github.com/OpenMS/OpenMS commits | Ecosyste.ms: OpenCollective

** new external code system - compatible with Cmake 2.8 (and 2.6)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6493 6adb6e08-d915-0410-9...

a8128e9ed2654dbe078bec0bda95c922531a73a0 authored almost 15 years ago by Chris Bielow <[email protected]>

** removed two logger macros

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6492 6adb6e08-d915-0410-9...

c1898410a737d5bf55b7d78260110f35de0413de authored almost 15 years ago by Chris Bielow <[email protected]>

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6490 6adb6e08-d915-0410-941f-83917bcadc18

3b1ed4e3fe9a807e82c98a8678a44534139caf83 authored almost 15 years ago by Alexandra Zerck <[email protected]>

rt prediction with aasequence

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6489 6adb6e08-d915-0410-9...

78cc48d70f91eec7a7d130b7b642c428381e003e authored almost 15 years ago by Alexandra Zerck <[email protected]>

fixed Ionization test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6487 6adb6e08-d915-0410-9...

9a704fd6cb4ab8bce2d6c7b953072698b9430ecf authored almost 15 years ago by Stephan Aiche <[email protected]>

fixed stupid bug (mass trace comparison)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6486 6adb6e08-d915-0410-9...

16fb6907b515a498d02abf02b6fa0d663064ffba authored almost 15 years ago by Hendrik Weisser <[email protected]>

now properly initializing variables

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6485 6adb6e08-d915-0410-9...

5d765fcbe5a33449842203822ddaa86e2ac17d07 authored almost 15 years ago by Hendrik Weisser <[email protected]>

** fixed LogStream - docu error

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6484 6adb6e08-d915-0410-9...

af8c8e864915f5d7daa2d12c458d6703fe9727f1 authored almost 15 years ago by Chris Bielow <[email protected]>

fixed comments

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6483 6adb6e08-d915-0410-9...

00e46e1802a8e3daf69b7c83b0d9151a4322e271 authored almost 15 years ago by Hendrik Weisser <[email protected]>

** minor fixes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6482 6adb6e08-d915-0410-9...

5f631166cd0c8aeea94b0368712875e6cd2f336a authored almost 15 years ago by Chris Bielow <[email protected]>

fixed topptest

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6481 6adb6e08-d915-0410-9...

00ce543718b6263c893763fb9cb93dce1c2e8dd0 authored almost 15 years ago by Alexandra Zerck <[email protected]>

BUGFIX: flag skip_cv was ignored

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6480 6adb6e08-d915-0410-9...

43ac9b973f02ee3a24b4f164990e9eaaf147f131 authored almost 15 years ago by Alexandra Zerck <[email protected]>

fixed behaviour for features without individual convex hulls for mass traces

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6479 6adb6e08-d915-0410-9...

87cfad33e176e708a39a263002c2535789dc0bdb authored almost 15 years ago by Hendrik Weisser <[email protected]>

BUGFIX (Ticket #74): changed default values of stepsizes to prevent infinite loops, removed setByUser_ calls

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6478 6adb6e08-d915-0410-9...

ebec5e91016131ca02b1fded859afa1683e1ff3a authored almost 15 years ago by Alexandra Zerck <[email protected]>

if peptide mass is used as reference, consider only monoisotopic mass trace for mapping; added hashing step to improve runtime (only for featureXML case)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6477 6adb6e08-d915-0410-9...

4a025003a47c66a3398bb4276000b5f0d702379a authored almost 15 years ago by Hendrik Weisser <[email protected]>

BUGFIX (Ticket #61)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6476 6adb6e08-d915-0410-9...

155c686c9368a5fa3637c128acb5ef024ed1d30e authored almost 15 years ago by Chris Bielow <[email protected]>

** known issues section

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6474 6adb6e08-d915-0410-9...

11f951e86f0c4ba5fbfbe29c2c1e14319aacb068 authored almost 15 years ago by Chris Bielow <[email protected]>

** fixed compile error

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6472 6adb6e08-d915-0410-9...

518a9d3b169ea2b715b0d7bc72527bbd0dc6b0e0 authored almost 15 years ago by Chris Bielow <[email protected]>

** 3D-View now honors the current visible AreaType

** two bugfixes to simulator: IonizationSimulation did not clear adduct's for new params, segfaul...

184f8f50385f771cec5159af5df08bbd4dd43d0e authored almost 15 years ago by Chris Bielow <[email protected]>

** cleanup

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6469 6adb6e08-d915-0410-9...

69b31536a581d5c4ffe09b8876875dffc01896d2 authored almost 15 years ago by Chris Bielow <[email protected]>

** extension for TextImporter

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6468 6adb6e08-d915-0410-9...

e30a9044a20cafb6ec28de5da3b22595e14429cf authored almost 15 years ago by Chris Bielow <[email protected]>

** added intensity weighted clustering

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6467 6adb6e08-d915-0410-9...

5f99b466a4fc4154a03682b484ac64e122a79434 authored almost 15 years ago by Chris Bielow <[email protected]>

** fixed test errors

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6465 6adb6e08-d915-0410-9...

0f20cc479e2637f4071d7e172515f06e33186893 authored almost 15 years ago by Chris Bielow <[email protected]>

** fixed some tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6464 6adb6e08-d915-0410-9...

b11da8b8bcc57271e40c15ca0f4bbecb5b19e1b9 authored almost 15 years ago by Chris Bielow <[email protected]>

** this is probably going to break some tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6463 6adb6e08-d915-0410-9...

52ce67bc864699a287ae500de21ac4aebf1c3e03 authored almost 15 years ago by Chris Bielow <[email protected]>

added restriction for MSLevel1 and to ER scans

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6461 6adb6e08-d915-0410-9...

ae5e3bc1eab0da3c77fae3bc5c80b689f9c16da5 authored almost 15 years ago by Andreas Bertsch <[email protected]>

fixed bug; changed output format; code cleanup

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6460 6adb6e08-d915-0410-9...

58000279f159fec5d36391ef925531f7e4bf0284 authored almost 15 years ago by Andreas Bertsch <[email protected]>

** small fix for VS2010

** QT lib module still broken

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/Op...

449f47bd8066aa527c303729e0858a6f171fce51 authored almost 15 years ago by Chris Bielow <[email protected]>

** docu fixes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6456 6adb6e08-d915-0410-9...

f65e410c402612c5872a201eb3ce512168b98fb9 authored almost 15 years ago by Chris Bielow <[email protected]>

** new docu test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6455 6adb6e08-d915-0410-9...

c36555cb602786bf4e08800bf02c1280ad8a61bc authored almost 15 years ago by Chris Bielow <[email protected]>

** cleaned up License, docu etc

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6454 6adb6e08-d915-0410-9...

e8ed02ca27a887bcb02694b98b3b234461cbb949 authored almost 15 years ago by Chris Bielow <[email protected]>

fixed missing update of Version in VersionInfoTest .. we should consider to use CMake for this

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6452 6adb6e08-d915-0410-9...

1b5ac652aca3f68c048d2855df034d5479486a14 authored almost 15 years ago by Stephan Aiche <[email protected]>

BUGFIX (#44): projections are disabled if no peakdata layer is present

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6451 6adb6e08-d915-0410-9...

0496564141f5219f5bb6ae531d478c2e0c27997d authored almost 15 years ago by Chris Bielow <[email protected]>

** some more docu & attempt to document LogStream defines

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6450 6adb6e08-d915-0410-...

c3533b635a49c0b05b0303de1ba71ec54845697c authored almost 15 years ago by Chris Bielow <[email protected]>

updated head version to OpenMS 1.7 (CMakeLists.txt, SplashScreens, Contrib Version, Mac OS Installer imgs .. hope that was all)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6449 6adb6e08-d915-0410-9...

d50f3064cd6689b54a78f43db42ffe342696cb5a authored almost 15 years ago by Stephan Aiche <[email protected]>

merged revisions 6244:6440 from release branch 1.6 into HEAD

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6446 6adb6e08-d915-0410-9...

4be69ebd1f62cd5eb1cb981c05518f2d9dc00718 authored almost 15 years ago by Andreas Bertsch <[email protected]>

renamed IDTagger to DocumentIDTagger (on behalf of Chris)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6269 6adb6e08-d915-0410-9...

7651edeaa6d7603925a9e7dd6812f763f48de4b7 authored almost 15 years ago by Stephan Aiche <[email protected]>

fixed problem with IDDecoyProbability

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6243 6adb6e08-d915-0410-9...

7f6827bcbc1e46c7b9fb03dc52053f2d89c3e126 authored almost 15 years ago by Andreas Bertsch <[email protected]>

added new TOPP-tool, PrecursorMassCorrector; added entries for TOPP docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6242 6adb6e08-d915-0410-9...

d42ba41cdb4650f047ce5af029f90d2cacd4a2ad authored almost 15 years ago by Andreas Bertsch <[email protected]>

fixed wrong semicolon

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6241 6adb6e08-d915-0410-9...

ad9470ae8b880b26d7287dbcaec5ebdae80f5119 authored almost 15 years ago by Andreas Bertsch <[email protected]>

added SeedListGenerator to executables to be build

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6239 6adb6e08-d915-0410-9...

643bed117be58051942553ea48274df356d1a795 authored almost 15 years ago by Andreas Bertsch <[email protected]>

added export macros and fixed another test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6238 6adb6e08-d915-0410-9...

2882f08abde035618c155c5094f438b444b2f74e authored almost 15 years ago by Andreas Bertsch <[email protected]>

added export macros and fixed test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6237 6adb6e08-d915-0410-9...

292c50313c3055d0f45153b76357ab1f35bb0434 authored almost 15 years ago by Andreas Bertsch <[email protected]>

changed argument type of load function in PepNovoOutfile

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6236 6adb6e08-d915-0410-...

61280f9a6acad51c0634708450049127144f7535 authored almost 15 years ago by Sandro Andreotti <[email protected]>

deactivated PepNovoAdapter TOPP test as it requires a PepNovo installation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6235 6adb6e08-d915-0410-...

6a578f59b82013c9696339228eea4dd4772c53ac authored almost 15 years ago by Sandro Andreotti <[email protected]>

PepNovo Adapter fixes + test cases

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6234 6adb6e08-d915-0410-...

3f7cdf8f64829a668a81577044d4247bdf569708 authored almost 15 years ago by Sandro Andreotti <[email protected]>

merging branch/FileCompress with HEAD

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6233 6adb6e08-d915-0410-9...

4e0a454a269ba40c0c4d08ec60f7a90f5386e3ba authored almost 15 years ago by David Wojnar <[email protected]>

added chromatogram output to FileInfo

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6231 6adb6e08-d915-0410-9...

b0b32e99d315813517556099d2bf8a61a27d99ba authored almost 15 years ago by Andreas Bertsch <[email protected]>

InternalCalibration now also works on annotated feature maps and can output its transformation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6230 6adb6e08-d915-0410-9...

9e9c26af6fed20e8bbef508c8f224726ea21d44d authored almost 15 years ago by Alexandra Zerck <[email protected]>

TOPPAS: changed merger behavior (almost working..)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6229 6adb6e08-d915-0410...

df576907142f5b775bc51743368fccdbd86568cd authored almost 15 years ago by Johannes Veit <[email protected]>

** fixed compile error in PepNovoAdapter.C

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6228 6adb6e08-d915-0410-9...

e4e8a866cb86a239f2aeda5aa263a19729707465 authored almost 15 years ago by Chris Bielow <[email protected]>

forgot to submit the TOPP tool...

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6225 6adb6e08-d915-0410-9...

7f78ac45699f3729b453e63e41bbcbcbce66554a authored almost 15 years ago by Hendrik Weisser <[email protected]>

** fixed & cleaned up build system

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6224 6adb6e08-d915-0410-...

22a04afe9589eb04c00b6d6b5c463a3b23f37656 authored almost 15 years ago by Chris Bielow <[email protected]>

forgot to set 'svn:keywords Id'

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6223 6adb6e08-d915-0410-9...

bf2d153510c77e45f0f938a358b38fcfdc662ad4 authored almost 15 years ago by Hendrik Weisser <[email protected]>

new class and TOPP tool SeedListGenerator (tests and tool docu still pending)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6222 6adb6e08-d915-0410-9...

2b15cd5abff7ccd537637297acaf039712b3df15 authored almost 15 years ago by Hendrik Weisser <[email protected]>

recursive copying of Pepovo's Models directory

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6221 6adb6e08-d915-0410-...

b2656677c9428e31b6688aeb064f35cbb3712c84 authored almost 15 years ago by Sandro Andreotti <[email protected]>

commented failing lines to make tests compile.

Real tests to be added tomorrow

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms...

e85d2b28ee459b49f1158c11a799efdae9dee489 authored almost 15 years ago by Sandro Andreotti <[email protected]>

added possibility to use combined target decoy strategy for IDDecoyProbability

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6219 6adb6e08-d915-0410-9...

73440579241df96404bda8af582a4475fe5acfbd authored almost 15 years ago by Andreas Bertsch <[email protected]>

model directory bug removed

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6218 6adb6e08-d915-0410-...

42d022bda7a8a8d8183bff8e9a78837e019cc2ae authored almost 15 years ago by Sandro Andreotti <[email protected]>

bugfix: Mascot XML file containing fixed oxidation of M are automatically changed to variable; caused seg. fault

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6217 6adb6e08-d915-0410-9...

d92fa0a47a099f35e6b528611deb411e6ed8579c authored almost 15 years ago by Andreas Bertsch <[email protected]>

removed unnecessary includes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6216 6adb6e08-d915-0410-9...

9e189155f58acfba782d4d2ed4af336190e4dcee authored almost 15 years ago by Hendrik Weisser <[email protected]>

bugfix: fixed horrible peptide indexer bug; all proteins were off by one regarding the order in the sequence database

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6215 6adb6e08-d915-0410-9...

33ba30d9171f0e6ebc9381da767f875bb33045b9 authored almost 15 years ago by Andreas Bertsch <[email protected]>

** small improvements

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6214 6adb6e08-d915-0410-9...

b14db3fda394d3201dc2bd61b189ff8c70d7ebf0 authored almost 15 years ago by Chris Bielow <[email protected]>

updated to new contrib

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6213 6adb6e08-d915-0410-9...

8359f3411527276be7bfa6476b6e150686bd1604 authored almost 15 years ago by Andreas Bertsch <[email protected]>

** TOPP tutorial updated

** improved TextImporter
** RTPredict docu updated

git-svn-id: https://open-ms.svn.sourceforge.n...

8ea78a6a6f9045dcd2f736cb0348a890e2971729 authored almost 15 years ago by Chris Bielow <[email protected]>

refactored the PepNovo Adapter classes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6210 6adb6e08-d915-0410-...

968350f0c2c049ee74c35eac7cce7a272465d757 authored almost 15 years ago by Sandro Andreotti <[email protected]>

TOPPAS: added default param descriptions for categories

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6209 6adb6e08-d915-0410...

215c2d6d4d4ee328d09ff3e093e33efbb9b12d83 authored almost 15 years ago by Johannes Veit <[email protected]>

fixed memory leak

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6206 6adb6e08-d915-0410-9...

4eb8a143b4ba9bacc71120c5f8e77e70b94edf18 authored almost 15 years ago by Andreas Bertsch <[email protected]>

** fix of strange bug in UniqueIdInterface which prevented conversion of String->UInt64 (the current code is rather nasty as well)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6205 6adb6e08-d915-0410-9...

1c92c9f0f60058e1d60f938e52f1643f5f8301ec authored almost 15 years ago by Chris Bielow <[email protected]>

TOPPAS: added categories in the TOPP tools treeview

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6204 6adb6e08-d915-0410...

4a7ae4a29d0ce481c16a9a3f7cb63c2f5a6e5b59 authored almost 15 years ago by Johannes Veit <[email protected]>

** added functionality of IDMapper.h to TOPP tool

** improved documentation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS...

272d97a2d9be26c198be275699ff005ebf077b36 authored almost 15 years ago by Chris Bielow <[email protected]>

remove SequestAdapter duplicate entry

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6202 6adb6e08-d915-0410-9...

606d78a987daeee838001fc415cfe55953ff38e8 authored almost 15 years ago by Andreas Bertsch <[email protected]>

TOPPAS: misc improvements

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6201 6adb6e08-d915-0410...

2c11f4cdd36c209f0ccb3bf8e8b23fe3ac4dd75b authored almost 15 years ago by Johannes Veit <[email protected]>

** some docu improvements

i.e. valid StringLists are printed with double quotes in --help of TOPP tools now, avoid confusio...

cd15aa9b164f3d6a0bc64cfa137f2690ae4b5e8e authored almost 15 years ago by Chris Bielow <[email protected]>

fixed problem with unknown spectrumType in mzData files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6199 6adb6e08-d915-0410-9...

f7f28edcdadd4ae95db005e1f8c7c0ce972ea9b2 authored almost 15 years ago by Andreas Bertsch <[email protected]>

TOPPAS: added new merging functionality. round-based iterative merging should work now.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6197 6adb6e08-d915-0410...

b8996210d52f0f7760a81a002f494563a7e313a4 authored almost 15 years ago by Johannes Veit <[email protected]>

fixed DBExporter mzML output file (software and processing counts)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6196 6adb6e08-d915-0410-9...

ee79e0129bd13a1d681adfb5729c419f0009a382 authored almost 15 years ago by Andreas Bertsch <[email protected]>

added newline

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6195 6adb6e08-d915-0410-9...

fc0d1ef88f9d89434e76ca673a4ced5704abf102 authored almost 15 years ago by Andreas Bertsch <[email protected]>

added missing export macros...

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6194 6adb6e08-d915-0410-9...

65392a2f058d64a0dd811a7f9e601f8926a78bd9 authored almost 15 years ago by Andreas Bertsch <[email protected]>

changed output of MRMPairFinder

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6193 6adb6e08-d915-0410-9...

3569f7cbb08e831fcbcb33e0a28e4b2ef6646837 authored almost 15 years ago by Andreas Bertsch <[email protected]>

** replaced a lot of "endl" with "\n" which should make file writing faster.. a lot

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6192 6adb6e08-d915-0410-...

c4477a3b2dfe66d95067112927b17dde5f27bc53 authored almost 15 years ago by Chris Bielow <[email protected]>

added escaping of XML strings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6191 6adb6e08-d915-0410-9...

c23ece3d2a934473272bc3016373b018b78f472b authored almost 15 years ago by Andreas Bertsch <[email protected]>

** fixed bug Ticket #30

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6190 6adb6e08-d915-0410-9...

8481a91ede835468a438965f33aaf416c7895600 authored almost 15 years ago by Chris Bielow <[email protected]>

added BSA example dataset (3 HPLC-MS runs)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6189 6adb6e08-d915-0410-9...

aa26f6168eb430608dfd155bf66627df861a8ec8 authored almost 15 years ago by Andreas Bertsch <[email protected]>

changed implementation of < operator of ModificationDefinition

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6188 6adb6e08-d915-0410-9...

369f1593844626f0ae700dd8d5250b0fc28c63ff authored almost 15 years ago by Andreas Bertsch <[email protected]>

changed DateTime_test, does not work on Qt 4.3

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6187 6adb6e08-d915-0410-9...

851994f45b2a00766d645e091ad16c332116d34d authored almost 15 years ago by Andreas Bertsch <[email protected]>

some changes of consensus id

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6186 6adb6e08-d915-0410-9...

e9303d3bdc9457b0396c07c0936195744e7498b1 authored almost 15 years ago by Andreas Bertsch <[email protected]>

improved the PepXML class a little bit

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6185 6adb6e08-d915-0410-9...

4382746ffe5b59a45f5fd594cb4200fd5ac36531 authored almost 15 years ago by Andreas Bertsch <[email protected]>

fixed warning

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6184 6adb6e08-d915-0410-9...

1ab05510d93658fa966e382c38777affff872ef0 authored almost 15 years ago by Andreas Bertsch <[email protected]>

Bugfix: fixed software and processing method entry accumulation; see trac ticked #29

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6183 6adb6e08-d915-0410-9...

092a622b140b1cb50897a3c1f129af58512a53ab authored almost 15 years ago by Andreas Bertsch <[email protected]>

** fixed build system: SVInStream_test does not exist!

** fixed warning

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6181 6ad...

4cc1a880d89a8ccddec43450d82802046dee8500 authored almost 15 years ago by Chris Bielow <[email protected]>

added new map alignment algorithm based on peptide IDs: MapAlignmentAlgorithmIdentification

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6179 6adb6e08-d915-0410-9...

ab2e8e68bae454e8ee6145117da32ecf7e5d8d66 authored almost 15 years ago by Hendrik Weisser <[email protected]>

b_spline: some minor fixes; removed special case of using all x values as breakpoints (not possible due to GSL issues)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6178 6adb6e08-d915-0410-9...

54354b4543585a11202d37eb41189bf56a81a015 authored almost 15 years ago by Hendrik Weisser <[email protected]>

fixed spelling

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6177 6adb6e08-d915-0410-9...

f3d0de6ae3a55b2af7851951f59e49093b1fa2da authored almost 15 years ago by Hendrik Weisser <[email protected]>

fixed tag handling in AASequence

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6176 6adb6e08-d915-0410-9...

4fdf08ec40ad8b563629275e43e579e2d5c12b01 authored about 15 years ago by Andreas Bertsch <[email protected]>

removed debug output

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6170 6adb6e08-d915-0410-9...

2f78b29ed447213b9521d48308dce15f5278994f authored about 15 years ago by Alexandra Zerck <[email protected]>

removed debug output

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6169 6adb6e08-d915-0410-9...

b8540f65fcc78fb37659c89190c0ddd26d5a0727 authored about 15 years ago by Alexandra Zerck <[email protected]>

fixed some errors

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6168 6adb6e08-d915-0410-9...

00afeb06b2cd7b78892c109fa8f5b3e62c4b743b authored about 15 years ago by Alexandra Zerck <[email protected]>

TOPPAS: fixed warning, hopefully fixed error with qt 4.3

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6164 6adb6e08-d915-0410...

13e63d18e10694fac5a8b94ac035dba5177b198c authored about 15 years ago by Johannes Veit <[email protected]>

** fixed bug in MzXMLHandler.h: writing mzXML files with unsupported ionization method led to crash

** some cleanup

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6163 6adb...

ee43a6b06d05faeb1f8c49145aa526871a2fe452 authored about 15 years ago by Chris Bielow <[email protected]>