github.com/OpenMS/OpenMS commits | Ecosyste.ms: OpenCollective

** restricted update of ProgressLogger to 1 second intervals (this greatly improves runtime of e.g. FileInfo with progress under windows - 17sec -> 11sec)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5555 6adb6e08-d915-0410-9...

a56808315bc7c8e95f5dc834a050b65830d5e082 authored over 15 years ago by Chris Bielow <[email protected]>

added note to install instructions (linux, mac os x) that contrib pathes should not contain any spaces

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5552 6adb6e08-d915-0410-9...

d0973b14eb003e6e18801bb3918200f699cadf98 authored over 15 years ago by Stephan Aiche <[email protected]>

** fixed two remaining tests..

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5551 6adb6e08-d915-0410-9...

85305b2f025cb3c35bbb71a659cd631a340d2fde authored over 15 years ago by Chris Bielow <[email protected]>

** fixed GaussFilter_test.C

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5550 6adb6e08-d915-0410-9...

d4a8eeed4eb6ef036e4738fb0cb593d946505b73 authored over 15 years ago by Chris Bielow <[email protected]>

** improved output format of FileInfo

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5549 6adb6e08-d915-0410-9...

05351ab787e5aae46af24b93319e80a94bb18854 authored over 15 years ago by Chris Bielow <[email protected]>

** some docu improvements & different error handling for Gauss-Filter

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5545 6adb6e08-d915-0410-9...

61a2cda5092cbb214ff62a8d7d63361cbf2d686e authored over 15 years ago by Chris Bielow <[email protected]>

todo change

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5544 6adb6e08-d915-0410-9...

ff21dffff2d987b89f7d6d8f9df7a186cd88d20e authored over 15 years ago by Marc Sturm <[email protected]>

Added todo

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5543 6adb6e08-d915-0410-9...

9edcf6b042993d22bb0b3ac695d38d3ec5af60f3 authored over 15 years ago by Marc Sturm <[email protected]>

fixed last commit

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5542 6adb6e08-d915-0410-9...

491e1ee76f429664fdd8d42e694456534e477b67 authored over 15 years ago by Alexandra Zerck <[email protected]>

some changes in dt and rt predictions

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5541 6adb6e08-d915-0410-9...

821ba565e483cf6d628eddbc5c6700cc67ee36c5 authored over 15 years ago by Alexandra Zerck <[email protected]>

added test and fixed small bug

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5540 6adb6e08-d915-0410-9...

b93f875fbfc8fd570ddd55e23dd3501a52a5f434 authored over 15 years ago by Alexandra Zerck <[email protected]>

bugfix during xic calculation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5539 6adb6e08-d915-0410-9...

bcdcfeeaf86e2b55d24ccdc77a9ac71131f7ccf5 authored over 15 years ago by Alexandra Zerck <[email protected]>

mzML: added 'absorbance unit' to intensity terms

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5538 6adb6e08-d915-0410-9...

ea777c949736da3ac6b0c45e447c0a3c208ef7c1 authored over 15 years ago by Marc Sturm <[email protected]>

mzML: updated to latest CV (psi-ms.obo and unit.obo)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5537 6adb6e08-d915-0410-9...

debfdbd8ad35dbbf35269efda03be0e440b1fbc5 authored over 15 years ago by Marc Sturm <[email protected]>

TOPPAS: storing/loading of pipelines works, but some strange things are still happening

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5535 6adb6e08-d915-0410...

82683c13772bb552cbda43c2fe8cbc28b6dc0a69 authored over 15 years ago by Johannes Veit <[email protected]>

Docu change

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5534 6adb6e08-d915-0410-9...

64e1e4de19433c3360eeb9ec6a40aa18accea19c authored over 15 years ago by Marc Sturm <[email protected]>

Fixed tabs in CHANGELOG

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5533 6adb6e08-d915-0410-9...

9c43d03428253ea3955d4e893e1a17a6715d0b06 authored over 15 years ago by Marc Sturm <[email protected]>

Fixed invlaid empty char

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5532 6adb6e08-d915-0410-9...

e8b7769fe08520f7490865bc463e0a1b0dce4abe authored over 15 years ago by Marc Sturm <[email protected]>

added another check to additional out-file parameters to avoid irritating messages like "QFSFileEngine::open: No file name specified QFile::remove: Empty or null file name" if parameter was not set

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5531 6adb6e08-d915-0410-9...

21a469cb2542bfc7c7041d00adbb74c53d19db73 authored over 15 years ago by Stephan Aiche <[email protected]>

MzML: fixed error with unknown CV terms; mzXML: corrected problem with msLevel=0 scans

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5530 6adb6e08-d915-0410-9...

dc6e2bcf28adbc9b33c47766425554c310b94fea authored over 15 years ago by Marc Sturm <[email protected]>

TOPPAS: storing works, loading is next..

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5529 6adb6e08-d915-0410...

efc1b86e376e68d28c09b21964461f6dc997c161 authored over 15 years ago by Johannes Veit <[email protected]>

my laptop crashes every ~ 3 minutes - might be the last commit from this machine *sniff* (added some methods for storing/loading of TOPPAS pipelines)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5528 6adb6e08-d915-0410...

c45e4db99942bfd90a432e289050efc6831c4e21 authored over 15 years ago by Johannes Veit <[email protected]>

Todo changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5527 6adb6e08-d915-0410-9...

2895a16b5e2ad472108920b1d9e7c66e0242273b authored over 15 years ago by Marc Sturm <[email protected]>

updated MRM feature finder false discovery rate and fixed bug in MascotXMLFile

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5525 6adb6e08-d915-0410-9...

5e23cb1a9eee02b979e945efc1b454f3c99d60b3 authored over 15 years ago by Andreas Bertsch <[email protected]>

added peptide indexer (simple and slow implementation)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5524 6adb6e08-d915-0410-9...

23367c5dbdbe2dc042668fcec9d469acfee71536 authored over 15 years ago by Andreas Bertsch <[email protected]>

Added changelog to docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5522 6adb6e08-d915-0410-9...

bc9e53eb5b2a699303fe04c7855836595411fe8f authored over 15 years ago by Marc Sturm <[email protected]>

mzML: changed version from 1.1 to 1.1.0

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5521 6adb6e08-d915-0410-9...

ee0a56004d4e03c524f20b47e3399bcacb08dc21 authored over 15 years ago by Marc Sturm <[email protected]>

Derived TextFile from StringList

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5520 6adb6e08-d915-0410-9...

94153ab3f2ac7d64bb275d9911bae14ef7c2f459 authored over 15 years ago by Marc Sturm <[email protected]>

** fixed test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5519 6adb6e08-d915-0410-9...

587d0c156d7a6615a63168c74d4e042fa97fcfee authored over 15 years ago by Chris Bielow <[email protected]>

fixed bug that caused segfault in TOPPAS pipelines with more than 2 tools

-> simple pipelines work now (i.e. input file -> noise filter -> baseline filter -> peak picker -...

b78fba9bfa85a1bf54b8c63c2d09dd96e274bccc authored over 15 years ago by Johannes Veit <[email protected]>

** fixed some test errors

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5517 6adb6e08-d915-0410-9...

9b1b515f4909f9e57ac5e0cf1ef2ebdad8a523b0 authored over 15 years ago by Chris Bielow <[email protected]>

fixed compilation error and warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5516 6adb6e08-d915-0410-9...

e05caab7424ce3b59436afe5b7c70660a26a10de authored over 15 years ago by Alexandra Zerck <[email protected]>

Minor change

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5515 6adb6e08-d915-0410-9...

fbe7baaff406843a918393c7bbfaac7dd83b99e0 authored over 15 years ago by Marc Sturm <[email protected]>

updated feature finder with better signal noise usage

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5514 6adb6e08-d915-0410-9...

991bbc4c9c3149b294c5e8a0b0df70932cabf578 authored over 15 years ago by Andreas Bertsch <[email protected]>

** small typo

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5513 6adb6e08-d915-0410-9...

408ae5f63ca7bb3daf6fab559a2abe98f99a22b9 authored over 15 years ago by Chris Bielow <[email protected]>

** cleaned up simulator

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5512 6adb6e08-d915-0410-9...

89c67a656a863ea66b0f8b0ae6cae912f804fdbc authored over 15 years ago by Chris Bielow <[email protected]>

MzML: fixed problem with empty mzML version string

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5511 6adb6e08-d915-0410-9...

e7ec5074ac4d8c89a7cd78712681bd03bb244446 authored over 15 years ago by Marc Sturm <[email protected]>

Updated MzMLFile docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5510 6adb6e08-d915-0410-9...

4a8b897f781d1202f88fa4fc09eb287ae5955ffa authored over 15 years ago by Marc Sturm <[email protected]>

** fixed warnings of Base64.h

** fixed bug in TOPPASToolVertex
** fixed bug in IDFileConverter.C (do not use FileHandler::getTy...

7dfc4cbbbf7d887e26fe7a157ed0764b60e16b76 authored over 15 years ago by Chris Bielow <[email protected]>

MzMLFile: Moved integer arrays to charge (integer m/z arrays are not allowed)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5508 6adb6e08-d915-0410-9...

85b9c7ff7b471e2caac14f8659fdbb662f7b867b authored over 15 years ago by Marc Sturm <[email protected]>

added precursor selection for MALDI and ESI

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5507 6adb6e08-d915-0410-9...

72b61dbcdd9f43bb900e4b817e81b5ac415af5f5 authored over 15 years ago by Alexandra Zerck <[email protected]>

fixed warning

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5506 6adb6e08-d915-0410-9...

e65deb0175465377cf80337302eb99c6d9c09aee authored over 15 years ago by Alexandra Zerck <[email protected]>

included rt and detectability prediction

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5505 6adb6e08-d915-0410-9...

02511b615057c7270f2fbad0411f2a58b69361ad authored over 15 years ago by Alexandra Zerck <[email protected]>

added some improvements

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5504 6adb6e08-d915-0410-9...

732fc7faa482cc1dc5fe0c116ffceadafd2916e0 authored over 15 years ago by Alexandra Zerck <[email protected]>

added function for prediction of rt and pt given the peptide sequence vector

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5503 6adb6e08-d915-0410-9...

b8e0c713f05ad274c60803ef47327eaae3fa16aa authored over 15 years ago by Alexandra Zerck <[email protected]>

TOPPAS: the simplest of all pipelines works now..

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5502 6adb6e08-d915-0410...

d6056b02d6d1702ffa8053e459f7cdc73a1d0aed authored over 15 years ago by Johannes Veit <[email protected]>

Fixed some problems with MzMLFile test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5501 6adb6e08-d915-0410-9...

213208432635b3c214dd6c0dd50131c35435824d authored over 15 years ago by Marc Sturm <[email protected]>

TOPPAS: added methods for executing pipelines (does not work yet), some minor changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5500 6adb6e08-d915-0410...

79c544edd6f1c5502843541c082c540bc700746a authored over 15 years ago by Johannes Veit <[email protected]>

TOPPView: Feature label improvement

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5499 6adb6e08-d915-0410-9...

aa448bff12c9c14d7f1b340b45b6388397682a21 authored over 15 years ago by Marc Sturm <[email protected]>

FeatureFinder: Added spectrum index and native ID to features

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5498 6adb6e08-d915-0410-9...

47ae631e46131c7f4a14363709885de95a84cce3 authored over 15 years ago by Marc Sturm <[email protected]>

forgot to remove commented code...

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5497 6adb6e08-d915-0410-9...

00e2b6dfd6eaf8a470620d9cf54baf1a0e6b7bd4 authored over 15 years ago by Hendrik Weisser <[email protected]>

added option to return full paths to 'File::fileList'

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5496 6adb6e08-d915-0410-9...

48fdd1aabd6dbe07c627214b8f634abf3aa26ca0 authored over 15 years ago by Hendrik Weisser <[email protected]>

** fix Precision the same way as Recall earlier

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5495 6adb6e08-d915-0410-9...

40f3c3b36def84bc826e235ef0d29fb0a2f16f54 authored over 15 years ago by Chris Bielow <[email protected]>

Some minor changes and fixes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5494 6adb6e08-d915-0410-9...

7cd5ed6903424a26473a8a0a61edc1bab5a0db63 authored over 15 years ago by Marc Sturm <[email protected]>

test for 32/64bit integers

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5493 6adb6e08-d915-0410-9...

0e20d1821e3141b336f69d7d2485a7448419356e authored over 15 years ago by David Wojnar <[email protected]>

** fixed bug that allowed precision > 1 in MAPMATCHING/MapAlignmentEvaluationAlgorithmPrecision.C

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5492 6adb6e08-d915-0410-9...

d57a9de134d0947b7d38296c306368526c5fbd35 authored over 15 years ago by Chris Bielow <[email protected]>

** account for adducts in IsotopeDistributionGeneral

** fixed a bug concerning for loops (C++ guide updated)

git-svn-id: https://open-ms.svn.sourcefo...

ba3f0895c87c116a3e62f7130cc9e830ac745aa7 authored over 15 years ago by Chris Bielow <[email protected]>

** fixed a bug, some minor stuff

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5490 6adb6e08-d915-0410-9...

1371a1cb58b9c46316f505990dea85dedd051eee authored over 15 years ago by Chris Bielow <[email protected]>

cleared warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5489 6adb6e08-d915-0410-9...

0ddffd74a7acb5320d57779d82b862414c8fae51 authored over 15 years ago by David Wojnar <[email protected]>

Fixed line ending difference problem in FileFilter TOPP test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5488 6adb6e08-d915-0410-9...

e1729357ae9ed85405453b2553e155d7d99191f7 authored over 15 years ago by Marc Sturm <[email protected]>

** fixed RT simulation bug (still some work to do)

** removed lots of deprecated stuff from old Simulator
** some coding convention fixes

git-svn-i...

ef83ae63c5f94592b242b901c4b9c5d388cc70a3 authored over 15 years ago by Chris Bielow <[email protected]>

added test for the 'PepXMLFile::load' method

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5486 6adb6e08-d915-0410-9...

7b51c126a6d164ef5082a03ad11de13a040a4c0a authored over 15 years ago by Hendrik Weisser <[email protected]>

can't rely on pepXML element 'search_summary', as it may be missing

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5485 6adb6e08-d915-0410-9...

c66dd6551e4fcc871cf0d72b721a01b121e416cd authored over 15 years ago by Hendrik Weisser <[email protected]>

Docu changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5484 6adb6e08-d915-0410-9...

e2220a11b966e4033d349ee7182d9683da75eee1 authored over 15 years ago by Marc Sturm <[email protected]>

added 32/64bit decode support

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5483 6adb6e08-d915-0410-9...

95e581def9cf0f720979ab0f126a70eb811a6579 authored over 15 years ago by David Wojnar <[email protected]>

changed XTandemAdapter native ids to one-based... somehow tandem generates the id 1000000 from a native-id=0; argl

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5482 6adb6e08-d915-0410-9...

32dc04e1a232198dc09124c30f25fc9ae6882ee9 authored over 15 years ago by Andreas Bertsch <[email protected]>

added TOPP test for IDFileConverter, Sequest .out directory, with -ignore_proteins_per_peptide option

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5481 6adb6e08-d915-0410-9...

f54a25a6af2e56928644f45115736cb7661c383b authored over 15 years ago by Clemens Gröpl <[email protected]>

added mean, abs dev and std dev to IDMassAccuracy

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5480 6adb6e08-d915-0410-9...

527983364617b60d52b0358866630115902956e4 authored over 15 years ago by Andreas Bertsch <[email protected]>

TOPPView: Added warning about negative intensities

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5479 6adb6e08-d915-0410-9...

14c5079c4d71c543ef9289dd8aa58f5ba97835fd authored over 15 years ago by Marc Sturm <[email protected]>

** added -remove_activation test for FileFilter

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5478 6adb6e08-d915-0410-...

8e256914c361122cd15765e898eba57262bbc1c8 authored over 15 years ago by Chris Bielow <[email protected]>

Todo changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5477 6adb6e08-d915-0410-9...

45e30b4a28481666bd4bf385e563d503d7a4dd3f authored over 15 years ago by Marc Sturm <[email protected]>

MSSpectrum: renamed MetaDataArray to FloatDataArray; added StringDataArray

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5476 6adb6e08-d915-0410-9...

e2b509643e9dd176694f0e010ad090138f671c8c authored over 15 years ago by Marc Sturm <[email protected]>

** added F1 measure to MapAlignmentEvaluation (harmonic mean between recall&precision)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5475 6adb6e08-d915-0410-9...

195457549b841ed813cecd9d745b48d0c856e1e1 authored over 15 years ago by Chris Bielow <[email protected]>

** some docu

** Sim TODO
** ChargePair extension

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open...

3627c9625d22537a7f020d0ff481b662e7a10a30 authored over 15 years ago by Chris Bielow <[email protected]>

improved support for the pepXML format

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5473 6adb6e08-d915-0410-9...

5da9bf6b333d3ebf08ce057036a6df59d6965198 authored over 15 years ago by Hendrik Weisser <[email protected]>

FFEval: Added incorrect matches count

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5471 6adb6e08-d915-0410-9...

c4c38fe944f23b52a5dc1d941e7ebdb11715e0b6 authored over 15 years ago by Marc Sturm <[email protected]>

nothing really

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5470 6adb6e08-d915-0410-9...

8d1c7fa4f5bb345f99d5bdc50b8feb9a285d9d02 authored over 15 years ago by Chris Bielow <[email protected]>

File: fixed writable() method - no empty file is created

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5469 6adb6e08-d915-0410-9...

a2a8b4201abaf0da880eab7aa63ec93069f97060 authored over 15 years ago by Marc Sturm <[email protected]>

** added some TODO's for Sim -- more work!!

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5468 6adb6e08-d915-0410-9...

5ef083700ce430cdc5d7db8c3873bce36a01645f authored over 15 years ago by Chris Bielow <[email protected]>

Fixed bug in ProcessingAction name assignment

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5467 6adb6e08-d915-0410-9...

f67521cb9e9c4b845b9f54cc1f53f9858f3b271e authored over 15 years ago by Marc Sturm <[email protected]>

Added progress end to simple and simplest FF

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5466 6adb6e08-d915-0410-9...

d91a27ed6329fbaa0f4792da713ffe721e46c65a authored over 15 years ago by Marc Sturm <[email protected]>

** remove debug output

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5465 6adb6e08-d915-0410-9...

5155c4c2bc0854e7207d5c91afec24544eea9ea7 authored over 15 years ago by Chris Bielow <[email protected]>

TOPPAS: some refactoring + minor changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5464 6adb6e08-d915-0410...

07d6eccc4cf492d97c9c5c792921546f9623c04e authored over 15 years ago by Johannes Veit <[email protected]>

decoy database creator now allows appending of reversed sequences; warns if identifiers are multiple present within a database

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5463 6adb6e08-d915-0410-9...

51215d1fd8a6a1de2b4a1488dbd0b75378d9e5c7 authored over 15 years ago by Andreas Bertsch <[email protected]>

Fixed tool bar visibility bug

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5462 6adb6e08-d915-0410-9...

2cd873a6d4b96fd27eaf0a03fea2263c68100670 authored over 15 years ago by Marc Sturm <[email protected]>

SpectrumCanvas: Added new labeling functionality

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5461 6adb6e08-d915-0410-9...

3501137dce6792481a6f6145e4bd6407fc954c62 authored over 15 years ago by Marc Sturm <[email protected]>

TOPPAS: some changes to edge validity check

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5460 6adb6e08-d915-0410...

a3861f261aa2e81bd396e2150daeff8f64b17198 authored over 15 years ago by Johannes Veit <[email protected]>

TOPPAS: some changes to edge validity check

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5459 6adb6e08-d915-0410...

fb3a6f8ead8fd9116e84d3c3ca19e75df683c59b authored over 15 years ago by Johannes Veit <[email protected]>

started implementing false discovery rate for concatenated sequence database searches

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5458 6adb6e08-d915-0410-9...

76ad56b15a93063dd304da530dcbec4cd1ebfb25 authored over 15 years ago by Andreas Bertsch <[email protected]>

Added two new gradients

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5457 6adb6e08-d915-0410-9...

c31671a7810f7bb324508e8ed28b2d3f94f80d8c authored over 15 years ago by Marc Sturm <[email protected]>

fixed warning

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5456 6adb6e08-d915-0410-9...

4ff91b8b871355fd6cf939e1d466d57b34c105a1 authored over 15 years ago by Marc Sturm <[email protected]>

** warning fix

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5455 6adb6e08-d915-0410-9...

1eced3605eddd206d2e3f4300a0cba517da0d259 authored over 15 years ago by Chris Bielow <[email protected]>

labeld pair finder now supports (alpha) labeled MRM experiments and double lists of possible pair distances

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5454 6adb6e08-d915-0410-9...

ce8b064dbe98fd740d9f1d015bba8c295fc8dd03 authored over 15 years ago by Andreas Bertsch <[email protected]>

TOPPView: added context menu to spectrum manager; added preferences to layer manager context menu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5453 6adb6e08-d915-0410-9...

36ff6aae48852ce9bb285681d7a5f97e4df3f247 authored over 15 years ago by Marc Sturm <[email protected]>

Improved docu of file conversion

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5452 6adb6e08-d915-0410-9...

565ff12d4a18203801536839cb8b786bb8d74460 authored over 15 years ago by Marc Sturm <[email protected]>

removed calibration output checks

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5451 6adb6e08-d915-0410-9...

152959be40705be6a0b2429d0241661ee5fe6161 authored over 15 years ago by Alexandra Zerck <[email protected]>

** fixed test (no idea why it breaks)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5450 6adb6e08-d915-0410-9...

3520a1ed9384be679ea7d9061df1a0dcc334b320 authored over 15 years ago by Chris Bielow <[email protected]>

removed -p_value option

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5449 6adb6e08-d915-0410-9...

7bfe9753f83f613c5008773da7052eeb82f145dd authored over 15 years ago by Clemens Gröpl <[email protected]>

docu changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5448 6adb6e08-d915-0410-9...

6a95b2ec1b244577ff98f18f5b4a3db9805d06a4 authored over 15 years ago by Marc Sturm <[email protected]>

Fixed coding convention error

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@5447 6adb6e08-d915-0410-9...

99f3680b5cefc2c96b67516798d31db15984092b authored over 15 years ago by Marc Sturm <[email protected]>