github.com/OpenMS/OpenMS commits | Ecosyste.ms: OpenCollective

TOPPView: updated drag-and-drop

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3374 6adb6e08-d915-0410-9...

240abc9f64aba8c1006746292b3ded757de325d1 authored over 16 years ago by Marc Sturm <[email protected]>

updated changelog; TOPPView: added drag and drop for layers (to tabbar); Spectrum2DWidget: auto-update of projections enabled by default

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3373 6adb6e08-d915-0410-9...

c076bd342c637ba2cf269c1842adde87979c1d3b authored over 16 years ago by Marc Sturm <[email protected]>

bugfixes,add doc, add test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3372 6adb6e08-d915-0410-9...

a1201c8d64dd24fa47133065a34afa775174be0f authored over 16 years ago by Vipul Patel <[email protected]>

TOPPView fixed focusing problems (?)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3371 6adb6e08-d915-0410-9...

fafb4418a643ce0e6c96488a03adbaddc4d9c896 authored over 16 years ago by Marc Sturm <[email protected]>

Base64: speed-up by using reserve; TOPPView tutorial updated; Added profiling and mem leak checking to FAQ

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3370 6adb6e08-d915-0410-9...

f07bfd32cf8c07fa4a7ad179af6eafc8930b51aa authored over 16 years ago by Marc Sturm <[email protected]>

Added swap-method to MSExperiment and FeatureMap; SpectrumCanvas: removed remains of feature pair visualization, used swap for addLayer(), improved cursor handling

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3367 6adb6e08-d915-0410-9...

7457ee55b1c250faa65b5b91728f1538293334d9 authored over 16 years ago by Marc Sturm <[email protected]>

SpectrumCanvas: added custom mouse cursors to indicate the current mode

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3366 6adb6e08-d915-0410-9...

f7cea5367b365e23f9f44cf4332613f9208309cf authored over 16 years ago by Marc Sturm <[email protected]>

removed some ICC error messages

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3365 6adb6e08-d915-0410-9...

99ff409043a162141ec009631e717a265f88425b authored over 16 years ago by Marc Sturm <[email protected]>

Added auto-update for projections

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3364 6adb6e08-d915-0410-9...

3f4bc4ed40ee5e35262fdc2b9c4812b41b86e20e authored over 16 years ago by Marc Sturm <[email protected]>

fixed bug in modifications handling

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3363 6adb6e08-d915-0410-9...

e51ea49303a59463ba264318cfcaf2e4ccbc698b authored over 16 years ago by Andreas Bertsch <[email protected]>

Unique peptides for training in RTModel and oligo encoding also for modified amino acids

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3362 6adb6e08-d915-0410-9...

0443e666742d5339ebbfd11a6e89772bb5ff626d authored over 16 years ago by NicoPfeifer <[email protected]>

updated configure to handle ICC10.1 correctly. this is likely to have destroyed compatiblity with earlier (<8.1) versions.. but who knows...

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3361 6adb6e08-d915-0410-9...

2cc94777c470aa37f94f4088ac5545dbe8fe4107 authored over 16 years ago by Chris Bielow <[email protected]>

Fixed bug 1961383: Catch the exception, which is being thrown if the gaussian width is smaller than the spacing between all adjacent raw data

points. Update of the test.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/Op...

afc49caf3fce4bee71979a1aeadc58968521dbe7 authored over 16 years ago by Eva Lange <[email protected]>

Fixed bug 1961383: If the gaussian width is smaller than the spacing between all data points, an exception is thrown.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3359 6adb6e08-d915-0410-...

0a0a35dda2bf4fd082d336209cbaf02fa43fb25d authored over 16 years ago by Eva Lange <[email protected]>

TOPPView: Meta data can be edited from Canvas context menu now, projections of features give a warning; features labeles are displayed after the number now

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3358 6adb6e08-d915-0410-9...

240f68996dc67cde475b9d9c297794c59cc4b500 authored over 16 years ago by Marc Sturm <[email protected]>

added message to indicate that DB tests were skipped

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3357 6adb6e08-d915-0410-9...

2ff251ad5d2a7008a802e93c6eb6b070c37fc1e9 authored over 16 years ago by Marc Sturm <[email protected]>

PP: renamed meta data'area' to 'maximumIntensit'

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3356 6adb6e08-d915-0410-9...

16a3821e143a8a74c69f40298531c10674747d4b authored over 16 years ago by Marc Sturm <[email protected]>

fixed test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3354 6adb6e08-d915-0410-9...

5a708b40de73f2813dda95c9744f6f53e6a49773 authored over 16 years ago by Alexandra Zerck <[email protected]>

Fixed DBAdapter test and warning in SpectrumAlignment

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3353 6adb6e08-d915-0410-9...

f9c8ee8a3e5f233e605f154c20558b64beb475d0 authored over 16 years ago by Marc Sturm <[email protected]>

added member to search for an modifications index

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3352 6adb6e08-d915-0410-9...

8d4a5988b49ffa3515da62680ef35b688977afa5 authored over 16 years ago by Andreas Bertsch <[email protected]>

Renamed Peak to RichPeak; Renamed RawDataPoint to Peak

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3351 6adb6e08-d915-0410-9...

a88fad3cf38a0518e27d62e7475f6ec8d91af972 authored over 16 years ago by Marc Sturm <[email protected]>

workaround for bug 1985366 from PeakPicker; some smaller bug-fixes for GaussFilter and PeakPicker

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3350 6adb6e08-d915-0410-9...

a5801d9eefe0e3f8fc30a4faf8f4c1e6a4af32a2 authored over 16 years ago by Andreas Bertsch <[email protected]>

2D view: updated projections interface, fixed painting problems with projections

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3349 6adb6e08-d915-0410-9...

df6ada21f5ab36b10d485253cf3bf24e61c15ac2 authored over 16 years ago by Marc Sturm <[email protected]>

Fixed TOPP test i broke

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3348 6adb6e08-d915-0410-9...

3ee6f688108de0007a552982553ab7eac4ae5d97 authored over 16 years ago by Marc Sturm <[email protected]>

TOPP: Replaced many MSExperiment<> by MSExperiment<RawDataPoint1D> to save memory

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3347 6adb6e08-d915-0410-9...

a68a19c126b66a3b743648ffde23bd74b8e5454f authored over 16 years ago by Marc Sturm <[email protected]>

use (correct form of) ISO 8601 date and time so that TOPP tests will run through regardless of locale setting

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3346 6adb6e08-d915-0410-9...

a713c79cf3d3f571e091d71fc00f1d883fa8d6c6 authored over 16 years ago by Clemens Gröpl <[email protected]>

TOPP: Added warning and removed meta data arrays when filtering/sorting spectra

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3345 6adb6e08-d915-0410-9...

11085f3a543dab6d29ed99c6532f6b7368575e62 authored over 16 years ago by Marc Sturm <[email protected]>

InstrumentSettings: added more scan modes; FileInfo: added scan mode to detailed info; FileFiter replaced 'remove_zoom' flag by 'remove_mode <mode>' option

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3344 6adb6e08-d915-0410-9...

7459bfae91878192d359d9a8e56e2c63649d6870 authored over 16 years ago by Marc Sturm <[email protected]>

Docu updatze

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3343 6adb6e08-d915-0410-9...

1563c099d71a514606772b106ea6e52e5c78b141 authored over 16 years ago by Marc Sturm <[email protected]>

FeatureFinder: changed labels of features to numbers; Updated exceptions: renamed Base to BaseExceptions, changed interface of IllegalArguments, removed template argument form ElementNotFound

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3342 6adb6e08-d915-0410-9...

2d609405ef8267a1bddccc4d47150bd2c4594e80 authored over 16 years ago by Marc Sturm <[email protected]>

Added method to clear all meta data arrays of an MSExperiment

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3341 6adb6e08-d915-0410-9...

4fd57066caa185060b3cddd4ed1eff74ee984a8a authored over 16 years ago by Marc Sturm <[email protected]>

Changed BaseSuperimposer interface; docu changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3340 6adb6e08-d915-0410-9...

780755856ea90542a7fcbeb2c343f6b9c977d89b authored over 16 years ago by Marc Sturm <[email protected]>

updated TOPP tutorial

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3339 6adb6e08-d915-0410-9...

302da1f840cb5b5a5a4b6dc0fe6958411525d92a authored over 16 years ago by Marc Sturm <[email protected]>

Added quantitation part of OpenMS tutorial

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3338 6adb6e08-d915-0410-9...

5374b7115317dc2c9cd62418422cd7823cbb08ad authored over 16 years ago by Marc Sturm <[email protected]>

added debug outout

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3337 6adb6e08-d915-0410-9...

3690a7f601944ad3b5a37fbbf392a878622f2c87 authored over 16 years ago by Marcel Grunert <[email protected]>

Fixes some checker errors; updated checker.php

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3336 6adb6e08-d915-0410-9...

501bea7de1e53ba792534b12d8f1e9e05e34a543 authored over 16 years ago by Marc Sturm <[email protected]>

Updated examples and tutorials

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3334 6adb6e08-d915-0410-9...

071772c0883aa756594dbd85bb486cde75611a78 authored over 16 years ago by Marc Sturm <[email protected]>

Added tests, inproved docu, added todos, improved algo parameters

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3333 6adb6e08-d915-0410-9...

53bea18d4ed6fdba6cae5dc012e62db30dbc7456 authored over 16 years ago by Marc Sturm <[email protected]>

removed useless const from return type to avoid ICC compiler warning

(alternatively use "const type&")

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-m...

0f0131c896425955e87c436e27b2d020f5fb291b authored over 16 years ago by Chris Bielow <[email protected]>

Added TransformationXMLFile

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3331 6adb6e08-d915-0410-9...

f5430cdecd0ccb1e04a952e13aefe3cadb393f7f authored over 16 years ago by Marc Sturm <[email protected]>

make OpenMS compatible with Intel Compiler (ICC - 10.1)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3330 6adb6e08-d915-0410-9...

4073e53049cf4b73f5ad16907ff378b3ac95112b authored over 16 years ago by Chris Bielow <[email protected]>

updated TrafoXML schema

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3329 6adb6e08-d915-0410-9...

479a94532a482e4af75975f36aeed5cd0b1088cf authored over 16 years ago by Marc Sturm <[email protected]>

DBConnection: changed interface; Makefile: default target is 'help' now; docu changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3328 6adb6e08-d915-0410-9...

ef067554eb7df6d329a656176e39a9acd5fef837 authored over 16 years ago by Marc Sturm <[email protected]>

Updated documentation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3327 6adb6e08-d915-0410-9...

705e3f12a8a80a47d10120ad7932b762f8be4c29 authored over 16 years ago by Marc Sturm <[email protected]>

Added first draft of TrafoXML; Added transformation output to map alignment algorithms

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3326 6adb6e08-d915-0410-9...

833756e8cf5e19ada4104641cf30edcfb0950e28 authored over 16 years ago by Marc Sturm <[email protected]>

Replaced LinearMapping by TransformationDescription

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3325 6adb6e08-d915-0410-9...

72fb3c49f80d8cac254112629eea5f2fcb679d35 authored over 16 years ago by Marc Sturm <[email protected]>

Renamed KERNEL/DPeakConstReferenceArray to DATASTRUCTURES/ConstRefVector; updated maintainers

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3324 6adb6e08-d915-0410-9...

9468c355f33ab630f9c081cede21fc4141d4b2d8 authored over 16 years ago by Marc Sturm <[email protected]>

isotope wavelet: bug fix for very large charge states

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3323 6adb6e08-d915-0410-9...

5da2ede962870dfc38b1e6fe0252586b097fece2 authored over 16 years ago by Rene Hussong <[email protected]>

Changed BaseSuperimposer interface

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3322 6adb6e08-d915-0410-9...

ae504b075dfb12a4f0a2d93b7802dce9d0063643 authored over 16 years ago by Marc Sturm <[email protected]>

Cleaned up shift superimposer a bit

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3321 6adb6e08-d915-0410-9...

b72385076ad88be99fa0196ce7861d489cbcf301 authored over 16 years ago by Marc Sturm <[email protected]>

Added missing headers

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3320 6adb6e08-d915-0410-9...

9d3dd58216c6b88d8dd660d0e5a8664ef01b9587 authored over 16 years ago by Marc Sturm <[email protected]>

Used file size and labels of ConsensusMap file descriptions

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3319 6adb6e08-d915-0410-9...

a7db8bc87e0d668125b0a382639033ed4f85d03d authored over 16 years ago by Marc Sturm <[email protected]>

Renamed PairMatcher to LabeledPairFinder; renamed BasePairFinder to BaseGroupFinder

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3318 6adb6e08-d915-0410-9...

52b96510f58d40f913a7ac25a398fefa8b65ccef authored over 16 years ago by Marc Sturm <[email protected]>

Changed interface of BasePairFinder

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3317 6adb6e08-d915-0410-9...

de115cb506f4d25a6bfc60a44081a93ec4717aa5 authored over 16 years ago by Marc Sturm <[email protected]>

ConsensusMap: added file label and size, removed merge method

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3316 6adb6e08-d915-0410-9...

98ddf67ce234cf5e30767f508dca5e8a2b46b323 authored over 16 years ago by Marc Sturm <[email protected]>

Removed ElementPair and FeaturePairsXML

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3315 6adb6e08-d915-0410-9...

ee1d5c64dc0ff65d34fb2706590490f2692de69e authored over 16 years ago by Marc Sturm <[email protected]>

BasePairFinder: enabled implicit unpacking

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3314 6adb6e08-d915-0410-9...

21de86dcc1cb655bf82db1b57f4a77ac1145798b authored over 16 years ago by Marc Sturm <[email protected]>

DelaunayPairFinder: moved stuff to C-file; PairMatcher: changed semantics of parameters

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3313 6adb6e08-d915-0410-9...

066b92bc0b51d2814b552b95d189b79023275312 authored over 16 years ago by Marc Sturm <[email protected]>

Improved class tests (recompiling all test is now not so often necessary)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3312 6adb6e08-d915-0410-9...

e0d1f109544342150d87c659622300531c1efa0c authored over 16 years ago by Marc Sturm <[email protected]>

FeatureHandler: added charge; ConsensusFeature: added charge; PairMatcher: derived from BasePairFinder now

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3311 6adb6e08-d915-0410-9...

b88337ea989506a79b739ea3d4037793ed3781d1 authored over 16 years ago by Marc Sturm <[email protected]>

SimplePairFinder: remved trafos

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3310 6adb6e08-d915-0410-9...

6f8424fbc9c75483502fa7888cbbf9603cfce754 authored over 16 years ago by Marc Sturm <[email protected]>

Removed struct and union hell

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3309 6adb6e08-d915-0410-9...

8b97cf9ef94ca00ce28761c06e4918daa83c5066 authored over 16 years ago by Marc Sturm <[email protected]>

Cleaned up SimplePairFinder

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3308 6adb6e08-d915-0410-9...

c78f1f3ee72d07f33a77eb4b38a0a4c3831010c3 authored over 16 years ago by Marc Sturm <[email protected]>

removed TODOs

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3307 6adb6e08-d915-0410-9...

81ddbfdb2fe315d0c06b4619a48f2c0779d7a59f authored over 16 years ago by Johannes Veit <[email protected]>

BasePairFinder: removed transformations

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3306 6adb6e08-d915-0410-9...

be4c257f2efe64abf07aefe1d08754256a02f836 authored over 16 years ago by Marc Sturm <[email protected]>

fixing mistake from last commit...

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3305 6adb6e08-d915-0410-9...

c15ea0d4308581e901a3286144aeef71bad37336 authored over 16 years ago by Johannes Veit <[email protected]>

- fixed DBExporter_test

- DBAdapter_test and DBImporter_test now leave a spectrum and a map in the test database (for mo...

93b5f019f650fa6480ef14397c7c502758147263 authored over 16 years ago by Johannes Veit <[email protected]>

bugfixing

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3303 6adb6e08-d915-0410-9...

923d55595e59be01684db62f763d4205b3707912 authored over 16 years ago by Vipul Patel <[email protected]>

Fixed CompareFourier... test; removed old QString::toAscii().data() calls; udated TOPPView tutorial images

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3302 6adb6e08-d915-0410-9...

948576c77d9c36521938aaad521963f04a93d362 authored over 16 years ago by Marc Sturm <[email protected]>

TOPPView: added TOPP on visible data, reassigned hotkeys and added documentation of hotkeys to tutorial; SpectrumCanvas: added getVisibleFeatureData() method;

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3301 6adb6e08-d915-0410-9...

504b1e5269408dc5849cd8f8a6371cd8d940bdf7 authored over 16 years ago by Marc Sturm <[email protected]>

add doku and spline function

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3300 6adb6e08-d915-0410-9...

34eaec68ab509a73c599537a0c015daf669dacca authored over 16 years ago by Vipul Patel <[email protected]>

SpectrumCanvas: added and used getVisiblePeakData method (preparation for 'Apply TOPP tool to visible data'); Spectrum3DCanvas: swapped m/z and RT dimension in overall_data_range_ and visible_area_ to make it consistent with the 2D view

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3299 6adb6e08-d915-0410-9...

f8928361ebb0ef7df10d88eff3a5538303542198 authored over 16 years ago by Marc Sturm <[email protected]>

forgot to check in improved results

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3298 6adb6e08-d915-0410-9...

28d26dfc82d44310fe2883fa60ed71c3e1cab0cd authored over 16 years ago by Clemens Gröpl <[email protected]>

Added rerunning of TOPP tool

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3297 6adb6e08-d915-0410-9...

de8a7970f7d6c14964fdb76efff7e23569355296 authored over 16 years ago by Marc Sturm <[email protected]>

TOPPtest: FeatureLinker_test -type unlabeled: fixed ini files and results

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3296 6adb6e08-d915-0410-9...

ee2e4aab844e86960d19645efdcc8589b23a964d authored over 16 years ago by Clemens Gröpl <[email protected]>

coding convention

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3295 6adb6e08-d915-0410-9...

d2632a9c209deed7fbc379c6106974ede3c88b2b authored over 16 years ago by Clemens Gröpl <[email protected]>

uncommented FeatureLinker_test part 2 since it fails currently fails on WinXP.

Wiedervorlage next week

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@...

ca5c2014e40f06715d9897e6a1be58d3e50e678e authored over 16 years ago by Clemens Gröpl <[email protected]>

LayerData: used RawDatapoints instead of Peak1D now - this saves a thrid of the overall space; DSpectrum/MSSpectrum: introduced new typdefs for MetaDataArray(s) to improve the usability

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3293 6adb6e08-d915-0410-9...

141269026c16b89a62949df18b9449faaacf6e20 authored over 16 years ago by Marc Sturm <[email protected]>

fixed type; do you compile your code?

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3292 6adb6e08-d915-0410-9...

9c5bc417b6034a00de09ccce08474f977fb77b83 authored over 16 years ago by Andreas Bertsch <[email protected]>

changed to spectrum alignment

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3291 6adb6e08-d915-0410-9...

e51963fc73971fe5d1bf2103ead0c3d4f0f59fd4 authored over 16 years ago by Marc Sturm <[email protected]>

Updated FeatureLinker result files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3290 6adb6e08-d915-0410-9...

fb6e9a5f5d7e4f041fb3aee320924bb41044b2d9 authored over 16 years ago by Marc Sturm <[email protected]>

add fouriertransformation, bugfixes--force-log

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3289 6adb6e08-d915-0410-9...

e7967a400b02b49155d8a6a560858dff63585c71 authored over 16 years ago by Vipul Patel <[email protected]>

FeatureLinker redesign

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3288 6adb6e08-d915-0410-9...

b6a0b3ae00412f44a2928cc180159f94596b5736 authored over 16 years ago by Clemens Gröpl <[email protected]>

TOPPView: opening options are now adapted to the data and the active widget

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3287 6adb6e08-d915-0410-9...

5fd05449cac170e92eb0d5d018fb249ebe05f52b authored over 16 years ago by Marc Sturm <[email protected]>

TOPPView: Removed option to force file type (preparation for new data opening options)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3286 6adb6e08-d915-0410-9...

ae44901c4f28d8d2585c3ff413421b10a5bd2793 authored over 16 years ago by Marc Sturm <[email protected]>

TOPPView: Moved meta data browsing from open dialog to main menu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3285 6adb6e08-d915-0410-9...

2968595b73e4796380385a67edfc1e0b1a29a4be authored over 16 years ago by Marc Sturm <[email protected]>

added IDDecoyProbability to ignore list

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3284 6adb6e08-d915-0410-9...

0ed16d1f23527f1abdfd0f7305544edd4baa0cd2 authored over 16 years ago by Andreas Bertsch <[email protected]>

added new TOPP tool for decoy probabilities

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3283 6adb6e08-d915-0410-9...

f01b7a50f3061a750750061bc4a792e118928399 authored over 16 years ago by Andreas Bertsch <[email protected]>

missed cleavages fixed

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3282 6adb6e08-d915-0410-9...

acafafa58d3c0c218ad7a786b9c1907e2ec53842 authored over 16 years ago by Andreas Bertsch <[email protected]>

added sorting at the end of window mower

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3281 6adb6e08-d915-0410-9...

0d18ba36a5d6d1eee47f2a4f4eb74e43bf32cadd authored over 16 years ago by Andreas Bertsch <[email protected]>

missed cleavages were not set correctly

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3280 6adb6e08-d915-0410-9...

203fc7713e57987cd540ae737e5e4dd96dcbe9dd authored over 16 years ago by Andreas Bertsch <[email protected]>

added CHARGE attribute to mgf files if precursor charge not 0

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3279 6adb6e08-d915-0410-9...

afb35452dd146a3e629d3de48a35940848ed4010 authored over 16 years ago by Andreas Bertsch <[email protected]>

easy conversion tool (open index.html) for XML files using a XSL-Transformation.

--

SuperHirn (.apml files) xsl (to csv file)

git-svn-id: https://open-ms.svn.sourceforge.net/...

12c703f711da541f59d624ba05ad04e8e0422efe authored over 16 years ago by Chris Bielow <[email protected]>

FFPP: Added abort reasons file; FFEval: added evaluation of abort reasons

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3277 6adb6e08-d915-0410-9...

5a876727ed9ffadb3b2a24a05453a4f183236928 authored over 16 years ago by Marc Sturm <[email protected]>

FeatureXML: changed id to xs:id; TOPPView displaying 'label' as feature identifier now (if present)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3276 6adb6e08-d915-0410-9...

07d40a449985f09465f8e73ab42df9aadd10f9cf authored over 16 years ago by Marc Sturm <[email protected]>

String: added two static methods for conversion of doubles to strings; MzDataHandler now tolerates whitespaces at the end of base64-encoded CDATA

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3275 6adb6e08-d915-0410-9...

6117edd02637ed56ff3b4e8f86a6d2b93f915e56 authored over 16 years ago by Marc Sturm <[email protected]>

Added FeatureFinder evaluation script

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3273 6adb6e08-d915-0410-9...

ec09b8bb9204cb318eda20eb62ef7c8e0f7783b5 authored over 16 years ago by Marc Sturm <[email protected]>

improved FuzzyDiff's self-documentation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3272 6adb6e08-d915-0410-9...

fd185345b2bb4ddc5566115e1c75a641d244b084 authored over 16 years ago by Clemens Gröpl <[email protected]>

original score preserved as metavalue

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3271 6adb6e08-d915-0410-9...

00891c1928cf4e65dce5ece0b5d6b093309fc10b authored over 16 years ago by Andreas Bertsch <[email protected]>

removed debug info

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3268 6adb6e08-d915-0410-9...

081c72bbc60472b27417cd539cd465dfcca19bdd authored over 16 years ago by Marcel Grunert <[email protected]>