github.com/OpenMS/OpenMS commits | Ecosyste.ms: OpenCollective

Fixed error in VersionInfo test *finger pointing at Clemens*

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3822 6adb6e08-d915-0410-9...

2c369c894a670ca065a95ef82d59220308661ef8 authored about 16 years ago by Marc Sturm <[email protected]>

added VersionInfo::getRevision(), renamed getMajorRevision to getMajorVersion + same for Minor; most TOPP tools will print out the SVN revision number now

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3821 6adb6e08-d915-0410-9...

15d0a012631e5e48827d2d1c28ec57234e68c4c9 authored about 16 years ago by Clemens Gröpl <[email protected]>

typo

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3820 6adb6e08-d915-0410-9...

8d6d67c182ffcfc3da79c03b4f8d888cf05cd6bf authored about 16 years ago by Clemens Gröpl <[email protected]>

FFPP: improved performance of conflict resolution

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3819 6adb6e08-d915-0410-9...

f2bd5ac01bd562d63f71e20c80076cac5d36bf73 authored about 16 years ago by Marc Sturm <[email protected]>

fix the fix

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3818 6adb6e08-d915-0410-9...

3cca8c9015e2de698423e13a5e5baddd82a8e81d authored about 16 years ago by Chris Bielow <[email protected]>

Added LabeledEval; changed default width of TopHatFiter to 10 da

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3817 6adb6e08-d915-0410-9...

89400d738754e0deb35472e53012ce6bc1dbe80b authored about 16 years ago by Marc Sturm <[email protected]>

fixed "Alt-Tab" bug in TOPPView

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3816 6adb6e08-d915-0410-9...

c5e9c6113c9a06122bfdcc75270c1f6f95dde24a authored about 16 years ago by Chris Bielow <[email protected]>

buffer fix

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3815 6adb6e08-d915-0410-9...

877d7ca5985f8426b55654c95f8e7112270876b5 authored about 16 years ago by Chris Bielow <[email protected]>

small bugfix to consensus-painting

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3814 6adb6e08-d915-0410-9...

89b173501b917c82d3a94e2052faf67391d2c749 authored about 16 years ago by Chris Bielow <[email protected]>

improved visualization of ConsensusMaps

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3813 6adb6e08-d915-0410-9...

edd26dd94ac489de063aa50e219b2d3242fc470b authored about 16 years ago by Chris Bielow <[email protected]>

better prompt with konsole

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3812 6adb6e08-d915-0410-9...

0149f343e26d246a37b5a495b1db6a60ea09b4eb authored about 16 years ago by Clemens Gröpl <[email protected]>

docu changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3811 6adb6e08-d915-0410-9...

0aab0086f27c6a9b6a15d44cb6de9003a2994de9 authored about 16 years ago by Marc Sturm <[email protected]>

removed resampling from BaselineFilter

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3810 6adb6e08-d915-0410-9...

c78897f8031d48c44e35f4f369a7516567453f6a authored about 16 years ago by Marc Sturm <[email protected]>

renamed MSMetaDataExplorer to MetaDataBrowser

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3808 6adb6e08-d915-0410-9...

9fa4d03590db4b429ff09f436d36a58c4aa46838 authored about 16 years ago by Marc Sturm <[email protected]>

The typeAsString() function template (defined in Types.h) can be used to find out the actual type of an object, e.g. if typedefs are used.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3807 6adb6e08-d915-0410-9...

4e6227e4c429f38869e50db9b93c21dbd4c7ef89 authored about 16 years ago by Clemens Gröpl <[email protected]>

DPeak and DRichPeak are metafunctions now: DPeak<1>::Type is Peak1D, etc. Added a note to CHANGELOG.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3806 6adb6e08-d915-0410-9...

7fc328f94e0008f5d66e0c413d6c2330243bc4fb authored about 16 years ago by Clemens Gröpl <[email protected]>

added a TODO

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3805 6adb6e08-d915-0410-9...

1cc66215d3bedbcb0e2422a25cee8ee9a0f62a9b authored about 16 years ago by Clemens Gröpl <[email protected]>

Param: replaced 'advanced' flag by a generic tagging mechanism

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3804 6adb6e08-d915-0410-9...

d72e937c4436bd57be4bc55b8cedf0b516e0a535 authored about 16 years ago by Marc Sturm <[email protected]>

Param: Improved command line parsing and its docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3803 6adb6e08-d915-0410-9...

b665b73c784c0e2a98f6bb42e1038f94716c0c0d authored about 16 years ago by Marc Sturm <[email protected]>

Removed DPeak everywhere. If you really miss them, consider #include<StandardTypes.h> and look at PeakXD, RichPeakXD

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3802 6adb6e08-d915-0410-9...

f3d21ba74c7fb445d8d99eb695337928b3b0dbc5 authored about 16 years ago by Clemens Gröpl <[email protected]>

Docu changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3801 6adb6e08-d915-0410-9...

abdcdc9b0894f05ca53c956757fc7490f6732ee8 authored about 16 years ago by Marc Sturm <[email protected]>

Stuff in FEATUREFINDER/ uses DoubleReal as IntensityType. Replaced Maintainer: Marcel Grunert by: Clemens Groepl, everywhere. Preparations for extinction of class DPeak. Some typos in documentation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3800 6adb6e08-d915-0410-9...

094c72775b39c955ab8fc4e0660baf963e7cb501 authored about 16 years ago by Clemens Gröpl <[email protected]>

SpectrumWidget/TOPPView: Moved close event handling from TOPPView to SpectrumWidget class

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3799 6adb6e08-d915-0410-9...

3ada55396ca5742ad9e12c97e38c3a14ff212b69 authored about 16 years ago by Marc Sturm <[email protected]>

TOPPView: changing meta data now flags the layer as modified; Before closing, the user is asked to store modified layers

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3798 6adb6e08-d915-0410-9...

b9180d9cdd5bbd313da5d159acc5beaed03fd25b authored about 16 years ago by Marc Sturm <[email protected]>

Removed MSExperimentExtern as it does not work with any of the alforithms anymore

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3796 6adb6e08-d915-0410-9...

0f9578a34605576d25a03c47b87aaa965bad7898 authored about 16 years ago by Marc Sturm <[email protected]>

Docu changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3795 6adb6e08-d915-0410-9...

e89e724061d3eeeeea4cc9aa9fd4ab35e22c90fe authored about 16 years ago by Marc Sturm <[email protected]>

Added first version of visualization of ConsensusFeatures

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3794 6adb6e08-d915-0410-9...

6e5d66a97f102b1fe8634667a7785206f8c40d64 authored about 16 years ago by Marc Sturm <[email protected]>

better layout for tables

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3792 6adb6e08-d915-0410-...

d9042ea59a401cea6919cb4b9cf41c117faed32c authored about 16 years ago by Clemens Gröpl <[email protected]>

TOPPView: added functionality to show modified layers by a asterisk after the name; Param: added second split for downward compatibility

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3791 6adb6e08-d915-0410-9...

1a1797a9a7fcbb3dd2f9d4185f683f98d76e2529 authored about 16 years ago by Marc Sturm <[email protected]>

Fixed TOPP error

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3790 6adb6e08-d915-0410-9...

e6c4872dec1fb5157e3613d5acafc0a5eb4ef23d authored about 16 years ago by Marc Sturm <[email protected]>

removed executable file permissions

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3789 6adb6e08-d915-0410-9...

47eef132efb02ad462e090bec5022bb3f7d80dba authored about 16 years ago by Clemens Gröpl <[email protected]>

Restrictions in Param .ini files are represented by min:max instead of min-max now, to avoid issues with small (1e-06) and negative numbers.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3788 6adb6e08-d915-0410-9...

7224adc0ca2c169e267004a92b4ece050deea3ce authored about 16 years ago by Clemens Gröpl <[email protected]>

changed threshold

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3787 6adb6e08-d915-0410-9...

5e343ba0e2b3992df3050e68cc6ec9435f859172 authored about 16 years ago by Andreas Bertsch <[email protected]>

changes for mgf file support in FileConverter

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3786 6adb6e08-d915-0410-9...

9ce5f6f1cd4f15c6b62a60cb2c2873a14f4c3fb5 authored about 16 years ago by Andreas Bertsch <[email protected]>

added simple support for OpenMP via --enable-openmp

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3785 6adb6e08-d915-0410-9...

6454aed1f53fb67a97557c93bd498422333f619d authored about 16 years ago by Andreas Bertsch <[email protected]>

changes for mgf file support in FileConverter

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3784 6adb6e08-d915-0410-9...

1683e65c4078312613fc93a99a9506716deaea5f authored about 16 years ago by Andreas Bertsch <[email protected]>

added Mascot generic format to FileConverter

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3783 6adb6e08-d915-0410-9...

cbc66ecc3786e9f60edf8f2f02c0e3b0b3ca6b6d authored about 16 years ago by Andreas Bertsch <[email protected]>

changed ignore properties

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3782 6adb6e08-d915-0410-9...

64827228df0aeb68756638ef3386d115203752e0 authored about 16 years ago by Andreas Bertsch <[email protected]>

Added alpha version of Mascot remote query

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3781 6adb6e08-d915-0410-9...

60d70f229378346d1c42c587d7e7b14e5da92845 authored about 16 years ago by Andreas Bertsch <[email protected]>

Added alpha version of Mascot remote query

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3780 6adb6e08-d915-0410-9...

ad05e6212cc8b8c4473c34d3edce5ebaaf4e0b77 authored about 16 years ago by Andreas Bertsch <[email protected]>

modification position and RTINSECONDS are read from the MascotXML file if present

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3779 6adb6e08-d915-0410-9...

78a41ee088a15b889f81691357ce743c76b955f5 authored about 16 years ago by NicoPfeifer <[email protected]>

FuzzyStringComparator now ignores XML stylesheet lines

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3777 6adb6e08-d915-0410-9...

9429e182019169a70f207c5138886081b58444c0 authored about 16 years ago by Marc Sturm <[email protected]>

LibSVM support can no longer be disabled; docu changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3776 6adb6e08-d915-0410-9...

48504975740979c9f59200054afd63897a6d88bd authored about 16 years ago by Marc Sturm <[email protected]>

Fixed TOPP test error

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3775 6adb6e08-d915-0410-9...

372ab2f2cd197d007b0996414267c47eb6f6a6c4 authored about 16 years ago by Marc Sturm <[email protected]>

added FileNotWritable exception

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3774 6adb6e08-d915-0410-9...

682c360d428c8e4102b59ac2e19be20ab33685c1 authored about 16 years ago by Andreas Bertsch <[email protected]>

SuffixArraySeqan_test should complete within time limit now, even in STL debug mode. Solution: shorter source/TEST/data/SuffixArraySeqan_test.txt. Otherwise mostly cosmetic changes, whitespace etc.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3773 6adb6e08-d915-0410-9...

f98d942efc36fad3a0f723db3fe7791370e357e4 authored about 16 years ago by Clemens Gröpl <[email protected]>

Removed XSLT line

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3772 6adb6e08-d915-0410-9...

b2da91c49e7e4230ac9a0bbba1fb4d69ceb02321 authored about 16 years ago by Marc Sturm <[email protected]>

SILACAnalyzer 0.6.2 test updated

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3771 6adb6e08-d915-0410-9...

c079ab4119579603236b72706aaa379733e7ab92 authored about 16 years ago by Lars Nilse <[email protected]>

Progresslogger: reset of stopwatch; FileInfo: min and max data spacing are shown now

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3770 6adb6e08-d915-0410-9...

14f36e7f59a201265c70db03482ee658fb218271 authored about 16 years ago by Marc Sturm <[email protected]>

Fixed minor bug that should not occur in real life

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3769 6adb6e08-d915-0410-9...

803074e4f0b05df53a0868d83bf2ecd848dfe013 authored about 16 years ago by Marc Sturm <[email protected]>

Wer das liest ist doof.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3768 6adb6e08-d915-0410-...

1f4ea913b2454b120c3611e383908b2397a47e89 authored about 16 years ago by Ole Schulz-Trieglaff <[email protected]>

Minor changes to SILACAnalyzer

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3767 6adb6e08-d915-0410-9...

2ae4d809ff4bc5d92df31017729e25901652d105 authored about 16 years ago by Marc Sturm <[email protected]>

SILACAnalyzer debug output added

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3765 6adb6e08-d915-0410-9...

1268fa1a599a35c270efb01b1169cc937c335d30 authored about 16 years ago by Lars Nilse <[email protected]>

SILACAnalyzer debug output added

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3764 6adb6e08-d915-0410-9...

9af87f669f23f732a306b1fa592c47cb239212ee authored about 16 years ago by Lars Nilse <[email protected]>

added notes on upgrading a SeqAn snapshot

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3763 6adb6e08-d915-0410-...

f2845491fb959a54f1dd57fcb89f7ab1e47de733 authored about 16 years ago by Clemens Gröpl <[email protected]>

TOPPView: New Hotkeys PageUp and PageDown; Spectrum2DCanvas: Projections now work when changing to a features layer as well

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3761 6adb6e08-d915-0410-9...

979dceb005ade046d7c7f577feff9c4a5ece1d90 authored about 16 years ago by Marc Sturm <[email protected]>

use mzData format instead of mgf for tandem; mgf leads to limited number of charge states

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3760 6adb6e08-d915-0410-9...

a3fea5ac73ba1516ce19d94c4b0a71c2e1d0c300 authored about 16 years ago by Andreas Bertsch <[email protected]>

HistogramWidget: added context menu to switch between log and lin mode; HistView: Min and max values are no longer ignored... (bugfix)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3759 6adb6e08-d915-0410-9...

4b8ae69ce5f3ac70325df9ab8df5f77a429e9ec1 authored about 16 years ago by Marc Sturm <[email protected]>

Added public FAQ

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3758 6adb6e08-d915-0410-9...

db2be3bbd7ad153a488741959a13524d33cd276f authored about 16 years ago by Marc Sturm <[email protected]>

added residue sets to distinguish natural and those which are not normally meant to be natural, e.g. Selenocysteine

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3757 6adb6e08-d915-0410-9...

4bcc71c4c9c2d569081fb9d1c5a99b9c0a355d7e authored about 16 years ago by Andreas Bertsch <[email protected]>

ConsensusMap is now derived from MetaInfoInterface and the information is written ConsensusXML files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3756 6adb6e08-d915-0410-9...

01fa9ac5be34bdf92328a8288e9f6ff00415b4cb authored about 16 years ago by Marc Sturm <[email protected]>

Added HistView to UTILS page

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3755 6adb6e08-d915-0410-9...

e1ba94aacc171ac689594fe835348e5389d5c3e2 authored about 16 years ago by Marc Sturm <[email protected]>

Updated command line help

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3754 6adb6e08-d915-0410-9...

fc23592d9ba82376dfe44ddf503d414630784a09 authored about 16 years ago by Marc Sturm <[email protected]>

Added HistView

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3753 6adb6e08-d915-0410-9...

21cba9fc34f03e2360769a152eed76f94f5e2715 authored about 16 years ago by Marc Sturm <[email protected]>

code cleanup

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3752 6adb6e08-d915-0410-9...

586dc46d0b8c0d1acaaa80ce9fee08eec67df744 authored about 16 years ago by Andreas Bertsch <[email protected]>

code cleanup

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3751 6adb6e08-d915-0410-9...

a7cd730e39bc20046cf387cc0c47941e981e564c authored about 16 years ago by Andreas Bertsch <[email protected]>

...

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3750 6adb6e08-d915-0410-9...

5cb764fac5c152c4a3e5f45dc1320ed05e19f54a authored about 16 years ago by Andreas Bertsch <[email protected]>

deleted obsolete SequenceDB class

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3749 6adb6e08-d915-0410-9...

942c86b7714496fbc5f3eb767787dc92eff5a5a2 authored about 16 years ago by Andreas Bertsch <[email protected]>

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3748 6adb6e08-d915-0410-941f-83917bcadc18

e9d1a853ab78ae64cee835282ed233fa89b32b35 authored about 16 years ago by Oliver Kohlbacher <[email protected]>

ConsensusMap: added unique map id member

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3747 6adb6e08-d915-0410-9...

5f35d056ed053ac479da6a5584fc17b5504c0278 authored about 16 years ago by Marc Sturm <[email protected]>

Added support for unique map IDs: ExperimentalSettings, FeatureXMLFile, MzMLFile, MzDataFile

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3746 6adb6e08-d915-0410-9...

8106d90a421f0c90a5a8cd0b723e73fb73dc0233 authored about 16 years ago by Marc Sturm <[email protected]>

File:find(...) throws an exception now, if the file is not found; FFWATERSHED: fixed minor bug

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3745 6adb6e08-d915-0410-9...

02210d61b8240ba6c5ade6f0e4ec344763924974 authored about 16 years ago by Marc Sturm <[email protected]>

preformance imrovements

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3744 6adb6e08-d915-0410-9...

6af4f0c728f81aaaea70f6322bdc3a7b3327063b authored about 16 years ago by Marc Sturm <[email protected]>

Param: renamed 'remove(prefix)' to 'removeAll(prefix)'; added 'remove(key)'

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3743 6adb6e08-d915-0410-9...

caa6503ecfbbc94955e9037ff83673e7cfd91a0f authored about 16 years ago by Marc Sturm <[email protected]>

adapted configure to MacOS (fixed problems with GCC version detection)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3741 6adb6e08-d915-0410-...

f213adc19b1d5142605a8c3905645468565225dd authored about 16 years ago by Oliver Kohlbacher <[email protected]>

SILACAnalyzer update

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3740 6adb6e08-d915-0410-9...

e38037357adc2d9b22e0dacce869669f8132334c authored about 16 years ago by Lars Nilse <[email protected]>

einmal gnuplot receipt reicht

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3739 6adb6e08-d915-0410-9...

b8feb1a3ae30b1dcd8d4300618317dce7a324113 authored about 16 years ago by Clemens Gröpl <[email protected]>

updated docu and similarity function for SimplePairFinder, fixed file permissions for .png

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3738 6adb6e08-d915-0410-9...

2803207afbc6159ef3e422a6f1a99b565c10302f authored about 16 years ago by Clemens Gröpl <[email protected]>

steady improvement ;)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3737 6adb6e08-d915-0410-9...

cd3092cb5ffd829478bea5775cf27045a73b5680 authored about 16 years ago by Clemens Gröpl <[email protected]>

ProgressLogger: Added completion time; FFWATERSHED: some minor changes to the output

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3736 6adb6e08-d915-0410-9...

2647f7f15df4fc6b69e0742974fbd063ac7a5683 authored about 16 years ago by Marc Sturm <[email protected]>

Added highly experimental (and unfinished) version of watershed segmentation FF

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3735 6adb6e08-d915-0410-9...

8c721c4d04abad9e8b5a4dec906fe48ea2da31cc authored about 16 years ago by Marc Sturm <[email protected]>

Fixed bug in ConvexHull2D::addPoint method - the point was simply appended without recalculating the convex hull

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3734 6adb6e08-d915-0410-9...

13e5b74ee93610a882f189a184ade387b0bb7af3 authored about 16 years ago by Marc Sturm <[email protected]>

docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3733 6adb6e08-d915-0410-...

e7c782bab460665e260924262e4fcfcea811ac1c authored about 16 years ago by Clemens Gröpl <[email protected]>

only load MS2 spectra

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3732 6adb6e08-d915-0410-9...

cbe8b2ecf2ebcf9527b9e29ac6aa8ca1b87ae71f authored about 16 years ago by Andreas Bertsch <[email protected]>

added interpolated_linear transformations

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3731 6adb6e08-d915-0410-9...

df1257b399169c979c84aff2e7ff9de6e543332c authored about 16 years ago by Clemens Gröpl <[email protected]>

revised docu for Feature class

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3730 6adb6e08-d915-0410-...

ee81c855214987e7fc77c547e12f80545b0daca8 authored about 16 years ago by Clemens Gröpl <[email protected]>

elc emacsclient_line_column docu changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3729 6adb6e08-d915-0410-...

a5cee0c4c7b160126009b88044b49b2ef725cf3f authored about 16 years ago by Clemens Gröpl <[email protected]>

Removed the "om_" prefix - it was too cumbersome in daily practice.

But om_help and om_help_verbose still have it.
Had to rename om_date to Date (abbreviated: D) to ...

80273e7cf061ea02ba499be285b2be7a34700122 authored about 16 years ago by Clemens Gröpl <[email protected]>

Docu changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3727 6adb6e08-d915-0410-9...

46ea0bbd59bfc90d7845922c513cefe7788c6da1 authored about 16 years ago by Marc Sturm <[email protected]>

docu changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3726 6adb6e08-d915-0410-9...

62a093079f05d035ca3b67f5e899002077a29b23 authored about 16 years ago by Marc Sturm <[email protected]>

Added WSDL support to TOPPBase

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3725 6adb6e08-d915-0410-9...

85cb194e1dbef63a44bacf67f811c9cb1ca52f22 authored about 16 years ago by Marc Sturm <[email protected]>

fixed numerical problems in Resampler TOPP test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3724 6adb6e08-d915-0410-9...

a49d2d794f219ea2b441e49137dfe8c872af2bac authored about 16 years ago by Marc Sturm <[email protected]>

Added SILACAnalyzer and QuantIDMapper (beta); configure requires Cluster 3.0 now

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3723 6adb6e08-d915-0410-9...

b198d552d0208ca766fa2be7839cb08f2ad116a9 authored about 16 years ago by Marc Sturm <[email protected]>

Reads RTINSECONDS from MascotXML if present

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3722 6adb6e08-d915-0410-9...

a92a96745619c0631978b6466041370d79cb0150 authored about 16 years ago by NicoPfeifer <[email protected]>

updated documentation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3721 6adb6e08-d915-0410-9...

239957d7c8b5f155377d5c3f9bea5a1979a3ef33 authored about 16 years ago by Marc Sturm <[email protected]>

TOPP: Moved resampling from NoiseFilter to Resampler

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3720 6adb6e08-d915-0410-9...

552b31436a492e144cf05a1fc0abb863d750ec8c authored about 16 years ago by Marc Sturm <[email protected]>

fixed test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3719 6adb6e08-d915-0410-9...

ebfe1914efff006317a441941492a11362d3cfd5 authored about 16 years ago by Marc Sturm <[email protected]>

LabeledPairFinder: Fixed RT shift estimation (optimal shift was not used after estimating it :)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3718 6adb6e08-d915-0410-9...

f60d00087f88a63eb99cfe2e1d2b0128dc36113a authored about 16 years ago by Marc Sturm <[email protected]>

Added FeatureLinker test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3717 6adb6e08-d915-0410-9...

7538aa7f2b1a8b88dc379b2400ad3febe9b31978 authored about 16 years ago by Marc Sturm <[email protected]>

FeatureLinker: added test of RT estimation; improved RT estimation - better starting value for x0 of gauss fit

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3716 6adb6e08-d915-0410-9...

cb6e58687e2eb79252eb73c68e6179e7b2faf4f3 authored about 16 years ago by Marc Sturm <[email protected]>