github.com/OpenMS/OpenMS commits | Ecosyste.ms: OpenCollective

Negative sigma parameters if RT shift estimation are now used as absolute values

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4795 6adb6e08-d915-0410-9...

ab8327a1220bef5a7707f5a81e5d41d9bf68ce11 authored over 15 years ago by Marc Sturm <[email protected]>

TOPPView: Quick fix for spectrum browser performance issue: update can now be prevented by hiding the browser. Better solution will follow.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4794 6adb6e08-d915-0410...

3f0e8c639839d9e037192fd62db7a3dba53d99b7 authored over 15 years ago by Johannes Veit <[email protected]>

Merged Precursor and PrecursorPeak (now Peak1D); docu changes; removed wavelet FF

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4793 6adb6e08-d915-0410-9...

fbd9234f6e0bf02965d8883a11103b9aca582ca9 authored over 15 years ago by Marc Sturm <[email protected]>

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4792 6adb6e08-d915-0410-941f-83917bcadc18

481c6cb2f708abcaeee83589038a7282f89c34b5 authored over 15 years ago by Erhan Kenar <[email protected]>

fixed warning caused by OpenMP

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4791 6adb6e08-d915-0410-9...

10263a97e39036a8e77449c6b709a91cfe4f1122 authored over 15 years ago by Alexandra Zerck <[email protected]>

enables OpenMP for ALL VS by default!

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4790 6adb6e08-d915-0410-9...

d0a3fd09a85c5b38ea6d06d003409b8ae6b9fc44 authored over 15 years ago by Chris Bielow <[email protected]>

fixed problem with line endings in SILAC test file

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4789 6adb6e08-d915-0410-9...

ce4424c50583631e6f9df65c70a71de7cf7b82ca authored over 15 years ago by Marc Sturm <[email protected]>

Fixed docu and tutorials

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4788 6adb6e08-d915-0410-9...

c1fc0af1a4b96f7bd6f2198a9092c0350190bda0 authored over 15 years ago by Marc Sturm <[email protected]>

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4787 6adb6e08-d915-0410-941f-83917bcadc18

ce0a00f3f60c841f4689df4585e014244d04920f authored over 15 years ago by Erhan Kenar <[email protected]>

changes in de novo code

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4786 6adb6e08-d915-0410-9...

353f11e4bb305e94529a1dde950ffbc4c935e7c9 authored over 15 years ago by Andreas Bertsch <[email protected]>

more changes for parallelization of pp

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4785 6adb6e08-d915-0410-9...

8245863fb7e8b9199c20df4641bae216f5f00f51 authored over 15 years ago by Alexandra Zerck <[email protected]>

fixed bug: negative intensities caused vector access with negative indices

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4784 6adb6e08-d915-0410-9...

bfab9719fefe5d6248e1a8214f5a8cc131bda191 authored over 15 years ago by Alexandra Zerck <[email protected]>

improved de novo baseclases

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4783 6adb6e08-d915-0410-9...

eaa142988a935e01d0541b31b8f2bb72419ce4cc authored over 15 years ago by Andreas Bertsch <[email protected]>

fixed initialization of member variables

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4782 6adb6e08-d915-0410-9...

15ccc79211dfadc56d5c5f73d2f65ee3bd4317de authored over 15 years ago by Alexandra Zerck <[email protected]>

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4781 6adb6e08-d915-0410-941f-83917bcadc18

e2a81f87437a3fd1807266dde1c2c4865429bb7d authored over 15 years ago by Oliver Kohlbacher <[email protected]>

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4780 6adb6e08-d915-0410-941f-83917bcadc18

71c38fb915d2c362e4f15a64b43530ede7f12029 authored over 15 years ago by Oliver Kohlbacher <[email protected]>

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4779 6adb6e08-d915-0410-941f-83917bcadc18

4bc4a1df58303f38ea35fc3811437cbb64482e78 authored over 15 years ago by Oliver Kohlbacher <[email protected]>

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4778 6adb6e08-d915-0410-941f-83917bcadc18

1153cef6c5584c459ad1781366ee80e2fbe2f9f6 authored over 15 years ago by Oliver Kohlbacher <[email protected]>

added simple denovo class structure

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4777 6adb6e08-d915-0410-9...

f0d2d12398df814276e3d2e37344928283fe9ec2 authored over 15 years ago by Andreas Bertsch <[email protected]>

added $Authors: $ below $Maintainer: $

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4776 6adb6e08-d915-0410-9...

227e686782d914f4b289e70c6d20c1d5fba65522 authored over 15 years ago by Clemens Gröpl <[email protected]>

fixed bug: peaks width zero width are eliminated

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4775 6adb6e08-d915-0410-9...

1b0cbe5b7efc66e18daac90c4a83af6ae9ca4705 authored over 15 years ago by Alexandra Zerck <[email protected]>

fixed SILACAnalyzer TOPP test (sorting issue)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4773 6adb6e08-d915-0410-9...

e461c9496eb0cfe3de5491818c2de45801019855 authored over 15 years ago by Chris Bielow <[email protected]>

FileFilter: added sort functionality for FEATUREXML and CONSENSUSXML

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4772 6adb6e08-d915-0410-9...

921f41db5d627c780f476f41f1dce21c645d8db2 authored over 15 years ago by Chris Bielow <[email protected]>

TOPPView: further improved drag-and-drop (files can now also be dropped on the empty gray workspace widget)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4771 6adb6e08-d915-0410...

286b2f5460dfbc3cdacda0011d4ecdf459f42943 authored over 15 years ago by Johannes Veit <[email protected]>

removed global data vectors from OptimizePeakDeconvolution

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4770 6adb6e08-d915-0410-9...

793128a127e2ddd83bd608e019fcdbc555d3d4f1 authored over 15 years ago by Alexandra Zerck <[email protected]>

Fixed bug in intensity histogram

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4769 6adb6e08-d915-0410-9...

26441023c9d9d27fc5a8cf670f63001cb7d0b517 authored over 15 years ago by Marc Sturm <[email protected]>

TOPPView: improved drag-and-drop (files from konqueror / windows explorer can now be dragged onto SpectrumWidgets directly)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4768 6adb6e08-d915-0410...

e60ebc00236df7d9ed42af759ee948f1ffdb347d authored over 15 years ago by Johannes Veit <[email protected]>

update OpenMP

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4767 6adb6e08-d915-0410-9...

54d05ed54f81d4c43f4b77bd7c18e5483d87136c authored over 15 years ago by Andreas Bertsch <[email protected]>

updated README

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4766 6adb6e08-d915-0410-9...

1910160c68eeacc264f97c5575e50e42d5107327 authored over 15 years ago by Marc Sturm <[email protected]>

fixed progress logging in feature finders; fixed readme

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4764 6adb6e08-d915-0410-9...

1bc236ac1662b2393eced81ead3bb5230bff1be5 authored over 15 years ago by Marc Sturm <[email protected]>

prepared for parallelization: cwt and peak shapes are no members anymore

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4763 6adb6e08-d915-0410-9...

8408b33589232c0396d64c952c05c57a870bc024 authored over 15 years ago by Alexandra Zerck <[email protected]>

Removed unnecessary progress output in wavelet feafi

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4762 6adb6e08-d915-0410-9...

f10023ac549fcae8aeac3515a5a8caba51946fbe authored over 15 years ago by Oliver Kohlbacher <[email protected]>

fixed problem with windows build due to missing erf function (switched to boost) and missing OPENMS_DLLAPI declaration in header files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4761 6adb6e08-d915-0410-9...

497a8b6c99d2e2e12f2e23c5c2975a5ea014f712 authored over 15 years ago by Stephan Aiche <[email protected]>

TOPPView: drag and drop from konqueror/explorer should work now

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4760 6adb6e08-d915-0410...

021c70a4d717078bb0f930b926910500f501b94f authored over 15 years ago by Johannes Veit <[email protected]>

Fixed preformance issue in PeakPickerCWT

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4759 6adb6e08-d915-0410-9...

f1e722d2d1b2e8c3a5b75c1997c24fd45a00b87f authored over 15 years ago by Marc Sturm <[email protected]>

changes of OpenMP support

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4758 6adb6e08-d915-0410-9...

01964b91535a2854cc594a65c7cb1bec34336164 authored over 15 years ago by Andreas Bertsch <[email protected]>

removed global vectors in OptimizePick

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4757 6adb6e08-d915-0410-9...

585c94b5cb0b799eeedbbe7598f956ca73f60322 authored over 15 years ago by Alexandra Zerck <[email protected]>

added OpenMP support

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4756 6adb6e08-d915-0410-9...

60e0fff187a2a05b6f4baba7ae0c44a33fd2574c authored over 15 years ago by Andreas Bertsch <[email protected]>

non-template interface for PeakPickerCWT (now it is possible to make it a FactoryProduct)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4755 6adb6e08-d915-0410-9...

953004b49a48ba4e24649d9e0e6e1fa9c8901422 authored over 15 years ago by Marc Sturm <[email protected]>

TOPPView: added drag and drop for spectra from spectrum browser to tab bar

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4754 6adb6e08-d915-0410...

acdafcd7de4d54b80ff00ddf239921a99db9b60d authored over 15 years ago by Johannes Veit <[email protected]>

cmake features (partly) cuda tbb openmp

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4753 6adb6e08-d915-0410-9...

4400e24f546acc83b287d0279378d061427d757e authored over 15 years ago by Rene Hussong <[email protected]>

added FindOpenMP temporary from cmake 2.6.3 until it replaced by the cmake module

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4752 6adb6e08-d915-0410-9...

cb1cb25b8101a28e04b6dcf37bc46dfb23965d3a authored over 15 years ago by Andreas Bertsch <[email protected]>

added static libraryprecedence

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4751 6adb6e08-d915-0410-9...

6bf47e0a18ea8646b69ce734cd04cc87a873e19d authored over 15 years ago by Andreas Bertsch <[email protected]>

TOPPView: fixed bug (snap factor is now recalculated when current spectrum of a layer changes in 1d view)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4750 6adb6e08-d915-0410...

0b0364e2713cf29e78cce707483a48214558a18c authored over 15 years ago by Johannes Veit <[email protected]>

SpectrumCanvas: added CTRL+ALT+T hotkey for timing measurements to 1D and 2D view

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4749 6adb6e08-d915-0410-9...

fb64c6b5bf7b31e3f5d051c566618734b3bdf966 authored over 15 years ago by Marc Sturm <[email protected]>

bugfix

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4748 6adb6e08-d915-0410-9...

57a8f1788dba4db0945b02b3799155cef50c0a2f authored over 15 years ago by David Wojnar <[email protected]>

TOPPView: fixed bug that caused whole map to be processed when TOPP tool was applied to visible data in 1d view

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4747 6adb6e08-d915-0410...

d302c491f589f81aa346ac937ba6cd644386315b authored over 15 years ago by Johannes Veit <[email protected]>

Fixed bug in OpenMS tutorial: missing tutorials

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4743 6adb6e08-d915-0410-9...

7ead57b70b12fef2bc1ef74cf118ca055a6a7bbe authored over 15 years ago by Marc Sturm <[email protected]>

added first draft version of LC-MSsim. updates to the test/documentation ... will follow soon

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4740 6adb6e08-d915-0410-9...

a176cc7646644e096ec7b27d73aa6430adcfdabd authored over 15 years ago by Stephan Aiche <[email protected]>

some more TOPPAS stuff...

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4739 6adb6e08-d915-0410...

2a5cde225d885c342574bcd45ea96a2df5849860 authored over 15 years ago by Johannes Veit <[email protected]>

TOPPView: removed linking of spectra, added some hotkeys; Minor bugfix of ListEditor

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4738 6adb6e08-d915-0410-9...

565e7633d5f3005127b70fde0578daa046065d39 authored over 15 years ago by Marc Sturm <[email protected]>

bug fix: empty values for int/float reset to 0

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4737 6adb6e08-d915-0410-9...

380f1bb4599403f1ed5ef2f4d17411772223b53c authored over 15 years ago by David Wojnar <[email protected]>

TOPPAS: drag and drop from tools list to window works now

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4736 6adb6e08-d915-0410...

512940a5effb2624e87c5264669aeba4bc83e18b authored over 15 years ago by Johannes Veit <[email protected]>

minor additions to TOPPAS

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4735 6adb6e08-d915-0410...

615c8923306356ae1fc8888b40c94d7752ecd355 authored over 15 years ago by Johannes Veit <[email protected]>

added option to skip the charge states annotated with spectra for MascotAdapterOnline submissions

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4734 6adb6e08-d915-0410-9...

6c057b1aa59a1ad23183afa0ae55fc1772635c9d authored over 15 years ago by Andreas Bertsch <[email protected]>

added another name for selected reaction monitoring, MRM (multiple reaction monitoring)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4733 6adb6e08-d915-0410-9...

e5e7a6775462f6a1e033f9cb986ed328d17280eb authored over 15 years ago by Andreas Bertsch <[email protected]>

latest achievements...

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4732 6adb6e08-d915-0410-9...

36e4cde5e550c1464c6c8598fe9fd243380645e0 authored over 15 years ago by Clemens Gröpl <[email protected]>

some more TOPPAS code.. (still not much to see though)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4731 6adb6e08-d915-0410...

cf8bab8bf15b3c67315a6334971ffd44a0988db1 authored over 15 years ago by Johannes Veit <[email protected]>

fixed for out-of-source builds

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4730 6adb6e08-d915-0410-9...

6887ca7cebfe24024673b4730f880cc053d0f856 authored over 15 years ago by Clemens Gröpl <[email protected]>

fixed ItraqQuantifier.consensusXML

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4729 6adb6e08-d915-0410-9...

60449d4619afb38b12bd91765d9957b5dbc1df52 authored over 15 years ago by Chris Bielow <[email protected]>

corrected $Maintainer:$ info for CaapEval classes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4728 6adb6e08-d915-0410-9...

780a498e1f4408ec61603d60351bc96415793ed9 authored over 15 years ago by Clemens Gröpl <[email protected]>

initial version of CaapEval - evalutates consensusXML files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4727 6adb6e08-d915-0410-9...

43e36464976fb8e68c6123390518d65c4375a3c5 authored over 15 years ago by Clemens Gröpl <[email protected]>

added rudimentary write support for MSP files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4724 6adb6e08-d915-0410-9...

71343a8e91edf1339b8a687601fb9da10188bb9a authored over 15 years ago by Andreas Bertsch <[email protected]>

improved test and added todo for real implementation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4723 6adb6e08-d915-0410-9...

5d5c3d3ec0d7ef2862f2c1113c5e21230ef6547e authored over 15 years ago by Andreas Bertsch <[email protected]>

added Size as a Filter option (was implemented but not available)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4722 6adb6e08-d915-0410-9...

959329a37e4e3bf177107db016a650cff6e2d186 authored over 15 years ago by Clemens Gröpl <[email protected]>

TOPPAS now displays a tree view of the TOPP tools

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4721 6adb6e08-d915-0410...

a562fad70dc6539309299309af876e96dddc3c69 authored over 15 years ago by Johannes Veit <[email protected]>

fixed for release mode (Maybe need a logic trainer ;-) )

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4720 6adb6e08-d915-0410-9...

0ca7e88778585f8ea5ca464316910a2394ab5e1e authored over 15 years ago by Clemens Gröpl <[email protected]>

fixed IsotopeMarker_test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4719 6adb6e08-d915-0410-...

69bb3dd3e4df148b3aa2fa4345d53887da995338 authored over 15 years ago by Chris Bielow <[email protected]>

fixed ItraqChannelExtractor.consensusXML

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4718 6adb6e08-d915-0410-9...

db35010f8bc3c37043a6ce022428badc915f3a12 authored over 15 years ago by Chris Bielow <[email protected]>

ItraqChannelExtractor: ms2 maps with no itraq intensities will not get a consensusfeature

&&
some fixes of warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS...

51dcb21aa329712a1ce22fc01d8d09acc7539516 authored over 15 years ago by Chris Bielow <[email protected]>

bug(?!): missing reference& in IsotopeMarker::apply() ?

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4716 6adb6e08-d915-0410-9...

e0829a69a4c5ab251e49aa05e3c86d368b0ed044 authored over 15 years ago by Chris Bielow <[email protected]>

renamed TEST_PRECONDITION -> TEST_PRECONDITION_VIOLATED, and added tests for new macros in ClassTest_test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4715 6adb6e08-d915-0410-9...

282762b9d4464aa627fdc4e6c43736bf59b28ae2 authored over 15 years ago by Clemens Gröpl <[email protected]>

disable some useless warnings in VS

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4714 6adb6e08-d915-0410-9...

241258eb5e3d07b046a1a3210336059cb9ca8af7 authored over 15 years ago by Chris Bielow <[email protected]>

added the first few lines of TOPPAS code...

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4713 6adb6e08-d915-0410...

6f4c8ab4bf6d94264521827defbd10d9553b0e47 authored over 15 years ago by Johannes Veit <[email protected]>

RT prediction and IDFilter improvements

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4712 6adb6e08-d915-0410-9...

df7a6e7be942a5488fcdad80a7b919c27cea884a authored over 15 years ago by Andreas Bertsch <[email protected]>

collaps equal Mascot Peptide hits into one peptide hit (only first and second rank)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4711 6adb6e08-d915-0410-9...

63b8b6fb5076dac734fe97671576a373bd15790e authored over 15 years ago by Andreas Bertsch <[email protected]>

new TEST macro TEST_PRECONDITION() - for more consistent handling of preconditions (and postconditions) in Debug vs. Release build

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4710 6adb6e08-d915-0410-9...

a8d397f40d52add3f85c367686ec82ded6e16b8d authored over 15 years ago by Clemens Gröpl <[email protected]>

force OPENMS assertions in debug and disable them in release

;;
TODO: disable them in Class tests when in release mode

git-svn-id: https://open-ms.svn.source...

835096ee2e3aa78b5c53c929be8ca765f7f0d74d authored over 15 years ago by Chris Bielow <[email protected]>

isnan revisited, hope this will build on Mac and Win, sorry

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4708 6adb6e08-d915-0410-9...

a177c46c96c605a796943ff19ab3e47f44086119 authored over 15 years ago by Clemens Gröpl <[email protected]>

Windows writes 1.#QNAN for nan (quiet not-a-number). Use precisionWrapper() to get nan always.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4707 6adb6e08-d915-0410-9...

3ebb9386e667d59fc9aacb7b5405f97361547cdd authored over 15 years ago by Clemens Gröpl <[email protected]>

forgot that one...

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4706 6adb6e08-d915-0410-9...

7ed2f1d9f0127b92c0fa3b40eb9459797beb70ec authored over 15 years ago by Clemens Gröpl <[email protected]>

minor docu updates

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4704 6adb6e08-d915-0410-9...

c7fd0ff07ea63fb4baa2fed528ff3fae48eaf3bd authored over 15 years ago by Marc Sturm <[email protected]>

FAQ and ignore list changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4703 6adb6e08-d915-0410-9...

5771e7df569254ea01a1a87a1a13f34c285af7b1 authored over 15 years ago by Marc Sturm <[email protected]>

Added SILACAnalyzer docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4702 6adb6e08-d915-0410-9...

93d36d07044240a18ac090b262870346bbb50c71 authored over 15 years ago by Marc Sturm <[email protected]>

added TOPP tests for new TextExporter -out for consensusXML

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4700 6adb6e08-d915-0410-9...

d5093f7140e27768c1bb673b86ae9449672b0bc8 authored over 15 years ago by Clemens Gröpl <[email protected]>

changed target dir of EXAMPLES executables to /bin (again to fit DLL needs)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4699 6adb6e08-d915-0410-9...

5ab792f1d86acf073982be1e885c4311a55a2349 authored over 15 years ago by Chris Bielow <[email protected]>

relocated test-binaries to /bin (DLL requirement)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4698 6adb6e08-d915-0410-9...

0723994c4c0e4becd7279eee1ce4020384135ddc authored over 15 years ago by Chris Bielow <[email protected]>

docu changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4696 6adb6e08-d915-0410-9...

732b679fb7c6a9f1b10beb0aa5668190c38369c9 authored over 15 years ago by Marc Sturm <[email protected]>

improved output for consensusXML (-out): protein identifications, unassigned peptides, map descriptions

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4693 6adb6e08-d915-0410-9...

a94f43b60b78453ecd90f62b589c1191bca71219 authored over 15 years ago by Clemens Gröpl <[email protected]>

Added second SILACAnalyzer test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4692 6adb6e08-d915-0410-9...

23953228f1b5a8897f5f75c4a955e86007de57ec authored over 15 years ago by Marc Sturm <[email protected]>

fixed some warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4690 6adb6e08-d915-0410-9...

328d91530c9e4f826f8e2c5fcb1ae9520e904971 authored over 15 years ago by Andreas Bertsch <[email protected]>

re-activated a test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4689 6adb6e08-d915-0410-9...

abf8a6793811ef60be94b70eff61276dddb101fa authored over 15 years ago by Clemens Gröpl <[email protected]>

the tests should find OpenMS.dll now

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4688 6adb6e08-d915-0410-9...

35a6d92722ec4c773ab2b6000eef6d114120baee authored over 15 years ago by Chris Bielow <[email protected]>

updated internal FAQ

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4687 6adb6e08-d915-0410-9...

6b7a3f9951caed2f3990f3a1db85a6c4b661c0a8 authored over 15 years ago by Marc Sturm <[email protected]>

added load method for idXML without documnet_id for convenience

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4686 6adb6e08-d915-0410-9...

e97ff73da89934ca6dd35d65af39d312bc1c032b authored over 15 years ago by Andreas Bertsch <[email protected]>

changes in PILIS code

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4685 6adb6e08-d915-0410-9...

f1ecaee76e75652b640c5759a321c9ae99eba928 authored over 15 years ago by Andreas Bertsch <[email protected]>

OpenMSBuildSettings.cmake creation moved to cmake/

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4684 6adb6e08-d915-0410-9...

a5108ffac7e858341f9d1c5a926c71a62dc71b60 authored over 15 years ago by Andreas Bertsch <[email protected]>

updated internal FAQ

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4680 6adb6e08-d915-0410-9...

649dbcc23687b5dd891da6cfd5401454602fb135 authored over 15 years ago by Marc Sturm <[email protected]>

mzML: CV update

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4678 6adb6e08-d915-0410-9...

8d3a6f0bfbd05bea1136da5d64b67cf421de1536 authored over 15 years ago by Marc Sturm <[email protected]>

added peptide output for consensusXML

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4676 6adb6e08-d915-0410-9...

9c8540be27f7505a52a727353c408ce030f0d9e7 authored over 15 years ago by Clemens Gröpl <[email protected]>