Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/OpenMS

The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS

option level uses StringList now no need for comma seperation anymore

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4031 6adb6e08-d915-0410-9...

93319e851057169ec069f5d2b5f1dc1429d7fb0c authored almost 16 years ago by David Wojnar <[email protected]>
Changes to mzML mapping file and CV file (will be merged into the official files somewhen)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4030 6adb6e08-d915-0410-9...

b79b4591fc20783d965da575cef97991ba0d7a8c authored almost 16 years ago by Marc Sturm <[email protected]>
fixed SematicValidtor value-type specifications

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4029 6adb6e08-d915-0410-9...

03dc111c0fcfcce090b54e7871f704519e6b827b authored almost 16 years ago by Andreas Bertsch <[email protected]>
changed CV inspector; added simple generic semantic validator program

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4028 6adb6e08-d915-0410-9...

e4cfc2882e6dc0383eeefa0ec3221d6764cdc5eb authored almost 16 years ago by Andreas Bertsch <[email protected]>
added generic framework for validation of CV terms

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4027 6adb6e08-d915-0410-9...

19941317c2fd18f1682162cc28722f64d3f766ca authored almost 16 years ago by Andreas Bertsch <[email protected]>
added generic framework for validation of CV terms

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4026 6adb6e08-d915-0410-9...

96b4c4e5b675c9cd5feeaad2fd1d9b7bf9d37613 authored almost 16 years ago by Andreas Bertsch <[email protected]>
proposal for changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4025 6adb6e08-d915-0410-9...

3fe6d70c6c7c6dbbe35857999b86a256acb5fc5c authored almost 16 years ago by Marc Sturm <[email protected]>
removed todo

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4024 6adb6e08-d915-0410-9...

e257603b7a9fe234fc3b771ffc19f3489107ebda authored almost 16 years ago by Chris Bielow <[email protected]>
todo changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4023 6adb6e08-d915-0410-9...

d3d7d6129997be35d045283c09db4eb2229fc795 authored almost 16 years ago by Chris Bielow <[email protected]>
FileMerger: parameter file_list is now a string list not a file

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4022 6adb6e08-d915-0410-9...

32d13179a72633e6aa0859fe8bc4a3d3acc9c84f authored almost 16 years ago by David Wojnar <[email protected]>
added MS2 file support

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4021 6adb6e08-d915-0410-9...

81e2206d136f2464b415e9a549afa7124f459ca7 authored almost 16 years ago by Andreas Bertsch <[email protected]>
added tree representation of child terms

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4020 6adb6e08-d915-0410-9...

734e98f3d6f1c22fa74ff87986a99ea3a1b1916d authored almost 16 years ago by Marc Sturm <[email protected]>
Instrument: added ion optics; SpectrumSettings: added native ID; MzMLFile: added handling of ion optics and native id

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4019 6adb6e08-d915-0410-9...

357fcaf8c2c2607d911de33957d5741836c57086 authored almost 16 years ago by Marc Sturm <[email protected]>
fixed bug in windows version of ProcessResource.C

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4018 6adb6e08-d915-0410-9...

02889eb650de5f68221da8018e0413ed2bc6c0a8 authored almost 16 years ago by Chris Bielow <[email protected]>
Added MzML to TOPP tools; added more tests for MzMLFile

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4017 6adb6e08-d915-0410-9...

90e85c0d234ff1a51a714b2d8005f719ca3eb90d authored almost 16 years ago by Marc Sturm <[email protected]>
First working version of MzML writing

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4016 6adb6e08-d915-0410-9...

ac00bf595e853b78e9e38652d98aa720b10bb92b authored almost 16 years ago by Marc Sturm <[email protected]>
added value-type checking for terms

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4015 6adb6e08-d915-0410-9...

aa847a2e5f4f7b23287e8956d7344105d9b7807c authored almost 16 years ago by Andreas Bertsch <[email protected]>
added todo

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4014 6adb6e08-d915-0410-9...

5360dab077c00834a6669bbc34ee97998807e390 authored almost 16 years ago by Andreas Bertsch <[email protected]>
change date_time get method usage

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4013 6adb6e08-d915-0410-9...

fbb899caef494e3bd94af323bb813a0df168bb29 authored almost 16 years ago by Andreas Bertsch <[email protected]>
Fixed ANDI/MS test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4012 6adb6e08-d915-0410-9...

25572c59d3f5ffeba11c1ce33a112089e572afff authored almost 16 years ago by Marc Sturm <[email protected]>
More MzML writing: finished up to <activation> today, <scan> and <binaryDataArray> to do

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4011 6adb6e08-d915-0410-9...

522fc8ccf0cbee629b8d358f55b640afafe75843 authored almost 16 years ago by Marc Sturm <[email protected]>
Date/DateTime: get now returns a string; MSExperiment: replaced date by date and time; MzML writing (up to 'run' tag)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4010 6adb6e08-d915-0410-9...

c0bd24a9cd86e72c713b4e01f3043e3ea56dc483 authored almost 16 years ago by Marc Sturm <[email protected]>
More MzML writing (finished up to instrumentConfigurationList)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4009 6adb6e08-d915-0410-9...

4f1821ed6744174ece55667a30f5366208c488ef authored almost 16 years ago by Marc Sturm <[email protected]>
unreferenced proteins are removed from IdXML, correction to FDRs and q-values

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4008 6adb6e08-d915-0410-9...

5ed8d4ca9aa9cf0c9660c97086da08a3d5bc4d81 authored almost 16 years ago by NicoPfeifer <[email protected]>
small update

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4007 6adb6e08-d915-0410-9...

222cdf8123b099715fa12dddf82d4048c31eaa99 authored almost 16 years ago by Chris Bielow <[email protected]>
Addded values to CVInspector

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4006 6adb6e08-d915-0410-9...

97c3aa5d3bc25e6f0464c5907cfc00f1d4a4f868 authored almost 16 years ago by Marc Sturm <[email protected]>
Added handling for parameter lists to several locations

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4005 6adb6e08-d915-0410-9...

e550e740b8e8956dc4d62418e462a969f7ac9a71 authored almost 16 years ago by Marc Sturm <[email protected]>
Improved OBO file parsing

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4004 6adb6e08-d915-0410-9...

8936a864e4cf745c7fa15ca8ecf1845557d36ef7 authored almost 16 years ago by Marc Sturm <[email protected]>
Oops, not all versions of sed support the -i option, fixed that

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4003 6adb6e08-d915-0410-9...

2732d20de36aa188262e78ea962ae71e12e352ae authored almost 16 years ago by Clemens Gröpl <[email protected]>
Started writing mzML; CVInspector => html

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4002 6adb6e08-d915-0410-9...

9a2c9539ab896472f94b018e1bf316a6643d9109 authored almost 16 years ago by Marc Sturm <[email protected]>
Minor improvement to CV

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4001 6adb6e08-d915-0410-9...

fc1f67ad9ef955f0fb5844882d87642b2401ec6e authored almost 16 years ago by Marc Sturm <[email protected]>
Fixed TOPPBase test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4000 6adb6e08-d915-0410-9...

e66e596bd26e8c1ccd410aff22fe806769b7ecc4 authored almost 16 years ago by Marc Sturm <[email protected]>
support for several options in commandline without comma seperation header-files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3999 6adb6e08-d915-0410-9...

059988625ae78576ab270fb51e812fe6e503f952 authored almost 16 years ago by David Wojnar <[email protected]>
support for several options in commandline without comma seperation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3998 6adb6e08-d915-0410-9...

bb1a5e23e7218f09eac513a434772676e61a032b authored almost 16 years ago by David Wojnar <[email protected]>
Todo changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3997 6adb6e08-d915-0410-9...

74d464516eac4a88238bf7e9ec74df48e96cd255 authored almost 16 years ago by Marc Sturm <[email protected]>
bug fix!

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3996 6adb6e08-d915-0410-...

0f2e351fc2441dddd10762751a7d213a4aa0464a authored almost 16 years ago by Clemens Gröpl <[email protected]>
bug fix?

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3995 6adb6e08-d915-0410-...

555c3d955b25c8bfee66e4a50da4ebba8b4b5660 authored almost 16 years ago by Clemens Gröpl <[email protected]>
warning: TIMEOUT:

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3994 6adb6e08-d915-0410-9...

1b84ab985549f4147ab9ce8d6deabfa7808468f0 authored almost 16 years ago by Clemens Gröpl <[email protected]>
enhanced TextExporter for ConsensusXML

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3993 6adb6e08-d915-0410-9...

9bbd7be0d6cd479720088e363c6caca7f0599cef authored almost 16 years ago by Clemens Gröpl <[email protected]>
typo in doc

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3992 6adb6e08-d915-0410-9...

67230f830886815b16ec3277a75e21e424e1c359 authored almost 16 years ago by Clemens Gröpl <[email protected]>
Updated MzML CV file

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3991 6adb6e08-d915-0410-9...

b38c7b2e7c679dc57aefdde955315787c8ddd1df authored almost 16 years ago by Marc Sturm <[email protected]>
MzMLFile: added support for indexedMzML; TextFile: allows reading of the first n lines now

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3990 6adb6e08-d915-0410-9...

62bf812a47510ec1e4c03295b0beb149461530d9 authored almost 16 years ago by Marc Sturm <[email protected]>
Todo changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3989 6adb6e08-d915-0410-9...

e79c1f278f929f01841fcab0d5cd0ec0dd6bf125 authored almost 16 years ago by Marc Sturm <[email protected]>
Small changes in FileInfo output layout

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3988 6adb6e08-d915-0410-9...

3e31caea767ed1ba3e10ab23ee29e075b48452d1 authored almost 16 years ago by Marc Sturm <[email protected]>
fix

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3987 6adb6e08-d915-0410-9...

f185e6af4f887977de1355830a2c1054fb43be26 authored almost 16 years ago by Chris Bielow <[email protected]>
added test; added error message to TOPPView if Help cannot be opened

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3986 6adb6e08-d915-0410-9...

5a3574216eaf5e7f95916eb0150fb4ad4e29a5fc authored almost 16 years ago by Chris Bielow <[email protected]>
bug fix

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3985 6adb6e08-d915-0410-9...

cdbb8b3178404eb5fe98950231c9702accf7ffb3 authored almost 16 years ago by Clemens Gröpl <[email protected]>
Added semantic validation of MzML; TOPPView: splash screen is shown for at least 1.5 sec

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3984 6adb6e08-d915-0410-9...

a0bf0d66abcb7830346ce304f5188af4d840e37c authored almost 16 years ago by Marc Sturm <[email protected]>
fixed array out of bounds bug

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3983 6adb6e08-d915-0410-9...

860c53117aa433e74fe8379cb26ac30be2337749 authored almost 16 years ago by Chris Bielow <[email protected]>
MzMLFile: added handling of CV term types

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3982 6adb6e08-d915-0410-9...

d4b805bc1035452b6b5be84358d85fec83c861db authored almost 16 years ago by Marc Sturm <[email protected]>
added IDConsensusFeatureMapper; added naive ProteinInference; used this for iTRAQ-Quantifier; some docu for PeptideIdenfication

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3981 6adb6e08-d915-0410-9...

46dccc43c1ed821c6e025b773b5b688d72ceffdf authored almost 16 years ago by Chris Bielow <[email protected]>
Fixed ANDIFile test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3980 6adb6e08-d915-0410-9...

9d18d21cf99eded94675f02755c9d4494603e626 authored almost 16 years ago by Marc Sturm <[email protected]>
ControlledVocabulary: added parsing of unparsed lines :)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3979 6adb6e08-d915-0410-9...

13dad7f3d1de99be957175963131f9a1de4124b0 authored almost 16 years ago by Marc Sturm <[email protected]>
Fixed some tests and warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3978 6adb6e08-d915-0410-9...

5650fd8569939276ba09fca1316b854c51b36bca authored almost 16 years ago by Marc Sturm <[email protected]>
Fixed DBAdapter test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3977 6adb6e08-d915-0410-9...

a4e2d5195bd6d4a4a539b6d41fb3fb86bdf42d97 authored almost 16 years ago by Marc Sturm <[email protected]>
MzML: support for possible precursor charges and several scan windows

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3976 6adb6e08-d915-0410-9...

301733c6a01cbc7b0ea39819bca4ae091af4dbeb authored almost 16 years ago by Marc Sturm <[email protected]>
Fixed TOPP tests (mzML changes)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3975 6adb6e08-d915-0410-9...

2d1849d420c9db3fad19853e129f48e0bee5ab12 authored almost 16 years ago by Marc Sturm <[email protected]>
improved MzML reading: more warnings, handling of data for which no member exists => meta data

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3974 6adb6e08-d915-0410-9...

30088ac721f3ef553f32962184b79b786152dd9b authored almost 16 years ago by Marc Sturm <[email protected]>
Finished generic semantic validator

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3973 6adb6e08-d915-0410-9...

a352697d98abc9c9b87b103a1f1e88092ea85c5d authored almost 16 years ago by Marc Sturm <[email protected]>
A couple of cahnges relates to MacOSX and a splashscreen for TOPPView

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3972 6adb6e08-d915-0410-9...

515605fd45479d950557da4a48d8e1d33ca8f2dd authored almost 16 years ago by Oliver Kohlbacher <[email protected]>
added support for protein identifications and peptide identifications to consensusXML, changed some maintainers

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3971 6adb6e08-d915-0410-9...

d33231c28f50d1bee5e748478e3ec5b3f5b019b0 authored almost 16 years ago by Clemens Gröpl <[email protected]>
Todo changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3970 6adb6e08-d915-0410-9...

93f883c979b7425bbe98abb624baa001ac6cb016 authored almost 16 years ago by Marc Sturm <[email protected]>
First implementation of semantic validator

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3969 6adb6e08-d915-0410-9...

5036b051f9129448c539a475cb29a20e0212a588 authored almost 16 years ago by Marc Sturm <[email protected]>
reordered ConsensusXML schema; added a TODO

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3968 6adb6e08-d915-0410-9...

f5559b948b23e2364ba43fa744996823e2727a12 authored almost 16 years ago by Chris Bielow <[email protected]>
SemanticValidator: added use of unknown/obsolete terms

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3967 6adb6e08-d915-0410-9...

8d69a538c36cb613a6ab31a4caf3123c2a9585b8 authored almost 16 years ago by Marc Sturm <[email protected]>
small things, work in progress

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3966 6adb6e08-d915-0410-9...

5e2c6dc83bfc9bf4c08b678f66294260cc8243f5 authored almost 16 years ago by Clemens Gröpl <[email protected]>
CV handling stuff

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3965 6adb6e08-d915-0410-9...

eb9a7b23ae798dce937c7fbfb25a500bf3a4b75a authored almost 16 years ago by Marc Sturm <[email protected]>
updated clustering example

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3964 6adb6e08-d915-0410-9...

73f4da8d0ca5d003f6781683b9be4112e09ecb7f authored almost 16 years ago by Mathias Walzer <[email protected]>
CV handling stuff

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3963 6adb6e08-d915-0410-9...

c6a0302456846538a0ef8257a40158e61e437ba5 authored almost 16 years ago by Marc Sturm <[email protected]>
MzMLFile: userParam changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3962 6adb6e08-d915-0410-9...

8cfff6641227c046c633a8c4947576805281398e authored almost 16 years ago by Marc Sturm <[email protected]>
Final changes to meta data classes for MzML

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3961 6adb6e08-d915-0410-9...

b104538e9c5a7527b7d68fed1cc4b62064267200 authored almost 16 years ago by Marc Sturm <[email protected]>
added some features to cv stuff

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3960 6adb6e08-d915-0410-9...

66d79a6ddf736bcc4623b063882dbb2d4cafcedc authored almost 16 years ago by Andreas Bertsch <[email protected]>
added CvMapping schema

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3959 6adb6e08-d915-0410-9...

e497aa76255f7ca8ef0670c7700ff0f09f000c12 authored almost 16 years ago by Andreas Bertsch <[email protected]>
Changed Instrument: several ion sources and detectors, software

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3958 6adb6e08-d915-0410-9...

d0b477107004e697ff9d4f1879840709413f65f5 authored almost 16 years ago by Marc Sturm <[email protected]>
ConsensusFeature += PeptideIdentifications, ConsensusMap += ProteinIdentifications

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3957 6adb6e08-d915-0410-9...

c2970d9f705b0f47551afe63994042165ec28c18 authored almost 16 years ago by Clemens Gröpl <[email protected]>
added mapping file support, without docs and testing for now

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3956 6adb6e08-d915-0410-9...

a677ef66f4dfc2fe7a4e0d991b21fb6e108c6aad authored almost 16 years ago by Andreas Bertsch <[email protected]>
Added order to IonSource, MassAnalyzer and IonDetector (for mzML)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3955 6adb6e08-d915-0410-9...

f513fcff4e7aa0716b768f38bb0830e062ba12f1 authored almost 16 years ago by Marc Sturm <[email protected]>
extended Consensus and FeatureXML to accomodate Peptide and ProteinIdentifications

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3954 6adb6e08-d915-0410-9...

abd4798ef652e0ee9d66901a7c7a21f431b88678 authored almost 16 years ago by Chris Bielow <[email protected]>
Finished MzMLFile options and added tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3953 6adb6e08-d915-0410-9...

74b81d9e59864fa923c37bf2337d8e06737de39a authored almost 16 years ago by Marc Sturm <[email protected]>
Removed ExperimentalSettings::ExperimentType, which was not used anyway

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3952 6adb6e08-d915-0410-9...

70d450fdb183764754bbb949d18e4d3aeb12d64a authored almost 16 years ago by Marc Sturm <[email protected]>
Docu changes and minor fixes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3951 6adb6e08-d915-0410-9...

a7c2055347a0b1e9018d8c33bc472b9c35fe1e74 authored almost 16 years ago by Marc Sturm <[email protected]>
Fixed ANDIFile

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3950 6adb6e08-d915-0410-9...

06425fbb477bdb38158f1f47abc88de336999305 authored almost 16 years ago by Marc Sturm <[email protected]>
Meta data changes for MzML: AcquisitionInfo, SourceFile, DataProcessing, ContactPerson

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3949 6adb6e08-d915-0410-9...

b31b0dd88e134b50302bf4b0cc079a4064a6f47d authored almost 16 years ago by Marc Sturm <[email protected]>
added some TODOs

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3948 6adb6e08-d915-0410-9...

3a43869643f91b2ba6232c223f7f1684e02dc6e7 authored almost 16 years ago by Chris Bielow <[email protected]>
added fix: if more than one precursor charge setting is available a warning is printed and the second charge setting causes the charge setting to be ignored...

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3947 6adb6e08-d915-0410-9...

76ce3eabfced3c7d94b4c079f5e942fada3dc625 authored almost 16 years ago by Andreas Bertsch <[email protected]>
some changes @ PILIS

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3946 6adb6e08-d915-0410-9...

fbcea4e63fef35da70c4204b5c6b117d33d99636 authored almost 16 years ago by Andreas Bertsch <[email protected]>
fixed bug, where wrong title leads to unexpected exception

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3945 6adb6e08-d915-0410-9...

d98f38e5585b9bca243a32b7dd64e74962f5b7fe authored almost 16 years ago by Andreas Bertsch <[email protected]>
fixed(?) test 32bit

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3944 6adb6e08-d915-0410-9...

95ba8b1cae8f9078b6d45bbb43134ebd3c7b14ca authored almost 16 years ago by Chris Bielow <[email protected]>
added experimentType="silac" to SilacAnalyzer's output

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3943 6adb6e08-d915-0410-9...

88637abd2fc6bdef410befa0e1a18e33b415b4a0 authored almost 16 years ago by Chris Bielow <[email protected]>
fixed test data; some documentation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3942 6adb6e08-d915-0410-9...

8983e9f39799d57ff3d7444714f4ea9ec2e13238 authored almost 16 years ago by Chris Bielow <[email protected]>
MetaDataBrowser: improved interface; BaseVisualizerGUI: merged with DataTable

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3941 6adb6e08-d915-0410-9...

8f565c1d866c76220d74a153a73f14552e8ca979 authored almost 16 years ago by Marc Sturm <[email protected]>
revised main loop of PoseClusteringAffineSuperimposer, did some other minor todos

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3940 6adb6e08-d915-0410-9...

cff56a29af3e51cc8b728f5b3ec4846881b10979 authored almost 16 years ago by Clemens Gröpl <[email protected]>
todone

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3939 6adb6e08-d915-0410-9...

68bea20c515766ece05d10e8e117199e73645b60 authored almost 16 years ago by Clemens Gröpl <[email protected]>
Fixed bug in LabeledPairfinder

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3938 6adb6e08-d915-0410-9...

d8b1f4481c634beb092bf08b09e2ceca2fa44855 authored almost 16 years ago by Marc Sturm <[email protected]>
Rewritten all meta data visualizers; some mionor other fixes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3937 6adb6e08-d915-0410-9...

0c33d622df30ed15b771b74819bdabc082fdd10b authored almost 16 years ago by Marc Sturm <[email protected]>
removed abundant output

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3936 6adb6e08-d915-0410-9...

0f05c0310848054ee91dd2840af7d38b043dec8b authored almost 16 years ago by Mathias Walzer <[email protected]>
compiler warnings removed

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3935 6adb6e08-d915-0410-9...

ce671aaf65c73102f6a07bb220ebc2e96b42bb7c authored almost 16 years ago by Mathias Walzer <[email protected]>
added MetaInfo to Consensus (via RichPeak2D);

added ExperimentType to ConsensusMap (to reflect XML schema);
documentation fixed;

git-svn-id: h...

9fe0aaefe1eba300e6f05844f2fa068c23272457 authored almost 16 years ago by Chris Bielow <[email protected]>
Fixed ANDI/MS handler and test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3933 6adb6e08-d915-0410-9...

7b75251b52a6f653df38ca9c7c6c89655586d581 authored almost 16 years ago by Marc Sturm <[email protected]>
added FeatureHandle::asMutable()

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@3932 6adb6e08-d915-0410-9...

df8a7efcff87e1f1eab4a84ab25b821e6dd1be66 authored almost 16 years ago by Clemens Gröpl <[email protected]>