Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/OpenMS

The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS

MzML 1.0 is no longer accepted; ScanFunction is no longer member of MassAnalyzer; Derived several classes from XMLFile

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4187 6adb6e08-d915-0410-9...

54af65f2b49f0426b94dfb01181b7061242ac129 authored almost 16 years ago by Marc Sturm <[email protected]>
XMLHandler: used improved error messages; ANDIFile: fixed last commit

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4186 6adb6e08-d915-0410-9...

9a1895d130f88a931835b80f16aeec347fda5a23 authored almost 16 years ago by Marc Sturm <[email protected]>
SILACAnalyzer bug resolved

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4185 6adb6e08-d915-0410-9...

abaaa36d3537b51864ca84dacc94131de7f697f2 authored almost 16 years ago by Lars Nilse <[email protected]>
SILACAnalyzer bug resolved

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4184 6adb6e08-d915-0410-9...

5f57b3d79ad82b9a524621732fad653c8a1fd7b0 authored almost 16 years ago by Lars Nilse <[email protected]>
mzMXL/mzData: improved spectrum type handling; XMLHandler: improved error messages

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4183 6adb6e08-d915-0410-9...

b738a2729473be7989137927ef9b5dc0c256919a authored almost 16 years ago by Marc Sturm <[email protected]>
fixed some issues with unit checking

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4182 6adb6e08-d915-0410-9...

1e79859935cc80f5fe261ed0c76e85fd6f48b93d authored almost 16 years ago by Andreas Bertsch <[email protected]>
MzML updated to the last schema, mapping file and CV version

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4181 6adb6e08-d915-0410-9...

ecd643a5b2d87dc0c83a8ec3063c959c35a7a53a authored almost 16 years ago by Marc Sturm <[email protected]>
added unit checking to semantic validator

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4175 6adb6e08-d915-0410-9...

0d3e95a1752dd95c8b26bfc3cf53600e7cba6d7a authored almost 16 years ago by Andreas Bertsch <[email protected]>
deleted Cluster 3.0 from build system

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4173 6adb6e08-d915-0410-9...

5dadb2bdd9be799e03cdd1868bf64de7b05c1233 authored almost 16 years ago by Andreas Bertsch <[email protected]>
minor changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4172 6adb6e08-d915-0410-9...

f92cc053e02d01ea02fe893af05760d8d2beec4f authored almost 16 years ago by Marc Sturm <[email protected]>
little bug fix

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4170 6adb6e08-d915-0410-9...

28ddf8afb1079aceedb1e1e36a285e97c5d98bf6 authored almost 16 years ago by Clemens Gröpl <[email protected]>
ConsensusFeature/Map: Improved handling of peptide/protein identifications; LabeledPairFinder: handles protein/peptide information correctly now

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4168 6adb6e08-d915-0410-9...

0733f173133df4c78d459161bb6dcc7f2b37f2ed authored almost 16 years ago by Marc Sturm <[email protected]>
docu changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4165 6adb6e08-d915-0410-9...

cb721363cd8698273667f0689dd9649b040abf36 authored almost 16 years ago by Marc Sturm <[email protected]>
TOPPView: splash screen is now also shown when no file is opened

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4162 6adb6e08-d915-0410-9...

d71f2d0be73578fdeefd711ed07e0154587be251 authored almost 16 years ago by Marc Sturm <[email protected]>
TOPPView: Splash screen is now always on top and status messages are shown

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4161 6adb6e08-d915-0410-9...

892142002d0a56b62a420f16909583a0154044f8 authored almost 16 years ago by Marc Sturm <[email protected]>
docu changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4160 6adb6e08-d915-0410-9...

6386cfbaf5cac0349f1b7afccd267d0ff9dd9a2b authored almost 16 years ago by Marc Sturm <[email protected]>
removed finished todo

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4159 6adb6e08-d915-0410-9...

cf3a3782ddeefb28f0140e5a135bf3b5a7d83a92 authored almost 16 years ago by Clemens Gröpl <[email protected]>
added progress reporting to ConsensusXMLFile

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4158 6adb6e08-d915-0410-9...

3e3a85677f57a9de4b6010ddd90200cc53581786 authored almost 16 years ago by Clemens Gröpl <[email protected]>
write_ini parameter tested, input/output parameters and lists have input/output file tag

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4157 6adb6e08-d915-0410-9...

58ad62bdfd10cbf55471a7ef201920b5c2e80549 authored almost 16 years ago by David Wojnar <[email protected]>
MzML: updated to preliminary schema version 1.10; Software: Added meta info

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4156 6adb6e08-d915-0410-9...

aff5d9b6985c779dbb5cf5a9e4460145ce25f697 authored almost 16 years ago by Marc Sturm <[email protected]>
added new algorithm apply_given_trafo to MapAligner

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4155 6adb6e08-d915-0410-9...

d62f1388dd54dc302960f5135fcacb24a63d5fca authored almost 16 years ago by Clemens Gröpl <[email protected]>
added new algorithm apply_given_trafo to MapAligner

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4154 6adb6e08-d915-0410-9...

b88ba3e90db14108ead5054cc28289b22106c144 authored almost 16 years ago by Clemens Gröpl <[email protected]>
added unimod ontology to SemanticValidator

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4153 6adb6e08-d915-0410-9...

6a7f49b19f4080ce2f13843561ac90f96048dbb4 authored almost 16 years ago by Andreas Bertsch <[email protected]>
store(): if filename is -, write to std::cout

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4152 6adb6e08-d915-0410-9...

67563739ba0a3692137075f923704af0885989a6 authored almost 16 years ago by Clemens Gröpl <[email protected]>
Added native ID handling for MSP, MS2 and MGF format

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4149 6adb6e08-d915-0410-9...

2dc7aab73c9bddb66e80f5e0a2faaedcc3970679 authored almost 16 years ago by Marc Sturm <[email protected]>
update type definitions of cv

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4148 6adb6e08-d915-0410-9...

f6f0bcc6e745acfaaf58e627badaaba0e2673085 authored almost 16 years ago by Andreas Bertsch <[email protected]>
ANDIFile: added native ID, added test with different peak type

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4146 6adb6e08-d915-0410-9...

fa9f32410cbea2d4b3ce6b489f8f7951ca71a47c authored almost 16 years ago by Marc Sturm <[email protected]>
Added test with different peak types to peak file adapters

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4144 6adb6e08-d915-0410-9...

a3c9581795e5aa2c8405574b9f79665c67cdf109 authored almost 16 years ago by Marc Sturm <[email protected]>
Added native ID type to ExperimentalSettings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4143 6adb6e08-d915-0410-9...

e5b376608b21a74d4d5b862072863c7620edf260 authored almost 16 years ago by Marc Sturm <[email protected]>
added todo for rewriting parsers

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4142 6adb6e08-d915-0410-9...

c475db892ef5b5014424008ea6a0ec3059a93800 authored almost 16 years ago by Andreas Bertsch <[email protected]>
fixed bug for MinGW: do NOT use const_reverse_iterator! the compiler is simply broken. Use reverse_iterator instead!

added to FAQ: add your TOPP tool to getToolList()

git-svn-id: https://open-ms.svn.sourceforge.n...

6e88eb27cf0ec5ffaf7dd75df49d8f9c981b5043 authored almost 16 years ago by Chris Bielow <[email protected]>
refixed error....

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4140 6adb6e08-d915-0410-9...

97fb1d9fd71004f4014e36505bdf4770ca724b14 authored almost 16 years ago by Andreas Bertsch <[email protected]>
Docu: Moved default parameter and TOPP command line docu from separate pages to the actual docu of the tool/class

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4139 6adb6e08-d915-0410-9...

fcb17c0a0575d1c78630bca5b6ef8d8a31379acc authored almost 16 years ago by Marc Sturm <[email protected]>
lists can be restricted now, Param::load and store use lists as well

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4138 6adb6e08-d915-0410-9...

9d7f3fbff1d0ba7815907efdab37f3c9469bbbf2 authored almost 16 years ago by David Wojnar <[email protected]>
fuzzy comparison understands a whitelist now. xml-stylesheet is on the whitelist by default now, but this should change soon when cmake is up.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4137 6adb6e08-d915-0410-9...

3820fd14272a47547ddc83d5d7a453daf800abc1 authored almost 16 years ago by Clemens Gröpl <[email protected]>
initial

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4136 6adb6e08-d915-0410-...

4fd1b0be4acba3c47e1621ad5fc2cf2a428b3982 authored almost 16 years ago by Clemens Gröpl <[email protected]>
Different default values and some more uncomfortable parameter combinations forbidden

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4135 6adb6e08-d915-0410-9...

f9f7bd19bb76ccc4f81cd639cc8fed583143c1df authored almost 16 years ago by NicoPfeifer <[email protected]>
fixes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4134 6adb6e08-d915-0410-9...

fb481449d3da59eee38533f8352930e5915f180b authored almost 16 years ago by Marc Sturm <[email protected]>
Added TOPP tools CLI to the TOPP documentation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4133 6adb6e08-d915-0410-9...

5a35867b81a3fcf1702088dc6cb4b85f3525cad6 authored almost 16 years ago by Marc Sturm <[email protected]>
additional scoring results from sequest are written to metainfo

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4132 6adb6e08-d915-0410-9...

7ded38ecdbfb201ab6fc6722f10444465d14dded authored almost 16 years ago by Clemens Gröpl <[email protected]>
added UTILS tool to create decoy databases; only reverse databases are possible at the moment

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4131 6adb6e08-d915-0410-9...

a31335fc1ea63b03b2ca0dbf049872c27e445615 authored almost 16 years ago by Andreas Bertsch <[email protected]>
Merged PeakPicker and PeakPickerCWT

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4130 6adb6e08-d915-0410-9...

00ec73981d5b4a082917e94c84eaa1c512d076b1 authored almost 16 years ago by Marc Sturm <[email protected]>
added gsl frees; I have still heavy memory problems on some datasets

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4128 6adb6e08-d915-0410-9...

dafc549c5bc3e87f118b8bea618fc3cacceaad29 authored almost 16 years ago by Andreas Bertsch <[email protected]>
removed dispensable output

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4127 6adb6e08-d915-0410-9...

607845c5b76af341b1b95acb19c2f2a08c2a9c74 authored almost 16 years ago by Mathias Walzer <[email protected]>
Todo changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4124 6adb6e08-d915-0410-9...

28cd8aafd532fe8e703fadc6fb16deea871916b0 authored almost 16 years ago by Marc Sturm <[email protected]>
TOPPBase: improved error handling of numerical parameters

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4123 6adb6e08-d915-0410-9...

7ffc616bd403d8e0fc5857c203ad531db1159f61 authored almost 16 years ago by Marc Sturm <[email protected]>
liked related TOPP tools in TOPP documentation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4122 6adb6e08-d915-0410-9...

742ea95be1588b2f5be4fa1e2c8fb8894c400598 authored almost 16 years ago by Marc Sturm <[email protected]>
TOPP ConsensusID: supports consensus ID of featureXML and consensusXML now

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4120 6adb6e08-d915-0410-9...

0a72a8537f0ecea566bcedd2521fcf5e9c3982ec authored almost 16 years ago by Marc Sturm <[email protected]>
minor fixes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4119 6adb6e08-d915-0410-9...

2458b2b54051e7336bb7c4287d81bb8f8efc917f authored almost 16 years ago by Marc Sturm <[email protected]>
SILACAnalyzer: Renamed new parameter, removed two warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4117 6adb6e08-d915-0410-9...

57929920343ced47cc5c1429f67f65997673808f authored almost 16 years ago by Marc Sturm <[email protected]>
ConsensusXMLFile now supports linking peptide identifications to identification runs and the meta data of the identification run is written as well; Adepted coding convention to new test macros

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4116 6adb6e08-d915-0410-9...

eaa8ed05728ab00497861c871774fb9c1b4c445e authored almost 16 years ago by Marc Sturm <[email protected]>
put IDRTCalibration on ignore list

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4114 6adb6e08-d915-0410-9...

a3f2399e933d519bcf76d3c3a35d350a1fadc4a8 authored almost 16 years ago by NicoPfeifer <[email protected]>
FeatureXMLFile now correctly links peptide and protein identifications and stores all the meta data from the identification run

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4113 6adb6e08-d915-0410-9...

e7654e94651de7904eb906bb588737bb6022bae1 authored almost 16 years ago by Marc Sturm <[email protected]>
Additional tests and documentation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4112 6adb6e08-d915-0410-9...

cebfc28da98e9682cb9e9df1a47262c0f3f32422 authored almost 16 years ago by NicoPfeifer <[email protected]>
Fixed error in Makefile

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4110 6adb6e08-d915-0410-9...

6338b7d7a3caa00b424acbdbea82615416128e63 authored almost 16 years ago by Marc Sturm <[email protected]>
Changed test files for TextExporter to incorporate predicted RT

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4109 6adb6e08-d915-0410-9...

0e05d3341dc0a02afd86a847ca3826b5c73cdd21 authored almost 16 years ago by NicoPfeifer <[email protected]>
fixed an error in SequestOutfile, where 'id#' column was required

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4108 6adb6e08-d915-0410-9...

c7867cae9bbd2d6a0f2601bb0edf8111483aeeae authored almost 16 years ago by Andreas Bertsch <[email protected]>
Added IDRTCalibration to linearly fit IDs to calibrants

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4107 6adb6e08-d915-0410-9...

6968eb52495f79c743fb443e47ed82deb69c74de authored almost 16 years ago by NicoPfeifer <[email protected]>
replaced external clusterlib with OpenMS methods(fixed a glitch), added parameter, adjusted testfile

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4106 6adb6e08-d915-0410-9...

85810ee8327f6d242563e7c983a09e305139f250 authored almost 16 years ago by Mathias Walzer <[email protected]>
replaced external clusterlib with OpenMS methods(fixed a glitch), added parameter, adjusted testfile

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4105 6adb6e08-d915-0410-9...

bbe192c8be3730d5ebe7b62be33f940626c3c3a1 authored almost 16 years ago by Mathias Walzer <[email protected]>
TextExporter now also reports predicted RTs if they are present

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4099 6adb6e08-d915-0410-9...

6aad4c03fceee742949ef40b7f3a7a4c60cf29ad authored almost 16 years ago by NicoPfeifer <[email protected]>
Docu changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4098 6adb6e08-d915-0410-9...

aba3c69d1d9c56ccd962ce509f7698bb4c993a01 authored almost 16 years ago by Marc Sturm <[email protected]>
First part of changes to TOPP ConsensusID - for features and consensus features, I have to fix the protein/peptide writing first

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4097 6adb6e08-d915-0410-9...

069e575eb7bd2ced99f21aa92644484050f406f2 authored almost 16 years ago by Marc Sturm <[email protected]>
Updated list types (int and float are possible now)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4092 6adb6e08-d915-0410-9...

8af1ffcb5362d5dd21182944c511e6018d74211e authored almost 16 years ago by Marc Sturm <[email protected]>
Replaced QuantIDMerger by IDMapper (now functional)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4090 6adb6e08-d915-0410-9...

c024435e70bd34d3423740a399af3986e67d5cc9 authored almost 16 years ago by Marc Sturm <[email protected]>
Improved TOPP parameter types; FileMerger: new interface

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4088 6adb6e08-d915-0410-9...

eb26e2a6279553168ae008361ed70dc8c320d98e authored almost 16 years ago by Marc Sturm <[email protected]>
Updated PHP scripts according to the changes in tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4087 6adb6e08-d915-0410-9...

0d927643e88895f1db13bc6753db2d6f5ab52f86 authored almost 16 years ago by Marc Sturm <[email protected]>
big revision of TEST macros, better support for relative and absolute error

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4086 6adb6e08-d915-0410-9...

5b8d64823976e0eec791cb29a82efe769f4f4150 authored almost 16 years ago by Clemens Gröpl <[email protected]>
minor changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4085 6adb6e08-d915-0410-9...

1427bd7ee1db6b8119e9f0899a8103d41068ea6a authored almost 16 years ago by Clemens Gröpl <[email protected]>
added a data filer for Size of ConsensusFeatures (number of elements) and Features (number of subordinates)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4084 6adb6e08-d915-0410-9...

035eccb616fa143c897cdffb480210ad17e18658 authored almost 16 years ago by Clemens Gröpl <[email protected]>
TOPPBase: Improved list parameter handling

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4075 6adb6e08-d915-0410-9...

106e4dc2403a49913ba5074268b21e587ef065e4 authored almost 16 years ago by Marc Sturm <[email protected]>
IDFilter standard values for best_n_*_hits used differently

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4074 6adb6e08-d915-0410-9...

6d994579789055bfd404c93ff6847e56d52e3100 authored almost 16 years ago by NicoPfeifer <[email protected]>
Removed FeatureXMLHandler; Removed ConsensusXMLHandler

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4071 6adb6e08-d915-0410-9...

ede00ef485fff8195fabe639b37f9f57e27dfaf4 authored almost 16 years ago by Marc Sturm <[email protected]>
Added peptide and protein identifications to featureXML

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4066 6adb6e08-d915-0410-9...

1f54cafbbe1bb899cc0182faeb50f824742c785a authored almost 16 years ago by Marc Sturm <[email protected]>
Merged all ID mappers

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4065 6adb6e08-d915-0410-9...

d7e507c3b8dfc11e7be145d4f76968baa99eb759 authored almost 16 years ago by Marc Sturm <[email protected]>
Update ID mappers

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4063 6adb6e08-d915-0410-9...

efa995496ce83f752557b9dd32e16d1430b32ce4 authored almost 16 years ago by Marc Sturm <[email protected]>
Text exporter with csv option

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4062 6adb6e08-d915-0410-9...

bf32b1516793765ee1fd56a7965543d3374d0b3d authored almost 16 years ago by NicoPfeifer <[email protected]>
Docu changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4061 6adb6e08-d915-0410-9...

c8bfd4af523742185c19fa968090fdd059d8183d authored almost 16 years ago by Marc Sturm <[email protected]>
MzData, MzXML: improved nativeID handling and precursor spectrum referencing

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4060 6adb6e08-d915-0410-9...

1d5318d8ecf4f38949437d7cbb99eb1da55e286f authored almost 16 years ago by Marc Sturm <[email protected]>
fixed TOFCalibration tutorial

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4058 6adb6e08-d915-0410-9...

f5287df7facdf322838eb4baf06436e4586a9d6f authored almost 16 years ago by Alexandra Zerck <[email protected]>
ConsensusMap: added equality operator, added data processing; FeatureMap: added data processing

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4056 6adb6e08-d915-0410-9...

85fee26f86ff5ec9bd71e984a27d723031bd91e4 authored almost 16 years ago by Marc Sturm <[email protected]>
some updates to the model; added NTerm losses

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4051 6adb6e08-d915-0410-9...

e111a0cc31e274011c6cb2591c1917bce24dd915 authored almost 16 years ago by Andreas Bertsch <[email protected]>
Added data processing to ConsensusMap and FeatureMap

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4050 6adb6e08-d915-0410-9...

2da0561b077f115fbb16119a9eb6f989dcfbe039 authored almost 16 years ago by Marc Sturm <[email protected]>
comma separated lists now separated by blanks

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4049 6adb6e08-d915-0410-9...

e6662be839dfa7ad4732a9409bcfcdbcc26c6816 authored almost 16 years ago by David Wojnar <[email protected]>
mzML changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4047 6adb6e08-d915-0410-9...

e31f6c4ba761fcdae8091f12bde386b3e32c6dc5 authored almost 16 years ago by Marc Sturm <[email protected]>
Date: today() is static; DateTime: now() is static; TOPPBase: added method for tracing of data processing

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4046 6adb6e08-d915-0410-9...

071f3d129a9e5bef5a4f911d2f33ca11bec770a3 authored almost 16 years ago by Marc Sturm <[email protected]>
Added method to visualize all container elemtns

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4045 6adb6e08-d915-0410-9...

ea6030668523403d8435c47bdf05d4be92b08428 authored almost 16 years ago by Marc Sturm <[email protected]>
Improved docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4044 6adb6e08-d915-0410-9...

ed9c678c3010d4357686615d98a25d5a099313ef authored almost 16 years ago by Marc Sturm <[email protected]>
SemanticValidator/MzMLValidator: added checking of term names - fixed found errors

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4043 6adb6e08-d915-0410-9...

eb809928ce52fd947dc4bbcf4af9e8ff257d6855 authored almost 16 years ago by Marc Sturm <[email protected]>
Updated mzML support

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4042 6adb6e08-d915-0410-9...

4fa7d83f683decf49f99ae7d050f051dcf75bb97 authored almost 16 years ago by Marc Sturm <[email protected]>
the word "error" triggers red highlighting in test builds => shortened the boring message

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4041 6adb6e08-d915-0410-...

95bb77183cf7c011862e5d1ac3ac2e78440e88d8 authored almost 16 years ago by Clemens Gröpl <[email protected]>
not-a-number values (nan) will always be printed as "nan" (this should fix TextExporter_test on windows platforms)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4040 6adb6e08-d915-0410-...

ea1ecf95cdc813b69f275c272df4131565cdbbcd authored almost 16 years ago by Clemens Gröpl <[email protected]>
added MS2 support to FileConverter

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4039 6adb6e08-d915-0410-9...

2069b1189e5f5388aa489825d091db61f449ab51 authored almost 16 years ago by Andreas Bertsch <[email protected]>
docu changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4038 6adb6e08-d915-0410-9...

384e68635aa669034b4453320ed7978e5af7ed1c authored almost 16 years ago by Marc Sturm <[email protected]>
options are no longer seperated by commas

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4037 6adb6e08-d915-0410-9...

6b70294bc27dc6c2ec92718ae39513d2a2444d39 authored almost 16 years ago by David Wojnar <[email protected]>
added IDExtractor to documentation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4036 6adb6e08-d915-0410-9...

14d2f5b293154110982d11e32425115c03c932a5 authored almost 16 years ago by NicoPfeifer <[email protected]>
Added IDExtractor to UTILS

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4035 6adb6e08-d915-0410-9...

f45bc0e254a7027c6b657db09c3097efdf2843c8 authored almost 16 years ago by NicoPfeifer <[email protected]>
Improved interface

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4034 6adb6e08-d915-0410-9...

f6ebb9a2dad16d2ca5885ebb8fb13ba51d7b6d17 authored almost 16 years ago by Marc Sturm <[email protected]>
mzML: added new CV terms; SemanticValudator: added xsd:date type; DateTime changed two more get methods, added formats to set method

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4033 6adb6e08-d915-0410-9...

8e26a33c73597c53486c16fa1110322cc958c7a1 authored almost 16 years ago by Marc Sturm <[email protected]>
changed mzML files to latest CV version

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4032 6adb6e08-d915-0410-9...

f0cd71c626e1964cbca0945777753fc42150a61a authored almost 16 years ago by Marc Sturm <[email protected]>