github.com/OpenMS/OpenMS commits | Ecosyste.ms: OpenCollective

fixed ConsensusID_2_test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6963 6adb6e08-d915-0410-9...

20243ae0d5a6d501355e735f40df1f4ad00f92a8 authored over 14 years ago by Sven Nahnsen <[email protected]>

fixed ConsensusID_test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6962 6adb6e08-d915-0410-9...

a2e735cc6c38410ad00b4633a0033a93d161482c authored over 14 years ago by Sven Nahnsen <[email protected]>

** SSE on 32bit Windows enabled (64bit has it by default)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6960 6adb6e08-d915-0410-9...

a4bdd21be48821f6e48cb9f586adeec6a850646c authored over 14 years ago by Chris Bielow <[email protected]>

** minor docu and clean up

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6959 6adb6e08-d915-0410-9...

032532ade50a37e5dfb6d48d477011f5414f9489 authored over 14 years ago by Chris Bielow <[email protected]>

** minor stuff

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6958 6adb6e08-d915-0410-9...

79462f514c7352cd6d243ad888b622a6c36eb3d4 authored over 14 years ago by Chris Bielow <[email protected]>

** fixed FalseDiscoveryRate segfault when no decoy hits present

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6957 6adb6e08-d915-0410-...

9aa14318cbd3bfc65b91c22c33309c051ce47c0d authored over 14 years ago by Chris Bielow <[email protected]>

** svn revision update now ignores if it cannot read the svn version and does nothing

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6956 6adb6e08-d915-0410-9...

2daa0993ea4144ef2bbf07a652afded7929d74c9 authored over 14 years ago by Chris Bielow <[email protected]>

** minor stuff

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6955 6adb6e08-d915-0410-9...

6fb1d5862a19d9579b31611252e0590003c1b73e authored over 14 years ago by Chris Bielow <[email protected]>

minor changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6954 6adb6e08-d915-0410-9...

696dac210375246c0b2b76797257e0bc9bd8aa75 authored over 14 years ago by Alexandra Zerck <[email protected]>

** removed incomplete classes for SILACAnalyzer (merge back in once branch is mature)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6952 6adb6e08-d915-0410-9...

9db5bfed6e32be3e888f6df51df26b27f0db81b7 authored over 14 years ago by Chris Bielow <[email protected]>

** cleaned up external code projects (the external libary now has some actual content)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6947 6adb6e08-d915-0410-9...

763aafa7bbde02873cd412bd29d27f3d26b4f57c authored over 14 years ago by Chris Bielow <[email protected]>

added option to pick peaks only in MS1 scans (solving ticket #130)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6945 6adb6e08-d915-0410-9...

146bf9d2987e8756b4a19105eb80705a6b5cc1c9 authored over 14 years ago by Hendrik Weisser <[email protected]>

** fixed some problems with memory depletion in TOPPView

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6944 6adb6e08-d915-0410-9...

8b54f7ecbb1d82dbac301dac247df01c4cea1d57 authored over 14 years ago by Chris Bielow <[email protected]>

New data structure for SILACAnalyzer

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6943 6adb6e08-d915-0410-9...

bea0bdf08baa150a066fa1062a06cea264db0f31 authored over 14 years ago by Steffen Sass <[email protected]>

New data structure for SILACAnalyzer

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6942 6adb6e08-d915-0410-9...

109597cfd6c1715efa597c4e45e0cbb0226dca6b authored over 14 years ago by Steffen Sass <[email protected]>

New data structure for SILACAnalyzer

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6941 6adb6e08-d915-0410-9...

7da64f8c90b846fc66b0f251ea34a96afa20103f authored over 14 years ago by Steffen Sass <[email protected]>

** more intuitive HELP of TOPP tools

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6940 6adb6e08-d915-0410-9...

ceda79521a3650d0675f9a1e79967cb99d6e4563 authored over 14 years ago by Chris Bielow <[email protected]>

** fixed warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6938 6adb6e08-d915-0410-9...

be388d23b6befafab218ac42443050fab730480c authored over 14 years ago by Chris Bielow <[email protected]>

small fix for Windows compatibility

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6937 6adb6e08-d915-0410-9...

233ab20a9aa50c72a65fb183cbaae1d5eb76e803 authored over 14 years ago by Hendrik Weisser <[email protected]>

fixed some warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6936 6adb6e08-d915-0410-9...

267582240b83060014fb3e98700e8c6c1ea96277 authored over 14 years ago by Stephan Aiche <[email protected]>

** fixed SVOutStream_test.C

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6935 6adb6e08-d915-0410-9...

1dadc2b33de8ff838782bde57e52dd253267a736 authored over 14 years ago by Chris Bielow <[email protected]>

** fixed TEST/SpectraMerger_test.C

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6934 6adb6e08-d915-0410-9...

305ae919b148d86d84a90527102fcb8f5c5787c8 authored over 14 years ago by Chris Bielow <[email protected]>

made sorting functions stable to ensure cross-platform consistency

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6933 6adb6e08-d915-0410-9...

a284eca75a5fb84161d6e3a935872550724db49f authored over 14 years ago by Hendrik Weisser <[email protected]>

updated CHANGELOG to include asymmetric rt profiles

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6932 6adb6e08-d915-0410-9...

cf1a8a20c2e703d3f4ae0d3b8b8c9f08f5f0617f authored over 14 years ago by Stephan Aiche <[email protected]>

added constructor for 'ProteinGroup' (hopefully fixing TOPP_IDFileConverter test failure)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6931 6adb6e08-d915-0410-9...

2da6d806545f08e434586aeb0b3cd1692705bba5 authored over 14 years ago by Hendrik Weisser <[email protected]>

handle 'inf' manually (otherwise different representations depending on platform)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6930 6adb6e08-d915-0410-9...

33294a186478c737e32035f43e121eb1f2273275 authored over 14 years ago by Hendrik Weisser <[email protected]>

** fixed spectramerger

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6929 6adb6e08-d915-0410-...

b100e5c04caea724d0cc49ba9dc41a5e7aaf58ba authored over 14 years ago by Chris Bielow <[email protected]>

'writeValueOrNan' now also handles 'inf' and '-inf'

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6928 6adb6e08-d915-0410-9...

caeb9277ee422e538db52db53e2cffb2944f5609 authored over 14 years ago by Hendrik Weisser <[email protected]>

fixed small testing bug in TraceFitter tests and conversion warning in TraceFitter base

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6927 6adb6e08-d915-0410-9...

872fed36a0163589202daa6c18004ccb48b1e13b authored over 14 years ago by Stephan Aiche <[email protected]>

** more rigid parsing of int lists (using "1,2" on the command line would not result in an error, but does now; correct is: "1 2")

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6926 6adb6e08-d915-0410-9...

07768ece782e0159c6ed1b53733603dbdecc517c authored over 14 years ago by Chris Bielow <[email protected]>

** fixed some warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6925 6adb6e08-d915-0410-9...

2f3f00212f5eede9afd4c99730fed9ec9d2e5036 authored over 14 years ago by Chris Bielow <[email protected]>

** updated CHANGELOG

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6924 6adb6e08-d915-0410-9...

efa55159dd9c000c185749ccaa253680739e9206 authored over 14 years ago by Chris Bielow <[email protected]>

added new test for IDPosteriorErrorProbability

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6923 6adb6e08-d915-0410-9...

30aae13ad1a5a008691107054c2f8491fda33f0f authored over 14 years ago by David Wojnar <[email protected]>

** fixed some warnings + minor stuff

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6922 6adb6e08-d915-0410-9...

daecce7faec449f88c02edd91211b15e8ea973b1 authored over 14 years ago by Chris Bielow <[email protected]>

Added new functionality to IDP.E.P. (splitting models by charge)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6921 6adb6e08-d915-0410-9...

81ebb72914c318e4571df6f6b4e107e32af713da authored over 14 years ago by David Wojnar <[email protected]>

adapted to recent change of String::substr

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6920 6adb6e08-d915-0410-9...

92a818de084b8bae7ac5c56decf8054f75a9a20e authored over 14 years ago by Hendrik Weisser <[email protected]>

changed substr() behaviour and the corresponding calls in the library #143

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6919 6adb6e08-d915-0410-9...

3c83b390bd7486bfd5072149258f100bcc17efd5 authored over 14 years ago by Stephan Aiche <[email protected]>

minor changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6918 6adb6e08-d915-0410-9...

412112f19214535e008492298503d681d4a9f7bc authored over 14 years ago by Alexandra Zerck <[email protected]>

fixed bug #148 ('XMass files are not correctly detected...')

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6916 6adb6e08-d915-0410-9...

75712c872a32f8e8065edb378b649decd243cf01 authored over 14 years ago by Hendrik Weisser <[email protected]>

** disabled LOG_DEBUG's default association with a stream

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6915 6adb6e08-d915-0410-9...

f599263f9373bb374a51476bb0b8061728b3659f authored over 14 years ago by Chris Bielow <[email protected]>

reverted changes of rev. 6912 (caused lots of 'ambiguous overload' errors on 64 bit system)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6914 6adb6e08-d915-0410-9...

0a22d60fd08f148d089caa25f690d610b3b2662a authored over 14 years ago by Hendrik Weisser <[email protected]>

added option to show unassigned peptide IDs by peptide mass; improved appearance of button menus

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6913 6adb6e08-d915-0410-9...

6ec7bc35deec8dcad4872fb52f4f3695a1116452 authored over 14 years ago by Hendrik Weisser <[email protected]>

fixed bug #143 ('Incompatibility between String and string methods')

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6912 6adb6e08-d915-0410-9...

9ea8988b27c6de330a89456ac5823877cd800ec0 authored over 14 years ago by Hendrik Weisser <[email protected]>

small docu fix

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6911 6adb6e08-d915-0410-9...

a30edf087fb6e536cb6de54c9508df7627430c9a authored over 14 years ago by Hendrik Weisser <[email protected]>

** removed rest of CGAL dependencies

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6910 6adb6e08-d915-0410-9...

af936a543d43d21000e6f04d773bff2281f1e52c authored over 14 years ago by Chris Bielow <[email protected]>

** re-enabled CGAL (for now) due to link problems under linux

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6909 6adb6e08-d915-0410-9...

de5e66e5e1c459541d363593550a357b8b481720 authored over 14 years ago by Chris Bielow <[email protected]>

fixed compile error

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6908 6adb6e08-d915-0410-9...

66c2ffc6b163f8bd1613fe3b13f7a2eeb0f8aa8d authored over 14 years ago by Alexandra Zerck <[email protected]>

** removed last CGAL dependency

** replaced ConvexHull2D implementation (not really convex any more)
** cleaned up Feature.C and ...

2bdae7b17440756ebc793333d2d0ab72d615bb40 authored over 14 years ago by Chris Bielow <[email protected]>

removed extra qualification

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6906 6adb6e08-d915-0410-9...

52d3007adc29a0f0a2f150b3f4ffdf9c710c73bb authored over 14 years ago by Hendrik Weisser <[email protected]>

included some recent changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6905 6adb6e08-d915-0410-9...

b2ca2e5d2f1b4bff6cd261fa2beefa93e36a127d authored over 14 years ago by Hendrik Weisser <[email protected]>

added docu section about deprecated parameters, added myself as author

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6904 6adb6e08-d915-0410-9...

70a5c0ca1d43351994ca315936d46a96cc5a0ad7 authored over 14 years ago by Hendrik Weisser <[email protected]>

added some diagnostic output

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6903 6adb6e08-d915-0410-9...

690de2cf5b00a373b7b23a39f4a2f644ef507140 authored over 14 years ago by Hendrik Weisser <[email protected]>

** added zooming beyong zoom stack + docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6902 6adb6e08-d915-0410-9...

9b8a013d5156fd01653ebdfb37a85d03308ebfbb authored over 14 years ago by Chris Bielow <[email protected]>

** fixed compile warnings in FeatureFinder tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6901 6adb6e08-d915-0410-9...

0bd824d21abf9ff1526f8c2b524d50e0cf0f19d4 authored over 14 years ago by Chris Bielow <[email protected]>

** started fixing DigestorMotif tool

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6900 6adb6e08-d915-0410-9...

9016ecedf7007208246247dbd4f680b68a20f416 authored over 14 years ago by Chris Bielow <[email protected]>

** test speedup

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6899 6adb6e08-d915-0410-9...

42b8eb677170f61867a5ca21a659fc983398cf88 authored over 14 years ago by Chris Bielow <[email protected]>

** removed compile flag

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6898 6adb6e08-d915-0410-9...

8090e10c39a02842aa871c434a529e012a017fa3 authored over 14 years ago by Chris Bielow <[email protected]>

deleted Digestor_motif.C [Sven Nahnsen's DigestorMotif had been renamed.]

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6897 6adb6e08-d915-0410-9...

1c28767736214839ea0f33d3eb7c16492e72b18f authored over 14 years ago by Lars Nilse <[email protected]>

added new UTILS tool MassCalculator

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6896 6adb6e08-d915-0410-9...

123a8bc4846ebf440aefceb4c1186d39b7031b41 authored over 14 years ago by Hendrik Weisser <[email protected]>

repaired DigestorMotif

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6895 6adb6e08-d915-0410-9...

9bd3011afae1ec93586e874cbc06522ca5af0c51 authored over 14 years ago by Sven Nahnsen <[email protected]>

updated tests after recent changes in ProteinQuantifier

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6894 6adb6e08-d915-0410-9...

5b612552d6fc12e656db2dfbfe693518ace57f23 authored over 14 years ago by Hendrik Weisser <[email protected]>

new util digestor_motif.C

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6893 6adb6e08-d915-0410-9...

afef73bd1a92d5fbd2657e28aaa67b3c023b642f authored over 14 years ago by Sven Nahnsen <[email protected]>

new util digestor_motif

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6892 6adb6e08-d915-0410-9...

55993443566218c7c7512e93db034d43a2a4cc43 authored over 14 years ago by Sven Nahnsen <[email protected]>

** corrected TOPPAS categories

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6890 6adb6e08-d915-0410-9...

07984d596fed574e91e714eb83dfd9417e0e66f7 authored over 14 years ago by Chris Bielow <[email protected]>

small docu fixes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6889 6adb6e08-d915-0410-9...

edfe45559298189dfa78af2507eba7ddaf5390f6 authored over 14 years ago by Hendrik Weisser <[email protected]>

fixed test error

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6888 6adb6e08-d915-0410-9...

e5ddfbc57697a29a0dc180031c7a9d67f4ecc895 authored over 14 years ago by Stephan Aiche <[email protected]>

added option to prevent merging of features with different peptide annotations

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6887 6adb6e08-d915-0410-9...

f8a5aa6ff9deab549c84e4ba3802b6729025a81f authored over 14 years ago by Hendrik Weisser <[email protected]>

added check to avoid crash if expected MetaValue is missing

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6886 6adb6e08-d915-0410-9...

f29ef80d379c85d64e4bb62e22a719e100b15d9d authored over 14 years ago by Hendrik Weisser <[email protected]>

added first version of Centroided FeatureFinder with asymmetric elution profiles

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6885 6adb6e08-d915-0410-9...

023af334fe89296f55bcfc7bdaaa0abf4134988c authored over 14 years ago by Stephan Aiche <[email protected]>

added support for ProteinProphet results

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6884 6adb6e08-d915-0410-9...

4fa90056627419e6e3f3f0dce30665d4f1be2c3c authored over 14 years ago by Hendrik Weisser <[email protected]>

added workaround for missing 'charge' attribute

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6883 6adb6e08-d915-0410-9...

5569c0448990caedc33c972064808b60e9f929d2 authored over 14 years ago by Hendrik Weisser <[email protected]>

fixed created_test.php to use new nested-classes test names

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6882 6adb6e08-d915-0410-9...

9c92b915a22053c6c0a45e8f61599b69edf07182 authored over 14 years ago by Stephan Aiche <[email protected]>

** fixed some tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6881 6adb6e08-d915-0410-9...

2fc34ac60c6153d14200a672599e66c4bc4f57d9 authored over 14 years ago by Chris Bielow <[email protected]>

check for parameter consistency

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6880 6adb6e08-d915-0410-9...

221fe1fd87b58c1e9d5d4610e10646b57a9f3efd authored over 14 years ago by Alexandra Zerck <[email protected]>

spelling fix

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6879 6adb6e08-d915-0410-9...

3bae09128ad346d2d8cd2bdbeb7eab7281218cef authored over 14 years ago by Hendrik Weisser <[email protected]>

** fixed a warning and some default param values

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6877 6adb6e08-d915-0410-9...

925e305b7cddca6940aefc7f220c9a1838909eb3 authored over 14 years ago by Chris Bielow <[email protected]>

IDMapper overhaul: improved parameter handling (split 'use_centroids', renamed some, changed default m/z tolerance), simplified code for feature map annotation, added handling of feature m/z types, added exhaustive documentation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6876 6adb6e08-d915-0410-9...

8626630521e4be44c2c7241b0b421af1836b6c02 authored over 14 years ago by Hendrik Weisser <[email protected]>

changed separator for output of alternative options

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6875 6adb6e08-d915-0410-9...

96bdfc3a9bc97e322ed03b395b76fdaeb872b052 authored over 14 years ago by Hendrik Weisser <[email protected]>

minor improvements in formatting of output

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6874 6adb6e08-d915-0410-9...

f01d94587b7be3ad6fb7c64ee59b5db799fc2304 authored over 14 years ago by Hendrik Weisser <[email protected]>

added option to merge idXML files derived from pepXML and protXML (solving ticket #126), updated tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6873 6adb6e08-d915-0410-9...

139edb04116bbcd94ef69e8510f65a9d3468e1c4 authored over 14 years ago by Hendrik Weisser <[email protected]>

minor beautification

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6872 6adb6e08-d915-0410-9...

17d8bcb4c40835fdcc2c30b656d6d6363d707b63 authored over 14 years ago by Hendrik Weisser <[email protected]>

added option 'use_feature_rt'

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6871 6adb6e08-d915-0410-9...

c40a8ecd3bbfd48fb9595fb27196d56e148087bb authored over 14 years ago by Hendrik Weisser <[email protected]>

added test case for MapAligner (identification)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6870 6adb6e08-d915-0410-9...

b0945431eda8255b47b1b465dd7c05929e07d713 authored over 14 years ago by Hendrik Weisser <[email protected]>

excluded non-public nested classes from checker to avoid reporting untestable methods

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6869 6adb6e08-d915-0410-9...

351b215e2a40dc05ebb35b15adf140f6da7bc838 authored over 14 years ago by Stephan Aiche <[email protected]>

removed unnecessary ctor from PeakArea_ (PPCWT) on behalf of Alex

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6868 6adb6e08-d915-0410-9...

0d6a5955eaf72db5ab6baec9dc4ec36f3252b16a authored over 14 years ago by Stephan Aiche <[email protected]>

added test for nested class

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6867 6adb6e08-d915-0410-9...

cc8516cfba993b38b6924ffc3baab66a600ddeb2 authored over 14 years ago by Alexandra Zerck <[email protected]>

** testing compiler flag

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6866 6adb6e08-d915-0410-9...

7be91535109faaffae2f6786d14ed520bd38f8a6 authored over 14 years ago by Chris Bielow <[email protected]>

customized tests to be compliant with new checker

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6865 6adb6e08-d915-0410-9...

0995665bb017eed459e58f0ddc4cee7e1d5cf0f5 authored over 14 years ago by Stephan Aiche <[email protected]>

checker script has now a more convenient output for nested classes tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6864 6adb6e08-d915-0410-9...

2cb457d50d8250f8e50bc5789bf8281ddac31d2e authored over 14 years ago by Stephan Aiche <[email protected]>

removed the remains of multidimensional peakshapes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6863 6adb6e08-d915-0410-9...

c4d427a333bd74d682b36c79b40f5d98275ac82e authored over 14 years ago by Alexandra Zerck <[email protected]>

fixed checker error

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6862 6adb6e08-d915-0410-9...

173e6cfbe85f9f84e13301023ea9a70da27566e3 authored over 14 years ago by Alexandra Zerck <[email protected]>

fixed yesterday's commit

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6859 6adb6e08-d915-0410-9...

1934decc8863b6ebc3724db394ada3291bbfa283 authored over 14 years ago by Alexandra Zerck <[email protected]>

small docu improvements

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6858 6adb6e08-d915-0410-9...

f86c9fab883fa09571eba9a26730b267c57e3d11 authored over 14 years ago by Hendrik Weisser <[email protected]>

fixed checker errors

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6857 6adb6e08-d915-0410-9...

35c783d1e4d45ba28aea0ea4afe6c3601634e868 authored over 14 years ago by Alexandra Zerck <[email protected]>

reverted svn xml fix; it does not work on checker machine; needs some further inspection

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6856 6adb6e08-d915-0410-9...

18980679b971b568ee99dc1806c523c5f18ffac8 authored over 14 years ago by Stephan Aiche <[email protected]>

reworked handling of flags in LayerData

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6855 6adb6e08-d915-0410-9...

d7a7c7b30dbff24d20fa55e866d33b7c026b54df authored over 14 years ago by Hendrik Weisser <[email protected]>

'insertGroup' renamed, added 'findHit' test case

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6854 6adb6e08-d915-0410-9...

35e17fb49d2dc7adfbc1b8cd55fa8d3106627603 authored over 14 years ago by Hendrik Weisser <[email protected]>

fixed wrong test declaration in Peak2D_test.C

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6853 6adb6e08-d915-0410-9...

64d69d1966fb2e2f14988807dfc28bcc57a6c1b8 authored over 14 years ago by Stephan Aiche <[email protected]>

fixed problem with svn >=1.6 and keywords test in checker.php

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6852 6adb6e08-d915-0410-9...

587a5b7b09a154cfa37ab90ebb0cdcb5274309a1 authored over 14 years ago by Stephan Aiche <[email protected]>

added some more tests for nested classes to Peak1D, Peak2D, Map and MSSpectrum

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6851 6adb6e08-d915-0410-9...

2b44c651a11d8c837f4fe39e606f921dc83c2ebc authored over 14 years ago by Stephan Aiche <[email protected]>