github.com/OpenMS/OpenMS commits | Ecosyste.ms: OpenCollective

Major code cleanup.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4901 6adb6e08-d915-0410-9...

85e6cba1f13312704b59e6a9ace385be73a04242 authored over 15 years ago by Rene Hussong <[email protected]>

Removed dependency on cutil.h for CUDA related code.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4900 6adb6e08-d915-0410-9...

ce55195ef9f6d8ef325f6616b814e73d91fe8742 authored over 15 years ago by Rene Hussong <[email protected]>

added executable helping files for compiling cuda code

will be removed as soon as cmake is adapted to cuda

git-svn-id: https://open-ms.svn.sourceforge....

07b832934dff30651382618488a8d16a8c16ce45 authored over 15 years ago by Rene Hussong <[email protected]>

Started CUDA support for Isotope Wavelet.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4898 6adb6e08-d915-0410-9...

a83116df2c53932003ffa209625bb37cbbda7f5d authored over 15 years ago by Rene Hussong <[email protected]>

IsotopeWavelet: use fast power even for 64 bit platforms.

IsotopeWavelet: use fast power even for 64 bit platforms.

Added CoupledMarrWavelet and EmgMZFit...

812566ff905672dabde7226155af91ba820e7ad5 authored over 15 years ago by Rene Hussong <[email protected]>

TOPPView: fixed performance bug (updating the spectrum browser was much too slow for large maps)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4896 6adb6e08-d915-0410...

8d3915463d449c876a48b2d4d08cd37d63bead24 authored over 15 years ago by Johannes Veit <[email protected]>

Added FFPP tutorial using TOPPView

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4895 6adb6e08-d915-0410-9...

e1141017a7ecfeeee798cbadcd1cbab3d0833399 authored over 15 years ago by Marc Sturm <[email protected]>

added PeakPicker tutorial data

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4894 6adb6e08-d915-0410-9...

940c20d860c28ffb8c326bea55137a36aeeb33b4 authored over 15 years ago by Alexandra Zerck <[email protected]>

Minor updates, mostly docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4893 6adb6e08-d915-0410-9...

1a7442c848981fe0d21387690ea62eb64649231c authored over 15 years ago by Marc Sturm <[email protected]>

mzML: updated to latest CV

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4892 6adb6e08-d915-0410-9...

0e2c5bea178d53756544545d7c1fda2b71bf76d3 authored over 15 years ago by Marc Sturm <[email protected]>

added fixed bug #2690367

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4891 6adb6e08-d915-0410-9...

ffe542567c4c96dd3e8c32d27a6e636f6aa301af authored over 15 years ago by Andreas Bertsch <[email protected]>

fixed bug #2690367; MascotAdapterOnline has no a option that allows to show all peptides found, however protein references are not complete; standard mode is only small lists and correct protein references

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4890 6adb6e08-d915-0410-9...

d0c49e7f039ebe358b55448d9b581ed4b036c41b authored over 15 years ago by Andreas Bertsch <[email protected]>

TOPPView: added color indicator to layer bar (for 1D view)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4889 6adb6e08-d915-0410-9...

d04ca073d00642cf2d06e4d48bf60700b4b3ba1f authored over 15 years ago by Marc Sturm <[email protected]>

SignedSize for Point::key

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4888 6adb6e08-d915-0410-9...

3f04ff3854883543652b0e3c9d920749f873e5ae authored over 15 years ago by Clemens Gröpl <[email protected]>

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4887 6adb6e08-d915-0410-941f-83917bcadc18

86394ad251909b6d0bf1c9f76e83dc0f7a5bbeaa authored over 15 years ago by Erhan Kenar <[email protected]>

Added TOPPView tutorial browser and some dummy pages

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4886 6adb6e08-d915-0410-9...

3a5826beb0c4637331748ebe3b7f6376868fcee5 authored over 15 years ago by Marc Sturm <[email protected]>

Fixed some warnings; updated mzML CV file

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4885 6adb6e08-d915-0410-9...

773dbf29dfdef4255a3556e065740956b2f0917e authored over 15 years ago by Marc Sturm <[email protected]>

Updated public FAQ

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4884 6adb6e08-d915-0410-9...

dda20136de106b338c9fb3a36e6d419547c6de64 authored over 15 years ago by Marc Sturm <[email protected]>

updated FAQ; some minor stuff

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4883 6adb6e08-d915-0410-9...

b6bd1910d6f27acabde162b7ce25c4e7d79645e8 authored over 15 years ago by Chris Bielow <[email protected]>

removed warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4882 6adb6e08-d915-0410...

f678a4dd6f5c4f00fb975b613dc791c675f53833 authored over 15 years ago by Johannes Veit <[email protected]>

adapted ITRAQAnalyzer

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4881 6adb6e08-d915-0410-9...

3d243b61900df3cc1f6eddb9a0ffbe9f442f237c authored over 15 years ago by Chris Bielow <[email protected]>

narf... again..

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4880 6adb6e08-d915-0410-9...

a1bc3a5e481342937fb6049ce41fd6374847d3d1 authored over 15 years ago by Chris Bielow <[email protected]>

fixed bug which forced -id_pool to be present

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4879 6adb6e08-d915-0410-9...

cbe130ae336fe52b3c39505afd9fb00de575c90f authored over 15 years ago by Chris Bielow <[email protected]>

icns files are now added in a more sophisticated and more cmake like way to the Mac OS X bundles

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4878 6adb6e08-d915-0410-9...

a0b7939ef4a87749765ed943253cd87bd9881e64 authored over 15 years ago by Stephan Aiche <[email protected]>

merged change from release 1.3 (concerning problems with MACOSX_BUNDLE_. properties - r4668)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4876 6adb6e08-d915-0410-9...

9907d7065071fa44f984913e0af7065f7d6f152c authored over 15 years ago by Stephan Aiche <[email protected]>

updated authors

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4875 6adb6e08-d915-0410-9...

703edb4dcd349618113d6cfc386cbdd145d05bf4 authored over 15 years ago by Marc Sturm <[email protected]>

Fixed some errors in docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4874 6adb6e08-d915-0410-9...

0f5188af94dbac50355b2cc5373e25812e8e1334 authored over 15 years ago by Marc Sturm <[email protected]>

updated FAQ;;

deleted unnecessary sources.cmake from TEST and EXAMPLES

git-svn-id: https://open-ms.svn.source...

ca415cbcc6298bd08cd9165a893bf505c073f42e authored over 15 years ago by Chris Bielow <[email protected]>

disabled template warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4872 6adb6e08-d915-0410-9...

5519e0f7a38c2dd1eab7d2c2f026f0afccef7edf authored over 15 years ago by Chris Bielow <[email protected]>

Reimplemented painting of 2D data. Now it should be quite fast

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4871 6adb6e08-d915-0410-9...

f2cd048b50fb5af7176339f8cec28d8d69a45b6e authored over 15 years ago by Marc Sturm <[email protected]>

Fixed IDTagger errors

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4870 6adb6e08-d915-0410-9...

c66d462ad2c6937ad584c96f08662bfb513a9a48 authored over 15 years ago by Marc Sturm <[email protected]>

Windows Users: update you CONTRIB!!

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4869 6adb6e08-d915-0410-9...

ccd3dc4628a350ce425804b8d20780e88cfeb50a authored over 15 years ago by Chris Bielow <[email protected]>

removed possibility to use environment for pool files (use -id_pool string argument now ;formerly -id_tag)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4868 6adb6e08-d915-0410-...

14b6d658ba0aa3c9c34a9f6b6414a77b668b8605 authored over 15 years ago by Chris Bielow <[email protected]>

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4867 6adb6e08-d915-0410-941f-83917bcadc18

4c75a54277fc5b648bb924dc6aa683d4b64123ec authored over 15 years ago by Erhan Kenar <[email protected]>

updated install instructions (Qt 4.3 or higher required)

;
made DepletedIDPool throw an Exception

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot...

57a1ce97c8c0da4113317bbb170c5b0742048de4 authored over 15 years ago by Chris Bielow <[email protected]>

minor runtime improvement; updated changelog

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4865 6adb6e08-d915-0410-9...

af775bfb7b85029857abe4bd60b68e9ec70099fb authored over 15 years ago by Marc Sturm <[email protected]>

fixed a warning

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4864 6adb6e08-d915-0410-9...

ddfcec903fc8f7330304adca40adf78d5048f7c6 authored over 15 years ago by Clemens Gröpl <[email protected]>

Spectrum2DCanvas: Rewritten painting of data (now scales with the displayed pixels instead of the data)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4863 6adb6e08-d915-0410-9...

c0691545e50377e8edaf2f9d3c37bbec4bcff08f authored over 15 years ago by Marc Sturm <[email protected]>

some docu & cleanup for DocumentID's

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4862 6adb6e08-d915-0410-9...

03450676a5a63db3c1d9f4c3b1ce67d9c5d38780 authored over 15 years ago by Chris Bielow <[email protected]>

introduced DocumentID tagging for TOPP tools (-id_tag flag);

ITRAQAnalyzer can already deal with it;
This might not work on linux yet...;

minor cleanup

git-...

45af882ab4ffa74a22d94d6045729968d1195fb7 authored over 15 years ago by Chris Bielow <[email protected]>

Minor speed optimizations to TOPPView 2D view (about 10% faster)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4860 6adb6e08-d915-0410-9...

1f72ab1688a5aeaaf94fe69b89e67c2b2fbaa535 authored over 15 years ago by Marc Sturm <[email protected]>

adapted checker tools to proper PHP;

removed some left over external memory stuff from File.h|C;
fixed some DLL_Linkage warnings

gi...

75b230c145a2bf38c74fa5663eea0c421f9ff42e authored over 15 years ago by Chris Bielow <[email protected]>

fixed problem with FIND_DOXYGEN_DOT

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4857 6adb6e08-d915-0410-9...

5152406d502f595ee7dcc4d28976b6ad7a0a234e authored over 15 years ago by Stephan Aiche <[email protected]>

Fixed some warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4856 6adb6e08-d915-0410-9...

de0ebcb894ef20c7caee71bc9d6cda51da89b0bc authored over 15 years ago by Marc Sturm <[email protected]>

lots of relatively boring Size/UInt/Int/SignedSize issues

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4855 6adb6e08-d915-0410-9...

938b6b36ff64605cbfbaed722522eb924980bd2c authored over 15 years ago by Clemens Gröpl <[email protected]>

more overloads for integral types

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4854 6adb6e08-d915-0410-9...

3d352aa0ee6453bfb43ad9e7314cddafa741b306 authored over 15 years ago by Clemens Gröpl <[email protected]>

Added TextImporter TOPP tool; removed unneeded cmake files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4853 6adb6e08-d915-0410-9...

9be55ee2f61ed2ddece5228efa475fa1ad7e1bcf authored over 15 years ago by Marc Sturm <[email protected]>

disabled a warning (see comments in code)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4852 6adb6e08-d915-0410-9...

1aecc697cc8e71d8d743d62aa16c6f565fcf6420 authored over 15 years ago by Clemens Gröpl <[email protected]>

added precursor MZ as metaValue mz to features (some mechanism as in PeptideIdentification)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4851 6adb6e08-d915-0410-9...

44e713237f6112032f0b65f60bf1af9b948e3b99 authored over 15 years ago by Andreas Bertsch <[email protected]>

FileInfo: added IdXML support (removed IdXMLInfo UTILS tool)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4850 6adb6e08-d915-0410-9...

8c1c6c79881cf78ec30ecd7cc440608061236743 authored over 15 years ago by Marc Sturm <[email protected]>

fixed warnings due to old parameter names

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4849 6adb6e08-d915-0410-9...

77ec753e9c72776538b7c29258f9b487d1e8e959 authored over 15 years ago by Alexandra Zerck <[email protected]>

fixed tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4848 6adb6e08-d915-0410-9...

e7083593b3747b9457a96ea7edccd102d46414fb authored over 15 years ago by Alexandra Zerck <[email protected]>

Added share/OpenMS/examples folder; Added TOPPView open dialog for examples folder

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4847 6adb6e08-d915-0410-9...

4f510bd407a65e2d1f407f03f9c2aaf3b7267282 authored over 15 years ago by Marc Sturm <[email protected]>

added first parts needed for peak width estimation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4846 6adb6e08-d915-0410-9...

456d936f182405d5ad86def9281cbf6aa3f86b59 authored over 15 years ago by Alexandra Zerck <[email protected]>

fixed typo at PeakPicker type

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4845 6adb6e08-d915-0410-9...

0e1c01a0b26fb8f4ece8f2cb1f0d9eebb5eac8d0 authored over 15 years ago by Alexandra Zerck <[email protected]>

LinearResampler: updated interface; minor other changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4844 6adb6e08-d915-0410-9...

f7c7cb5e009d9fe3bc1d42db01ca2e345bcac63d authored over 15 years ago by Marc Sturm <[email protected]>

MorphologicalFilter: updated interface; several minor other changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4843 6adb6e08-d915-0410-9...

859a7683db2732b5b1fa23f79f7715b8d36721af authored over 15 years ago by Marc Sturm <[email protected]>

made naming scheme of doc targets consistent

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4842 6adb6e08-d915-0410-9...

9c072befb569627b928a3f191da416b2f95b7b64 authored over 15 years ago by Chris Bielow <[email protected]>

fixed generation of documentation on Windows &&

renamed doc targets (all prefixed by doc_ now) &&
minor typos & cleanup

git-svn-id: https://open...

dfc1c514979401a9abf0d2cd8b1db41f2974a692 authored over 15 years ago by Chris Bielow <[email protected]>

updated tutorial images and removed typos

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4840 6adb6e08-d915-0410-9...

d409a75832a797ae627b7a658e7bba908ecabd34 authored over 15 years ago by Alexandra Zerck <[email protected]>

MzML: updated to latest mapping file change

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4839 6adb6e08-d915-0410-9...

0958ed18f77897970ed4bde31cd1db7a26137562 authored over 15 years ago by Marc Sturm <[email protected]>

added Cuda and TBB libs and includes to main dependencies

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4838 6adb6e08-d915-0410-9...

5de7adba09b5da69db6d981c98ced20d54f3c35f authored over 15 years ago by Andreas Bertsch <[email protected]>

dependencies-strip : adapted to cmake, operates on depend.make files now.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4837 6adb6e08-d915-0410-9...

09000d124d94e336e213f6ec425114a39402e18b authored over 15 years ago by Clemens Gröpl <[email protected]>

Added StablePairFinder, which is now used by FeatureLinker instead of DelaunayPairFinder. Grouping can consider charge now, so we have some parameter changes. MapAligner will soon be modified accordingly too. Unit and tool tests should work.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4836 6adb6e08-d915-0410-9...

96dc3823e274f3be9c19ea91490024327f71e16f authored over 15 years ago by Clemens Gröpl <[email protected]>

added a filter for consensusxml: by size of consensusfeatures

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4835 6adb6e08-d915-0410-9...

c57849a8dea0201a0b65a0f02f9bd7355ffdd957 authored over 15 years ago by Clemens Gröpl <[email protected]>

fixed some warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4834 6adb6e08-d915-0410-9...

9b778831df96034b9ab28292c390606983041487 authored over 15 years ago by Marc Sturm <[email protected]>

MzML: updated to new mapping file; Native ID type is now stored in SourceFile instead of ExperimentSettings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4833 6adb6e08-d915-0410-9...

0270ea1c38015fe036d9aa39f755117be69a2d21 authored over 15 years ago by Marc Sturm <[email protected]>

mzML: updated to latest schema version

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4832 6adb6e08-d915-0410-9...

37e5be2290657f5491e5ef414901821bf44cc75b authored over 15 years ago by Marc Sturm <[email protected]>

added simple cross validation implementation for PILIS

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4831 6adb6e08-d915-0410-9...

e2800cc07d550d0565391f64ded50fe05840926c authored over 15 years ago by Andreas Bertsch <[email protected]>

mzML: updated to latest CV version

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4830 6adb6e08-d915-0410-9...

ec5704ecbef594d0bc4fe4e9f23533641f990b90 authored over 15 years ago by Marc Sturm <[email protected]>

added MRMFragmentSelection

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4828 6adb6e08-d915-0410-9...

5d1c4da9dfe6f67853c8974cc4697aa672ef0c0d authored over 15 years ago by Andreas Bertsch <[email protected]>

Cleaning up a bit

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4827 6adb6e08-d915-0410-9...

a7276058a84433306ec71d5045f1ca27bc4ba000 authored over 15 years ago by Marc Sturm <[email protected]>

removed warning when openmp is not activated

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4826 6adb6e08-d915-0410-9...

61564aadc0dcd895b4c2e7b98297da03e4336b5b authored over 15 years ago by Chris Bielow <[email protected]>

updated changelog

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4825 6adb6e08-d915-0410-9...

b9c954716f01c7b79a898a8d38bb4478dd687435 authored over 15 years ago by Andreas Bertsch <[email protected]>

added real MRM feature finder; very simple but much better than FeatureFinderMRM and therefore replaces this TOPP-tool; now implemented directly in FeatureFinder TOPP-tool; works well on ABI/SCIEX 4000 QTrap data

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4824 6adb6e08-d915-0410-9...

dc88b620053fed69dcade6328b54c1041db9f69e authored over 15 years ago by Andreas Bertsch <[email protected]>

GaussFilter: minor changes; SavitzkyGolayFilter: cleaned up interface and improved meta data handling; PeakPicker: removed base class

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4823 6adb6e08-d915-0410-9...

187ff8d8817bee87876aa70f6cff2a86769096ed authored over 15 years ago by Marc Sturm <[email protected]>

Improved meta data handling and interface of GaussFilter

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4822 6adb6e08-d915-0410-9...

5915a8812ac67c9f8ecdf2084e61108a47d2e5d5 authored over 15 years ago by Marc Sturm <[email protected]>

added first draft of peakpicker TOPP tutorial

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4821 6adb6e08-d915-0410-9...

c71938ca92cd4430810b70045ebed4b19247f939 authored over 15 years ago by Alexandra Zerck <[email protected]>

added MRM Featurefinder skeleton to FeatureFinder TOPP-tool

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4820 6adb6e08-d915-0410-9...

dea3029649f28b7ea2ea8228de1f128446a26276 authored over 15 years ago by Andreas Bertsch <[email protected]>

improved output of progress in PeakPicker (threadsafe)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4819 6adb6e08-d915-0410-9...

852c94785694ac494e697203e24410b4a8e57770 authored over 15 years ago by Chris Bielow <[email protected]>

docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4818 6adb6e08-d915-0410-9...

b15bc3bd10d03db8f5cc11ebe0edbcb84a442062 authored over 15 years ago by Clemens Gröpl <[email protected]>

FFPP: changed factory name to 'centroided'; PeakPickerCWT: improved handling of meta data, optimized use of vectors (reserve/resize); updated PrecursorVisualizer; MzML: improved handling of 'selectedIon' tag; DocumentIdentifier: fixed uninitialized member

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4817 6adb6e08-d915-0410-9...

9c01cf39e08342d12c798582766fa44737c551ff authored over 15 years ago by Marc Sturm <[email protected]>

updated Cuda and tbb support, should work on most platforms now

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4816 6adb6e08-d915-0410-9...

8659d246dff708791a5b850c7740eac8a8b8acb8 authored over 15 years ago by Andreas Bertsch <[email protected]>

fixed doc Latex searching for case-sensitive systems

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4815 6adb6e08-d915-0410-9...

82a5278cdd010887167b10ec5ded68649142f089 authored over 15 years ago by Andreas Bertsch <[email protected]>

fixed one test and a bugfix bug

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4814 6adb6e08-d915-0410-9...

8c2b6380393aea13c331c769e4a44d06c4ffd12c authored over 15 years ago by Chris Bielow <[email protected]>

added FindLATEX.cmake, as apparently CMake 2.6.0 doesnt have it

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4812 6adb6e08-d915-0410-9...

e33a1074d7271f9f2fb62f4f7adbd883c9146d30 authored over 15 years ago by Chris Bielow <[email protected]>

Todo changesQ

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4811 6adb6e08-d915-0410-9...

45351265d45d4f53ca563ed6e0819fbd8f094eea authored over 15 years ago by Marc Sturm <[email protected]>

Added support for several precursors per spectrum

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4810 6adb6e08-d915-0410-9...

284f5d5570405cf8708757911ce9f7e532abf104 authored over 15 years ago by Marc Sturm <[email protected]>

fixed openMP issue on windows (include omp.h when using OpenMP!!!!!!!!);

fixed broken Class listing in FEATUREFINDER/sources.cmake (be more careful with cuda sources)
fix...

5c5366c0c8c9e4460c4d087da68d831bf628ce49 authored over 15 years ago by Chris Bielow <[email protected]>

documentation targets only available if doxygen&Co are found;

fixes to openMP under Windows - might still not work;
some cleanup;

git-svn-id: https://open-ms...

0ddd5e1a2996ff012940f00badacec1273ec1d90 authored over 15 years ago by Chris Bielow <[email protected]>

added output for quality

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4806 6adb6e08-d915-0410-9...

d1837690dada046852f629d27951eda49d4e05b3 authored over 15 years ago by Clemens Gröpl <[email protected]>

removed ms_level as function parameter for pp

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4805 6adb6e08-d915-0410-9...

b90609709ee1ad9223abf0b3f170537346fbb9e0 authored over 15 years ago by Alexandra Zerck <[email protected]>

reduced number of non-advanced parameters for peakpicker

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4804 6adb6e08-d915-0410-9...

7582de996f64bd5aa4ded82f6f4601db43c40389 authored over 15 years ago by Alexandra Zerck <[email protected]>

added newline at end of file

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4803 6adb6e08-d915-0410-9...

5f4dd987e00fe86c46fbb2c1fd35dd4a34a70082 authored over 15 years ago by Chris Bielow <[email protected]>

removed External Memory support

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4802 6adb6e08-d915-0410-9...

ce02b6f5407df2d5f1369c0d195c3ca0da6652ac authored over 15 years ago by Chris Bielow <[email protected]>

more specific messages when carriage return is detected (for Windows users which tend to introduce CRLF line endings)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4801 6adb6e08-d915-0410-9...

3a45173a5e30237a6f1e6f4ccc3e103bae5a3691 authored over 15 years ago by Clemens Gröpl <[email protected]>

removed some debug output.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4800 6adb6e08-d915-0410...

33ecaae3ed43fc9a5c1b68ee2489f1b618807b54 authored over 15 years ago by Johannes Veit <[email protected]>

changed OpenMP support (Intel, GCC, MSVC)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4798 6adb6e08-d915-0410-9...

7db8636a7d6460ac6b28f59854cf76d514497df9 authored over 15 years ago by Chris Bielow <[email protected]>

trying to make drag-and-drop work on mac

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4797 6adb6e08-d915-0410...

f21224e1e7c7f5a8fa010f99e733c523ec6a6edc authored over 15 years ago by Johannes Veit <[email protected]>

getMZ/setMZ is now used for precusor peaks

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4796 6adb6e08-d915-0410-9...

9d0eb54ce158724fbf09babc2bbbe1d11dd265eb authored over 15 years ago by Marc Sturm <[email protected]>