateRanges() now includes the convex hulls; TOPPView: TOPP exection now stores the layer name the tool was applied to correctly

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3105 6adb6e08-d915-0410-9...

b5079c4bc8de1557261bc66c5000d1b02dfe219d authored over 16 years ago by Marc Sturm <[email protected]>

added TwoDOptimization TOPP test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3102 6adb6e08-d915-0410-9...

238c8a647be3399751a460fb4a5708ec92b3b518 authored over 16 years ago by Alexandra Zerck <[email protected]>

TOPPBase: empty log files are removed after exection now; minor docu changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3100 6adb6e08-d915-0410-9...

4292e792c0a3a6fc9b3c7e595ba8d886002c4689 authored over 16 years ago by Marc Sturm <[email protected]>

improved OMSSAXML implementation; should now handle m/z and rt correctly

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3098 6adb6e08-d915-0410-9...

0ba812f91e39dff46361504a4e28658ccb405a07 authored over 16 years ago by Andreas Bertsch <[email protected]>

next step to Modifications/Residue framework

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3097 6adb6e08-d915-0410-9...

13298ee7989d580b38c1e797a0b06a70771a6559 authored over 16 years ago by Andreas Bertsch <[email protected]>

Fixed bug that prevented loading of 'typed' INI files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3096 6adb6e08-d915-0410-9...

0d09be2d479761bd8e50f82635d476942ebf82b8 authored over 16 years ago by Marc Sturm <[email protected]>

TOPView: execution of TOPP tools uses a unique name now -> No update if file changed, now several TOPPView instances do not infuence each other; temporary files from the TOPP execution are no longer added to the recent files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3095 6adb6e08-d915-0410-9...

7057e144a518991286f32f32293526cd34d8337f authored over 16 years ago by Marc Sturm <[email protected]>

fixed small bug in DBAdapter, fixed DBAdapter test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3094 6adb6e08-d915-0410-9...

279496aa25d17a11be4dc2f6345be34702790a2f authored over 16 years ago by Johannes Veit <[email protected]>

Fixed bug that caused TOPPView to hang, when closing a window: Solution rewritten the whole tab handling

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3093 6adb6e08-d915-0410-9...

9b9a9abed08dc950f65eefe98f4c1d7e17447780 authored over 16 years ago by Marc Sturm <[email protected]>

added 'depend_strip' make target

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3092 6adb6e08-d915-0410-9...

045eefcadbeeaaa5c14f9feb0a67a05a5acdbc78 authored over 16 years ago by Marc Sturm <[email protected]>

fixed test and compiler errors

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3091 6adb6e08-d915-0410-9...

fcc1f18312e98a5f85473fdb64b8ea47c4fcfc17 authored over 16 years ago by Alexandra Zerck <[email protected]>

some minor changes at modifications framework

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3090 6adb6e08-d915-0410-9...

ed7a80db208cb12398031b7c6b62c7e76263ef43 authored over 16 years ago by Andreas Bertsch <[email protected]>

docu changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3089 6adb6e08-d915-0410-9...

56d118e10306f446045b995cae57a94b1f700745 authored over 16 years ago by Marc Sturm <[email protected]>

Fixed bug with Param schema version and updated required Qt version to 4.3

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3087 6adb6e08-d915-0410-9...

0b849cabd5729a56522de65e6bb4f9e7965f393b authored over 16 years ago by Marc Sturm <[email protected]>

Fixed bugs 1953335 and 1953339

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3083 6adb6e08-d915-0410-9...

17e6a77666d1efa78ca6533a41c65ebbca5637fe authored over 16 years ago by Marc Sturm <[email protected]>

File: interface imrovements; Param: added storing of string lists; String: added simplify; FileHandler: added Param and loadFeatures; TOPP Makefile: fixed dependencies error; SpectrumCanvas + co: rewritten zoom stack, rewritten mouse and keyboard events, layers are now updated when the file changes; Multigradient: added default gradients; class tests: temporary files with file types known to FileHandler are now automatically validated after the test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3082 6adb6e08-d915-0410-...

40a095a66620b705ec3f5b7e3ff3228c492b725e authored over 16 years ago by Marc Sturm <[email protected]>

added some more options to Zhang and Spectrum alignment scores; gaussian factors need to be implemented

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3080 6adb6e08-d915-0410-9...

e514b1cf5868385e71e95734097ea4fe7137bece authored over 16 years ago by Andreas Bertsch <[email protected]>

Implemented new handling of MetaInfoDescription / MetaDataArrays in DBAdapter, updated SQL schema.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3077 6adb6e08-d915-0410-9...

9bb8fa8c3f81c25e50c961607aad4f06223f428f authored over 16 years ago by Johannes Veit <[email protected]>

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3076 6adb6e08-d915-0410-941f-83917bcadc18

6e2aacf99c6466f660fa66f99652b8688f8bab38 authored over 16 years ago by Andreas Bertsch <[email protected]>

added m/z peak width dependency for GaussFilter

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3075 6adb6e08-d915-0410-9...

b3e4427c259916ac553d22d82a9b4265a7624d0b authored over 16 years ago by Andreas Bertsch <[email protected]>

removed OMSSA XML handler; implementation is now united in OMSSAXMLFile (both, file adapter and xml handler)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3074 6adb6e08-d915-0410-9...

8696c138a69428b90201624d635cdc7d36255a55 authored over 16 years ago by Andreas Bertsch <[email protected]>

use of MetaDataArrays and fixed test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3073 6adb6e08-d915-0410-9...

7d76b0f68ef7a10e89bc4faa5eb64b575873d095 authored over 16 years ago by Alexandra Zerck <[email protected]>

added doc to the create method; the string list item are not trimmed

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3072 6adb6e08-d915-0410-9...

eb657685cdfbbf960c43efe51a904d1438576eaa authored over 16 years ago by Andreas Bertsch <[email protected]>

minor change to LayerStatisticsDialog

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3071 6adb6e08-d915-0410-9...

f04d10888fbd4e763a01c5e2b9885ea712f13d9e authored over 16 years ago by Johannes Veit <[email protected]>

added test for FF

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3070 6adb6e08-d915-0410-9...

5b6efe23ca1ce89971bfb4bf83f38f1a87356a18 authored over 16 years ago by Marcel Grunert <[email protected]>

added and changed TOPPtest for FF

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3069 6adb6e08-d915-0410-9...

5ee399e948ae4910e506c64ea7ef62b47de87608 authored over 16 years ago by Marcel Grunert <[email protected]>

added test for FFAlgorithmWavelet

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3068 6adb6e08-d915-0410-9...

67f6f028bb0bbb466b2d6f14d294fb4f05247966 authored over 16 years ago by Marcel Grunert <[email protected]>

removed some unnecessary parameter

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3067 6adb6e08-d915-0410-9...

a2b0f42b293b22be11180ae87c32d89419792c14 authored over 16 years ago by Marcel Grunert <[email protected]>

removed intensity parameter and added signal-to-noise estimator

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3066 6adb6e08-d915-0410-9...

ec97af15f1a542d06f2cadc1a73175f43bfb2ccf authored over 16 years ago by Marcel Grunert <[email protected]>

changed default parameter and checked convex hull whether m/z is contained or not

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3065 6adb6e08-d915-0410-9...

530c3976eeba74238d98625b8e8b71c0ed0d5ce6 authored over 16 years ago by Marcel Grunert <[email protected]>

typo

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3063 6adb6e08-d915-0410-9...

9b22caedefdf4c2e069b2f49473ef0355e03dd5e authored over 16 years ago by Chris Bielow <[email protected]>

Included more search parameters from MascotXML

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3062 6adb6e08-d915-0410-9...

c2091a1f8312a9532fe8486fd3496e5e148c8024 authored over 16 years ago by NicoPfeifer <[email protected]>

removed invalid memory reads within isotope wavelet transform

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3061 6adb6e08-d915-0410-9...

7d74144e85d9cabf983d7e9216abbb415ae1afc7 authored over 16 years ago by Rene Hussong <[email protected]>

FAQ update

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3060 6adb6e08-d915-0410-9...

07d32930c93b187d1d35564c420db1057d3dc40e authored over 16 years ago by Chris Bielow <[email protected]>

Fixed Bug: 1948699

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3059 6adb6e08-d915-0410-9...

403db8c9a2709f25c33b1300e86fd446156a889d authored over 16 years ago by Chris Bielow <[email protected]>

Fixed warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3058 6adb6e08-d915-0410-9...

fb5b290b96216bb1469e6ec21ca9028059aebe84 authored over 16 years ago by Marc Sturm <[email protected]>

TOPPView: fixed bug (tabs were not updated when changing between tabs using CTRL+TAB

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3057 6adb6e08-d915-0410-9...

5501304c944ac0d376d46ad509decef950228e0c authored over 16 years ago by Marc Sturm <[email protected]>

Added statistics for MetaDataArrays of DSpectrum to LayerStatisticsDialog

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3055 6adb6e08-d915-0410-9...

3c9296fe5f2fd17d2d7506e4bfe18383046c2cda authored over 16 years ago by Johannes Veit <[email protected]>

Fixed bug 1948080

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3054 6adb6e08-d915-0410-9...

7ac279bfc20d3c4f9d26e33ee5314890bbaf24c8 authored over 16 years ago by NicoPfeifer <[email protected]>

typo

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3053 6adb6e08-d915-0410-9...

65f771cb7c842843e22a0c1ada64bde0537d6740 authored over 16 years ago by Chris Bielow <[email protected]>

TOPPView: Added peak meta info to status message; docu changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3052 6adb6e08-d915-0410-9...

dbecfa5ce843b442e82b0921d5439946ab2e0aaa authored over 16 years ago by Marc Sturm <[email protected]>

Added PeakIndex; Spectrum2DCanvas uses PeakIndex for selecting and measuring now

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3051 6adb6e08-d915-0410-9...

561a8e20e3bc17e61011a8c2011bbca52c557569 authored over 16 years ago by Marc Sturm <[email protected]>

Changed handling of MetaInfoDescription in MzData, MSMetaDataExplorer and TOPPView: MetaInfoDescription is now part of the meta data array directly in DSpectrum

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3050 6adb6e08-d915-0410-9...

5893dc2f158ba23b81ade24e0f2081f8cbe3f293 authored over 16 years ago by Marc Sturm <[email protected]>

added various debugging options

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3049 6adb6e08-d915-0410-9...

4f3283c8f9d2eac7e7f200abb167185cf053ec91 authored over 16 years ago by Andreas Bertsch <[email protected]>

Removed unneeded default template arguments; added docu ot meta data arrays to OpenMS tutorial

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3048 6adb6e08-d915-0410-9...

4fc41dd434d484e3010669600d128f5f4356e183 authored over 16 years ago by Marc Sturm <[email protected]>

Fixed problem with missing byteOrder and PairOrder attributes in peaks tag

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3047 6adb6e08-d915-0410-9...

0d4d019e042d8af4752c855a49b710acdb4ea509 authored over 16 years ago by Marc Sturm <[email protected]>

Removed PickedPeak1D; TODO: fix 2DOptimization

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3046 6adb6e08-d915-0410-9...

a3dde72f341bf7f05a65285bd9f20e48a0e616c7 authored over 16 years ago by Marc Sturm <[email protected]>

added check for convex hull

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3043 6adb6e08-d915-0410-9...

94d9f3e3bece473a1b176c0957ffa8d3103746cf authored over 16 years ago by Marcel Grunert <[email protected]>

modifications support changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3042 6adb6e08-d915-0410-9...

f2e68da20925b09d37db275de260e3400ebae1b9 authored over 16 years ago by Andreas Bertsch <[email protected]>

prepared for handling of modifications

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3041 6adb6e08-d915-0410-9...

37f1720b2cac1827f28c71b9fc72824fb44c008a authored over 16 years ago by Andreas Bertsch <[email protected]>

fixed bug if all protein hits where filtered

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3040 6adb6e08-d915-0410-9...

6f957b59c4a1b5666373c6044ee6a41f66c888a3 authored over 16 years ago by Andreas Bertsch <[email protected]>

Added MetaInfoArray infrastructure; Cleaned up peak shape; TODO remove PickedPeak1D

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3039 6adb6e08-d915-0410-9...

161dcacf457137afb8254d1743b1c5c0af1af31d authored over 16 years ago by Marc Sturm <[email protected]>

changed extension and debug output

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3037 6adb6e08-d915-0410-9...

30a13a2bc1527945a38684c4bdccfc7a8c248c17 authored over 16 years ago by Marcel Grunert <[email protected]>

Replaced HashMap by Map (based on STL map)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3036 6adb6e08-d915-0410-9...

a4f3483f95dd6d6edfa1fed6091a6b019b6bae26 authored over 16 years ago by Marc Sturm <[email protected]>

Removed all my throw declarations

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3035 6adb6e08-d915-0410-9...

61dbd32e9057f5aaf7f8781a9fc5e53ef5451e59 authored over 16 years ago by Marc Sturm <[email protected]>

Removed 'make bench'

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3033 6adb6e08-d915-0410-9...

9e1f4d31046ed3089d295c8fd7ecfd1aa67552ce authored over 16 years ago by Marc Sturm <[email protected]>

Docu changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3031 6adb6e08-d915-0410-9...

ce722c2bdd69bc4ed25a909ec615fb530c77e5c9 authored over 16 years ago by Marc Sturm <[email protected]>

Docu changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3030 6adb6e08-d915-0410-9...

a9ea706e814a76a415f57b619df600298638daa9 authored over 16 years ago by Marc Sturm <[email protected]>

Added first draft of new map-alignment infrastructure

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3029 6adb6e08-d915-0410-9...

fe1a158a1022a1287ba51f39a332f6757a88847e authored over 16 years ago by Marc Sturm <[email protected]>

FileHandler: added getType method; made some methods static

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3024 6adb6e08-d915-0410-9...

a856bd498205ecd1520256e14527d215adbb29e0 authored over 16 years ago by Marc Sturm <[email protected]>

Removed empty throw declarations

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3022 6adb6e08-d915-0410-9...

6ac88e025f7f907ea21a0ce7bf5649e42f56e04a authored over 16 years ago by Marc Sturm <[email protected]>

Replaced maintainers Bauer and Langwisch; DataValue: added toBool method; TOPPBase: Flags are stored as 'true'/'false' strings now; docu changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3021 6adb6e08-d915-0410-9...

bfe23fea60834a471475a9384b6a75938b849d35 authored over 16 years ago by Marc Sturm <[email protected]>

Dummy commit to add the Oberjoch april 2008 changelog

***********************************************************
r91 | marc | 2008-04-10 23:31:39 +02...

c3ef4ffa7d91d006bb16a1c1136f8d70fe7af74e authored over 16 years ago by Marc Sturm <[email protected]>

OpenMS retreat april 2008 checkin

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3018 6adb6e08-d915-0410-9...

6b289a76541eb1e779cd36b5c8ef9e2d15112570 authored over 16 years ago by Marc Sturm <[email protected]>

propdel svn:executable

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3016 6adb6e08-d915-0410-9...

64883d426553ab59c65e422b32b70041f262a270 authored over 16 years ago by Clemens Gröpl <[email protected]>

Corrected RT quality bug.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3015 6adb6e08-d915-0410-...

a93f06b24d2c09cb3772de112afb226c777d1bdf authored over 16 years ago by Ole Schulz-Trieglaff <[email protected]>

Added FAQ item

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3014 6adb6e08-d915-0410-9...

4ce37237c01fdf1a024377e56aed55dab66b3ddd authored over 16 years ago by Marc Sturm <[email protected]>