github.com/OpenMS/OpenMS commits | Ecosyste.ms: OpenCollective

fixes of tests and mecker-errors

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5003 6adb6e08-d915-0410-9...

a703e3212c1a393200ebd042f4184c8d3f5fe379 authored over 15 years ago by Andreas Bertsch <[email protected]>

Fixed some checker errors

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5002 6adb6e08-d915-0410-9...

43a95321276389a41f9b071ec67a4302d646d52e authored over 15 years ago by Marc Sturm <[email protected]>

Added precursor meta data

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5001 6adb6e08-d915-0410-9...

85c902bc1b024bfd7e4481b6731a26711ea8847b authored over 15 years ago by Marc Sturm <[email protected]>

Hi Chris, is was frist :) [fixed bug in TOPPView meta data viewing]

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5000 6adb6e08-d915-0410-9...

34f72d6be562158096d113b37a476618f0fe3eea authored over 15 years ago by Marc Sturm <[email protected]>

fix for remaining truncation widows warnings ig

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4999 6adb6e08-d915-0410-9...

d3236a189bddf6230e7a9235a050bd2cf1d34419 authored over 15 years ago by Mathias Walzer <[email protected]>

fixed TOPPDocumenter

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4998 6adb6e08-d915-0410-9...

dc6353b8ea085e4daa7c9898077c1c8c32cfc478 authored over 15 years ago by Marc Sturm <[email protected]>

scoring function on gpu works now correctly

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4997 6adb6e08-d915-0410-9...

df2490d500a8e67b157f740f236cba8a47318466 authored over 15 years ago by Rene Hussong <[email protected]>

some more TOPPAS code

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4996 6adb6e08-d915-0410-9...

5b7bfd597df38252a5f605825a6e6992a6fa5868 authored over 15 years ago by Johannes Veit <[email protected]>

more efficient implementation of GPU scoring function

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4995 6adb6e08-d915-0410-9...

8ca651e12a9305a86a36ce80da8fe469d966e8e2 authored over 15 years ago by Rene Hussong <[email protected]>

removed unnecessaary presampling for GPU

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4994 6adb6e08-d915-0410-9...

56b3c0725329725c9793b2d922a1735895d9e2d7 authored over 15 years ago by Rene Hussong <[email protected]>

removed debug output and added docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4993 6adb6e08-d915-0410-9...

222673ea4a03a4eae55f809e83f2c8ca1448893c authored over 15 years ago by Alexandra Zerck <[email protected]>

correct failed test FF3 (due to changed constant)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4992 6adb6e08-d915-0410-9...

76782f4dbc308dfa1e66752dd3a0c55bde1ad5ff authored over 15 years ago by Rene Hussong <[email protected]>

fixed warning; fixed windows compile bug for experimental static member variable

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4991 6adb6e08-d915-0410-9...

1f91a41777139c4458480673f99e0eebfd728133 authored over 15 years ago by Rene Hussong <[email protected]>

some more TOPPAS code

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4990 6adb6e08-d915-0410...

68d64b1c21a993f2c103fb004213bccb05334eb7 authored over 15 years ago by Johannes Veit <[email protected]>

some more TOPPAS code

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4989 6adb6e08-d915-0410...

9e19fbdb2f435e46ca0bda88283bc3828b76cc5b authored over 15 years ago by Johannes Veit <[email protected]>

TOPPBase::getToolList() now returns a Map<String,StringList> of tools together with lists of their types

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4988 6adb6e08-d915-0410...

586eb743cbcd2f0e4bdfd2a3120fbf8c968f3d69 authored over 15 years ago by Johannes Veit <[email protected]>

fixed fatal bug in IsotopeWavelet.h (Windows)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4987 6adb6e08-d915-0410-9...

d27abf380c7bfd097c63a8898c14c3e1eebd369f authored over 15 years ago by Chris Bielow <[email protected]>

Renamed CaapEval* to MapAlignmentEvaluation*

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4986 6adb6e08-d915-0410-9...

afa5a52201e127c239a93816f90a051082fe5b47 authored over 15 years ago by Katharina Albers <[email protected]>

removed seg fault for cuda if spectrum features only 0 intensities (gpu_index/cuda_sort failed)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4985 6adb6e08-d915-0410-9...

9f998f5b6588c114e6248e543929d495558e11cf authored over 15 years ago by Rene Hussong <[email protected]>

mzML: updated to latest CV

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4984 6adb6e08-d915-0410-9...

d6b072db6fe0cb089a24fa484ebd46578b50d875 authored over 15 years ago by Marc Sturm <[email protected]>

continued PeakWidthEstimator

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4983 6adb6e08-d915-0410-9...

7541bd164bce26052395f1442c3d2cd7ed1ee0bf authored over 15 years ago by Alexandra Zerck <[email protected]>

Fixed some of my windows warnings; Fixed LCMSSim test for 64 bit

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4982 6adb6e08-d915-0410-9...

b4a89459d98c45d8c9153cab331067af7179f823 authored over 15 years ago by Marc Sturm <[email protected]>

isotpe wavelet ff: removed unnessary parameter rt_interleave; some parameters are now advanced; renamed ffs

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4981 6adb6e08-d915-0410-9...

e79e4302a2849ced97dd36988eec390419b6b52d authored over 15 years ago by Rene Hussong <[email protected]>

mzML: updated to latest CV, mapping file and schema (hopefully for the last time)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4980 6adb6e08-d915-0410-9...

29828ea13a55d3a168aecf5433ebaccd38a70ecd authored over 15 years ago by Marc Sturm <[email protected]>

fixed some Size/Uint stuff

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4979 6adb6e08-d915-0410-9...

01e00104e1be743b20c80ccb7904217f6c02c808 authored over 15 years ago by Chris Bielow <[email protected]>

fixed number of warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4978 6adb6e08-d915-0410-9...

fd50124ac6c963b0bb8977ff7e7fbbdd3b7e37d0 authored over 15 years ago by Andreas Bertsch <[email protected]>

rene: remvoved (hopefully) all my size_t to uint warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4977 6adb6e08-d915-0410-9...

c8263c5d0f931659e194a9d4331eb3cfc46dbda4 authored over 15 years ago by Rene Hussong <[email protected]>

some more performance measurement code

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4976 6adb6e08-d915-0410-9...

7317073919c4dd91fe245050e1fb4ebe77f1d0c4 authored over 15 years ago by Marc Sturm <[email protected]>

Added some more debug code

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4975 6adb6e08-d915-0410-9...

0ce7fea159f28c5397b9a69bed3228ee90f330d2 authored over 15 years ago by Marc Sturm <[email protected]>

Removed some tmp code

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4974 6adb6e08-d915-0410-9...

dd3e060cb4c1bd173c0917fbbdd8cfd76a98a625 authored over 15 years ago by Marc Sturm <[email protected]>

Added support for better timing

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4973 6adb6e08-d915-0410-9...

b4bdaea90bfbeed62ab31c8c08841b144e9afca8 authored over 15 years ago by Marc Sturm <[email protected]>

TOPPView: Fixed crash when projections are enabled, but no peak is in visible area

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4972 6adb6e08-d915-0410-9...

28ec7bbc56930bad9b89c3b67414a097a7b2d7ac authored over 15 years ago by Marc Sturm <[email protected]>

adapted code from wavelet_fit ff to work with novel isotope wavelet

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4971 6adb6e08-d915-0410-9...

c8262a1c2641fe02d966c3b8f4dc04dede248a79 authored over 15 years ago by Rene Hussong <[email protected]>

removed unnecessary debug output

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4970 6adb6e08-d915-0410-9...

ca7144cd2a4efac01fbe2ec4310caf283b1dcc77 authored over 15 years ago by Chris Bielow <[email protected]>

corrected progress bar update ff isotope wavelet

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4969 6adb6e08-d915-0410-9...

a639b4f718620a6a3f667d74f9476c9ff7e01e88 authored over 15 years ago by Rene Hussong <[email protected]>

corrected 2 tests for isotope wavelet

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4968 6adb6e08-d915-0410-9...

1af8bcf0de53fb601e5792d48ab82630f1b6ef93 authored over 15 years ago by Rene Hussong <[email protected]>

changed protein accessions list at peptide hits behaviour

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4967 6adb6e08-d915-0410-9...

bd99354e644e2240f312ac920883dbb1c52f24a8 authored over 15 years ago by Andreas Bertsch <[email protected]>

fixed warning

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4966 6adb6e08-d915-0410-9...

e30982882f6b470f4d78859ca34c6a98be0f6d4f authored over 15 years ago by Andreas Bertsch <[email protected]>

Holla die Waldfee, jetzt kommt das Freitagabend-Update erst am Sonntag, wo soll dies noch hinführen?

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4965 6adb6e08-d915-0410-...

1d1a1ad50dffeda358c9e2a88afcf0d0e8b87d5b authored over 15 years ago by Ole Schulz-Trieglaff <[email protected]>

changed file ending for pepXML

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4964 6adb6e08-d915-0410-9...

1056226b35049d313b3c65d6abcdd53cb48c4e0c authored over 15 years ago by Chris Bielow <[email protected]>

added threads option to the TOPPBase_test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4963 6adb6e08-d915-0410-9...

bc2f5b24c825d63138d085a8949ebeff033e033b authored over 15 years ago by Andreas Bertsch <[email protected]>

added threads option to TOPPBase and removed private threads options of XTandemAdapter and OMSSAAdapter

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4962 6adb6e08-d915-0410-9...

6aba47796635f7caa62fff2d52f1a7e13aa2a424 authored over 15 years ago by Andreas Bertsch <[email protected]>

added conversion check (idXML to (pepXML and nothing else))

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4961 6adb6e08-d915-0410-9...

dea136238126bf19b828cc69bef223125ee2808d authored over 15 years ago by Chris Bielow <[email protected]>

added idXML --> pepXML support (very basic, kudos to Andreas for the actual code)

;;
some minor fixes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4960 ...

837fd975850daf9b1d5dc745ffb694c8ba48c0c2 authored over 15 years ago by Chris Bielow <[email protected]>

added min and max m/z for ion selection

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4959 6adb6e08-d915-0410-9...

8a6e25ee4ae521649b1919d526ca9463c3b624c4 authored over 15 years ago by Andreas Bertsch <[email protected]>

Finished displaying coordinates on the widgets for 1D and 2D view

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4958 6adb6e08-d915-0410-9...

669760b54e8be796cceb2b06112b1cc715854cde authored over 15 years ago by Marc Sturm <[email protected]>

novel scoring function for isotope wavelet and clustering scheme also for gpu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4957 6adb6e08-d915-0410-9...

df5d38bfb973fdd21042c8508f11bb6c49a7c44b authored over 15 years ago by Rene Hussong <[email protected]>

Added displying of coordinates on widget to 1D and 2D view

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4956 6adb6e08-d915-0410-9...

07c632ef67b35a11f2e2ba98bf7bc203229f3409 authored over 15 years ago by Marc Sturm <[email protected]>

corrected FindTBB to novel MT nomenclature

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4953 6adb6e08-d915-0410-9...

7ae74a07a02616ade5a19dafdf8abe080eb7226e authored over 15 years ago by Rene Hussong <[email protected]>

changed TODOs

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4952 6adb6e08-d915-0410...

e42e5628a756842ea25502cf2f0799af96a56f1e authored over 15 years ago by Johannes Veit <[email protected]>

Renamed some cmake variables

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4951 6adb6e08-d915-0410-9...

528e30d798d622d88f5c9eea0e85830bd144bfc4 authored over 15 years ago by Marc Sturm <[email protected]>

removed debugging information

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4950 6adb6e08-d915-0410-9...

e544eedcb561df84ccd4b0a2b8f9458a7df8c9c3 authored over 15 years ago by Rene Hussong <[email protected]>

novel scoring function for isotope wavelet (only cpu); added rejection criterion based on unplausible intensities (only cpu); corrected clustering step (cpu and gpu); corrected lambda factors (cpu and gpu)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4949 6adb6e08-d915-0410-9...

f1cdc197e5d496cb4798ea66f6f50a909bd616eb authored over 15 years ago by Rene Hussong <[email protected]>

mzML: Fixed minor bug

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4948 6adb6e08-d915-0410-9...

e5a68bbd2e455d4b72a38af3a0e6b1e4e782fdaa authored over 15 years ago by Marc Sturm <[email protected]>

fixed IsotopeWavelet!

Windows should build again...
(Hint: use Constants::PI instead of M_PI ;;
use boost::math::tgamma...

96e65eba20c28d1f915c577b1de79ad0160a4d8c authored over 15 years ago by Chris Bielow <[email protected]>

Some usability improvements

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4946 6adb6e08-d915-0410-9...

9bc8d4af205853e4604420f93b0cd9df9f9270cf authored over 15 years ago by Marc Sturm <[email protected]>

updated a TOPP tutorial

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4945 6adb6e08-d915-0410-9...

036dff73a44473b77ea8977b1f9c42a678454ac0 authored over 15 years ago by Chris Bielow <[email protected]>

temporarily removed FeatureFinderAlgorithmIsotopeWavelet_test from execution; will be reactivated as soon as generic wavelet framework is available

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4944 6adb6e08-d915-0410-9...

8889d02c47ab0ee1b9936786a81c790b6003891f authored over 15 years ago by Rene Hussong <[email protected]>

removed obsolete subtest for isotope wavelet

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4943 6adb6e08-d915-0410-9...

af517858730899e48d3e507cf4de85f8194194f5 authored over 15 years ago by Rene Hussong <[email protected]>

removed severe bug: mixing of map and multimap iterators

(only discovered in STL debug mode)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open...

0c9f073cb9f75495c7ed550c54ce0c22491bc9f1 authored over 15 years ago by Rene Hussong <[email protected]>

Replaced xpm images by png images (the Qt resource system is used for that now)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4941 6adb6e08-d915-0410-9...

8d983d97b662539c1cd744ae058dc2be9232e686 authored over 15 years ago by Marc Sturm <[email protected]>

Removed unnessary file

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4940 6adb6e08-d915-0410-9...

c22cfeb16983107833e0ca0a5276768ff6bf10ce authored over 15 years ago by Rene Hussong <[email protected]>

removed several warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4939 6adb6e08-d915-0410-9...

9ccb373e9caeb70ceb78c9f45a98518a3cb53ad6 authored over 15 years ago by Rene Hussong <[email protected]>

Cleaned up chaos after reorganization of TOPP tutorial

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4938 6adb6e08-d915-0410-9...

cb0d71207addb2866798913c2c386fc9a7420cc2 authored over 15 years ago by Marc Sturm <[email protected]>

corrected bug affecting TBB without CUDA caused by CMakeCache

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4937 6adb6e08-d915-0410-9...

73b8777ecc7a7fd111e25f9c09c80eb269a84954 authored over 15 years ago by Rene Hussong <[email protected]>

Adjusted preprocessor macros to cmake configuration

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4936 6adb6e08-d915-0410-9...

a3cd45d4bc2592ad7c57be51e55cccede7e65239 authored over 15 years ago by Rene Hussong <[email protected]>

Removed several warnings;

added TBB support

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4935 6a...

1f1efc57473393aaa328122776714d58a4328ffe authored over 15 years ago by Rene Hussong <[email protected]>

adapted cmake to work properly with cuda (linux, 64bit)

had to remove pedantic compiler option due to cuda;
should be fixed before next release

git-svn-...

003c397ca29ffb47de23fdbffdb5ffa00e8f744b authored over 15 years ago by Rene Hussong <[email protected]>

added additional files for FindCuda

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4933 6adb6e08-d915-0410-9...

dfcbc4cbe34b5579cb468fc8ef961ff16c306d0b authored over 15 years ago by Rene Hussong <[email protected]>

Added conversion script for gmake to cmake for cuda files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4932 6adb6e08-d915-0410-9...

1353bdd9f67c34885afc64126954ffb72d389aaa authored over 15 years ago by Rene Hussong <[email protected]>

adapted to prior svn version

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4931 6adb6e08-d915-0410-9...

a01c06e2eb332515c3d1f25d8891182e652797c2 authored over 15 years ago by Rene Hussong <[email protected]>

adapted the texture version

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4930 6adb6e08-d915-0410-9...

d7cb393f6c40f07c1be43a57c4e8db6f85e2a338 authored over 15 years ago by Rene Hussong <[email protected]>

Removed unused parameter 'map' from 'mergeFeatures'

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4929 6adb6e08-d915-0410-9...

998089163cd3f253f0281b1766caea17ece02fcc authored over 15 years ago by Rene Hussong <[email protected]>

changed ini file setup

removed lgamma evaluation at 0

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/O...

64cbaa5971537ca09f9fe2ae56ece906dda7f0fd authored over 15 years ago by Rene Hussong <[email protected]>

updated isotope wavelet test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4927 6adb6e08-d915-0410-9...

b0f3a214461cd900f903b0118b7adff36dd6f483 authored over 15 years ago by Rene Hussong <[email protected]>

seems to work (both: cpu and gpu)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4926 6adb6e08-d915-0410-9...

ea0939c2ca85d85c6b2d4a19cf835ef6cf7df0ee authored over 15 years ago by Rene Hussong <[email protected]>

some minor improvements regarding the cpu speed

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4925 6adb6e08-d915-0410-9...

c3ad62f8b25aed9f7103165d436332aa3dd0bd65 authored over 15 years ago by Rene Hussong <[email protected]>

GPU/CPU versions seem to work

no memory errors checked by now

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/...

fa4b9ca75265f19a04d6882e89edf9a60e190755 authored over 15 years ago by Rene Hussong <[email protected]>

fixed, fixed and fixed again.

a lot of debugging information is in there.

git-svn-id: https://open-ms.svn.sourceforge.net/svnr...

f5066f439d20a39afc1894b854818650ca39c11d authored over 15 years ago by Rene Hussong <[email protected]>

added missing files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4922 6adb6e08-d915-0410-9...

a3a84ea03f4b64b57625d39c9b5cd8cd23819865 authored over 15 years ago by Rene Hussong <[email protected]>

merge (TBB) seems to work

code cleaned up
commented out extendBox (seems to be unnecessar, test Example in source/test/data...

7d90ef6a923ea85e6d5e3e9448fce99d0c1426f7 authored over 15 years ago by Rene Hussong <[email protected]>

Merging (TBB) seems to work

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4920 6adb6e08-d915-0410-9...

7c6da23717c857ff05a5bbf254bdb5885f83b0a1 authored over 15 years ago by Rene Hussong <[email protected]>

removed bug in cpu transform (wrong derivative)

now cpu (with getValueByLambdaExact) and gpu produce the same result

git-svn-id: https://open-ms...

008a1db01fe5add0c3ec1e1844dc8a1e3d55d96b authored over 15 years ago by Rene Hussong <[email protected]>

minor correction on parameters

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4918 6adb6e08-d915-0410-9...

4e0004ce1af4132f8f9c2a5b447f2abe6b195eef authored over 15 years ago by Rene Hussong <[email protected]>

corrected some minor stuff

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4917 6adb6e08-d915-0410-9...

ea08277c93bd7c90f58ccbdd0fa5fd1c2f4593f1 authored over 15 years ago by Rene Hussong <[email protected]>

Code clean up.

Simplified function definitions and removed old data structures.
Introduced novel parameters.

gi...

7181a57b88d68c8d2fd0bb9b655677891fb7f53b authored over 15 years ago by Rene Hussong <[email protected]>

TBB seems to work with different CUDA cards

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4915 6adb6e08-d915-0410-9...

06fbfde88fe16f7b40c4558594203f342f08f21f authored over 15 years ago by Rene Hussong <[email protected]>

cleaned up code;

adapted configure s.t. tbb can only be used in conjuction with cuda

git-svn-id: https://open-ms....

58e2d5d30208304519886715d1271bbbe0e0a6e9 authored over 15 years ago by Rene Hussong <[email protected]>

removed debug output and 'trunc'.

both, cpu and gpu, seem to work.
need for code cleanup

git-svn-id: https://open-ms.svn.sourcefor...

4174485619e3aebd2bc8a5874644490d27fc3857 authored over 15 years ago by Rene Hussong <[email protected]>

Added the transform spectrum class

GPU and CPU produce both the same result for wavelet transform
Code still chaotic

git-svn-id: ht...

fa909efe6c8a88ff1e49b86fe37063fe3c146f88 authored over 15 years ago by Rene Hussong <[email protected]>

removed max_intens for clustering; reduces the computational load

caused by RB-tree traverses

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/Open...

85bed86660ccc5f70a2e1a39773b07490caf5279 authored over 15 years ago by Rene Hussong <[email protected]>

a first try on a combination of cuda and tbb

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4910 6adb6e08-d915-0410-9...

9d3e2261aef7781d5d6789c987ea6d3ceb124d8f authored over 15 years ago by Rene Hussong <[email protected]>

changed cutoff constants according to maple's fitted function

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4909 6adb6e08-d915-0410-9...

6bfe8288ea13eaaa2448ee6cf95eff2f603b36fd authored over 15 years ago by Rene Hussong <[email protected]>

reenabled automated switch between shared and texture memory usage

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4908 6adb6e08-d915-0410-9...

8fca08a53938c6839f03d8db7511d72fc28e8320 authored over 15 years ago by Rene Hussong <[email protected]>

made a lot of changes regarding the peak_cutoff parameter

=> CHECK AGAIN!!!!
extendBox has been commented out, since the too short extension seems
to be ca...

92347d14e0291942db9a35100dc0a7006afa3191 authored over 15 years ago by Rene Hussong <[email protected]>

added automated decision between shared and texture memory usage

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4906 6adb6e08-d915-0410-9...

7b3e75f3500f4cb3730ca9deb65d49ef119bd771 authored over 15 years ago by Rene Hussong <[email protected]>

removed sigsegvs for too short spectra (consisting of 1 or 2 data points)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4905 6adb6e08-d915-0410-9...

e822985391279deee0fb4615a725777493422ae1 authored over 15 years ago by Rene Hussong <[email protected]>

adapted isotope wavelet feature finder implementation to novel cpu/gpu

makefile.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4904 6adb6e08-d...

df937ba1b562bfe3c043b55a146ad8e6b1463e97 authored over 15 years ago by Rene Hussong <[email protected]>

fixed cuda compile porblems

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4903 6adb6e08-d915-0410-9...

91b94909574677bb3c94b6474ea232c9b4439ed2 authored over 15 years ago by Rene Hussong <[email protected]>

removed additional ;

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@4902 6adb6e08-d915-0410-9...

31b05c56cab083eab8ee63465996c45c61d7e5f0 authored over 15 years ago by Rene Hussong <[email protected]>