github.com/OpenMS/OpenMS commits | Ecosyste.ms: OpenCollective

some more docu and refactoring of centroided FF

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7085 6adb6e08-d915-0410-9...

1d4fdb48a994a2a47877853fb7c0b1ea37fd8a76 authored over 14 years ago by Stephan Aiche <[email protected]>

** SP1 requirement for contrib stated more explicitly

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7084 6adb6e08-d915-0410-9...

041e9518c5d97c901e92a8710fa81e22b79094f7 authored over 14 years ago by Chris Bielow <[email protected]>

** removed 'setByUser_()' function as it was very confusing and lead to wrong behaviour when using ini-files with default values

** fixed TOPPBase_test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7...

b31615b338b8e75773d8af9498e44ec441d993a7 authored over 14 years ago by Chris Bielow <[email protected]>

SVNRevisionUpdater is now able to distinguish valid svnversion output and error messages

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7080 6adb6e08-d915-0410-9...

a503140b00a2e27dcc9b737809b7ed41a58e185b authored over 14 years ago by Stephan Aiche <[email protected]>

** fixed some warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7079 6adb6e08-d915-0410-9...

2e499757f731e2614cd90d2a7687c68559953521 authored over 14 years ago by Chris Bielow <[email protected]>

no capitalization of parameter categories (for consistency with algorithm parameter sections)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7078 6adb6e08-d915-0410-9...

dc8935d4752bbcc947071bc5e1a795844e621332 authored over 14 years ago by Hendrik Weisser <[email protected]>

organized some parameters into categories

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7077 6adb6e08-d915-0410-9...

3cf06e83bbeed30e5c4d4b22db163ace41acdfcc authored over 14 years ago by Hendrik Weisser <[email protected]>

fixed calls to 'inputFileReadable_' and 'outputFileWritable_' that were broken by changes in TOPPBase

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7076 6adb6e08-d915-0410-9...

32c4693d0ff47d3ae1f542daab423d16a72bb3eb authored over 14 years ago by Hendrik Weisser <[email protected]>

** fixed tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7075 6adb6e08-d915-0410-9...

4bd20c52d7b1bf13f066e2c6986847d7b0fdd5e1 authored over 14 years ago by Chris Bielow <[email protected]>

added output of processing statistics, fixed usage of empty protein identifications

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7074 6adb6e08-d915-0410-9...

f2ef865ca3192db8880947f48c088ebce1532a2a authored over 14 years ago by Hendrik Weisser <[email protected]>

** OMSSAAdapter docu improved

** better output for IDFilter

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/Op...

4f82849259c59e1f58717f519630aafd9e846ad0 authored over 14 years ago by Chris Bielow <[email protected]>

** better error message then an input file is not found

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7071 6adb6e08-d915-0410-9...

1ef4df4b5c427b33b81a4c982006c1efac2a4fe3 authored over 14 years ago by Chris Bielow <[email protected]>

** fixed BIG bug in DecoyDatabase (wrong default reverse string '_ref')

** some smaller changes to IDFilter

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open...

b099ccfb760485e9229f9509002bd9aa5efb051a authored over 14 years ago by Chris Bielow <[email protected]>

** minor fix

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7069 6adb6e08-d915-0410-9...

c7d08fcc913cd71a46cc36263da4ca7ceeee60fe authored over 14 years ago by Chris Bielow <[email protected]>

** introduced TOPP:subsections (useful for registering command-line parameters containing a ':' in their name).

use registerTOPPSubsection_() in a TOPP tool's registerOptionsAndFlags_() to register such par...

ba753604905f8c6682267c807e4071703927fb9b authored over 14 years ago by Chris Bielow <[email protected]>

** better error checking in FalseDiscoveryRate

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7067 6adb6e08-d915-0410-9...

c03c26755a471d5851d1a940f3f591ed8441c80b authored over 14 years ago by Chris Bielow <[email protected]>

prepared some more intelligent elution profile fitting

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7066 6adb6e08-d915-0410-9...

a5c55f76058150ea95e6e3301bc7b915b5483b49 authored over 14 years ago by Stephan Aiche <[email protected]>

** whops. I meant IDFilter :)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7064 6adb6e08-d915-0410-9...

7269d0bee23a6031fbc68a977c9ff6d6dec95222 authored over 14 years ago by Chris Bielow <[email protected]>

** completely reworked IDMapper interface, to make it more understandable

** new IDMapper docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7063...

867b90da93d8b76698beaf5e4e2d03ad8a47e777 authored over 14 years ago by Chris Bielow <[email protected]>

fixed typos

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7062 6adb6e08-d915-0410-9...

c34c331660f810f3ece1927c5f7894005f477d98 authored over 14 years ago by Hendrik Weisser <[email protected]>

StablePairFinder: reintroduced condition (best_companion_distance * second_nearest_gap <= second_best_companion_distance)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7061 6adb6e08-d915-0410-9...

f8f82b441b86b77933a7bd33887085740c579ce9 authored over 14 years ago by Lars Nilse <[email protected]>

fixed small bug introduced in [7058]

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7060 6adb6e08-d915-0410-9...

ca79403e3debcd07381ccff813be8a17bd7b3770 authored over 14 years ago by Stephan Aiche <[email protected]>

correction to yesterday's StablePairFinder commit

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7059 6adb6e08-d915-0410-9...

de7c6535d22e48e510db70c3544e03ff63a23a56 authored over 14 years ago by Lars Nilse <[email protected]>

added some more docu to centroided feature finder and removed some performance glitches

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7058 6adb6e08-d915-0410-9...

272515d398bc1ce7b5bc0e2cb6f8ba113ede2ab6 authored over 14 years ago by Stephan Aiche <[email protected]>

** ParamEditor usability improved (change to distant directory if input/output file)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7057 6adb6e08-d915-0410-9...

823c0f727ace7cb9018122a5cfd059a05a0a0d69 authored over 14 years ago by Chris Bielow <[email protected]>

StablePairFinder modiefied: +++ OLD VERSION +++ features A and B become a pair if (1) A best friend of B (2) B best friend of A (3) distance < 1 (4) distance * some_parameter < second_nearest_distance +++ NEW VERSION +++ (1) as above (2) as above (3') abs(RT_A - RT_B) < delta RT (4') abs(mz_A - mz_B) < delta mz +++ COMMENTS +++ 'distance' remains to be used to determine friends and the quality of the pair.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7056 6adb6e08-d915-0410-9...

a4bf5af847b658181d428275372d3843201e0e02 authored over 14 years ago by Lars Nilse <[email protected]>

** docu restructuring

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7053 6adb6e08-d915-0410-9...

ff9dbae142f87c7e314b8484d525b560dddb192e authored over 14 years ago by Chris Bielow <[email protected]>

Ticket #157 done.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7052 6adb6e08-d915-0410...

e02829ea7bc9d8bec8be402fbb441c5e1689c8db authored over 14 years ago by Johannes Veit <[email protected]>

Fixed #162

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7050 6adb6e08-d915-0410...

3fe2ffbed657c65a7d19f49f42ac236b40d3e826 authored over 14 years ago by Johannes Veit <[email protected]>

Fixed #161

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7049 6adb6e08-d915-0410...

996552e5d880c970496281a99eec2b7d8addc0fd authored over 14 years ago by Johannes Veit <[email protected]>

Fixed ticket #160, refreshed parameters of example workflows

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7048 6adb6e08-d915-0410...

2b32d0231073c5ea93a4b914d724314e392b8ab2 authored over 14 years ago by Johannes Veit <[email protected]>

fixed invalid defaults in TOPPBase_test and wrong and operator in ConsensusID

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7047 6adb6e08-d915-0410-9...

849cfaeb5e8fc81128c1f9ff4969df4694223999 authored over 14 years ago by Stephan Aiche <[email protected]>

** another fix

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7046 6adb6e08-d915-0410-9...

a0f5f383eff44db1e8a30e64273a50c87cb2518b authored over 14 years ago by Chris Bielow <[email protected]>

** fix of restriction testing

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7045 6adb6e08-d915-0410-9...

cc5c9bde23719f0e0277308500e11e740a46292a authored over 14 years ago by Chris Bielow <[email protected]>

** forced TOPP restrictions to be tested when set (right now invalid configuration files might be written)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7044 6adb6e08-d915-0410-9...

d518a3ee389cf1c15ee24aa19e7e44096beb5d06 authored over 14 years ago by Chris Bielow <[email protected]>

** peptide charge is now propagated in ConsensusID

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7042 6adb6e08-d915-0410-9...

4f9c9c6830ddeaee7d979c6a3f0706b5116680b2 authored over 14 years ago by Chris Bielow <[email protected]>

** more robust loading of .INI files for our GUI apps (TOPPAS, TOPPView), as their ini files might be corrupt (as proven 5 min ago)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7041 6adb6e08-d915-0410-9...

5fb3f86e6b96718d8e27867a0b9c9e6dd9635110 authored over 14 years ago by Chris Bielow <[email protected]>

** fixed a fatal bug in FDR

** docu improvement as suggested by OpenMS users
** some output stats of FeatureLinker to see if ...

9f944d547027f96b962072f19195ff3d34ae1e72 authored over 14 years ago by Chris Bielow <[email protected]>

** fixed warning

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7039 6adb6e08-d915-0410-9...

f12f9435511994fbae15ee4395f81108e82fecb1 authored over 14 years ago by Chris Bielow <[email protected]>

** minor stuff

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7038 6adb6e08-d915-0410-9...

4bbbb9ff83a5fae846161ec4fd1ab6e83184499d authored over 14 years ago by Chris Bielow <[email protected]>

** fixed bug in IDMapper, causing segfault when input FeatureMap is empty

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7037 6adb6e08-d915-0410-9...

d3575fb915479a445c141da2f54de33a1cdf6971 authored over 14 years ago by Chris Bielow <[email protected]>

updated test of EGHTraceFitter and added default instance of FeatureFinderAlgorithmPicked

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7036 6adb6e08-d915-0410-9...

b42e4a1fb25595efcc06fc2a0f8fada3d21be68c authored over 14 years ago by Stephan Aiche <[email protected]>

** adapter executables (xtandem.exe) etc can now be in %PATH% and are still found even though they are specified as INPUT_FILE

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7035 6adb6e08-d915-0410-9...

ad51243e4f9b44c9753fcc57185a65715cf36e8d authored over 14 years ago by Chris Bielow <[email protected]>

** tool categories are no longer saved to TOPPAS.ini (causes warnings when tools are removed etc).

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7034 6adb6e08-d915-0410-...

4e74dbe7cb9940580f8c1e8057fb6a40d91a5e19 authored over 14 years ago by Chris Bielow <[email protected]>

** testing new VS compiler flag

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7033 6adb6e08-d915-0410-9...

0a39b4f61a30090830c0db475b3a74fcf13204f8 authored over 14 years ago by Chris Bielow <[email protected]>

Corrected for nonMacs

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7032 6adb6e08-d915-0410-9...

5e4aac981dd3004639d89ab6b029b8522d330912 authored over 14 years ago by David Wojnar <[email protected]>

IDPEP outputs PEP for really small data sets, too.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7031 6adb6e08-d915-0410-9...

3ea37e93f990895d7a47bf4bc9e85131ad006c6b authored over 14 years ago by David Wojnar <[email protected]>

** fixed bug in FF_picked, causing Segfault when computing IsotopeDistribution at the edge of the m/z range

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7030 6adb6e08-d915-0410-9...

99be820efb0451cb9b4c7ecf60b4f5260f7688b3 authored over 14 years ago by Chris Bielow <[email protected]>

** updated public FAQ for memory issues

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7029 6adb6e08-d915-0410-9...

f163ece61b914a120ddce8d0d0fca25c5de9deb8 authored over 14 years ago by Chris Bielow <[email protected]>

** some more FAQ

** small FF improvement

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7...

5f02b7adca77fe44336230ffba1377ba3842f051 authored over 14 years ago by Chris Bielow <[email protected]>

bug correction: fid coded in signed int 32b format

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7026 6adb6e08-d915-0410-9...

9d4e465565aa4c9c02a0cd79e9a2bb418ac25e44 authored over 14 years ago by Guillaume Belz <[email protected]>

** removed references to non-existing TextImporter

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7025 6adb6e08-d915-0410-9...

84dd52d06f190bbd789e4d52c667e2eb45b96b47 authored over 14 years ago by Chris Bielow <[email protected]>

** show RT in 1D View

** fixing Ticket #98

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7022...

b132442ca78319d768db0184dd99f918ab4c15c8 authored over 14 years ago by Chris Bielow <[email protected]>

** allow extraction of TAU parameter from EGHTraceFitter in DebugMode

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7021 6adb6e08-d915-0410-9...

9e9f4970d0fc72a8195d645978ec05923246c8e4 authored over 14 years ago by Chris Bielow <[email protected]>

** TOPPAS now supports drag'n'drop file pipelines onto the Widget

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7020 6adb6e08-d915-0410-9...

254a8a0fbc2ff2ee6d51678fd3bdfaec8c40ef46 authored over 14 years ago by Chris Bielow <[email protected]>

** fixed fatal bug in Param::store() when storing empty Param.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7019 6adb6e08-d915-0410-...

82bfd473395e407047fbe9161778479aea7fd910 authored over 14 years ago by Chris Bielow <[email protected]>

** better error message when DTA file is corrupt

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7018 6adb6e08-d915-0410-9...

5502ab6a1898c3498512f287555da4b5789dcf18 authored over 14 years ago by Chris Bielow <[email protected]>

Bugfix: InclusionExclusionListCreator should work in TOPPAS now.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7017 6adb6e08-d915-0410...

652978afcb3683900f4a0a187f97d1eaf71b400d authored over 14 years ago by Johannes Veit <[email protected]>

** more verbose information when updating INI files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7016 6adb6e08-d915-0410-9...

5b7feb417c388db348d35552405e4df5b3ff9c1c authored over 14 years ago by Chris Bielow <[email protected]>

** fixed tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7015 6adb6e08-d915-0410-9...

095ee7c71a949239a458b88a6e4b304154e8acb0 authored over 14 years ago by Chris Bielow <[email protected]>

** fixed Windows compile error due to missing boost::math:: for isnan

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7014 6adb6e08-d915-0410-9...

17cbf2bdb1483d718f8c6cbce44308af17b12fbf authored over 14 years ago by Chris Bielow <[email protected]>

Fixed ticket #154

(other than the fact that logging output still goes to stdout when refreshing tool parameters)

...

33f9fb3cf5a08a6e3bd22415eb89c96e3886f07d authored over 14 years ago by Johannes Veit <[email protected]>

** fixed some bugs in InclusionExclusionListCreator

** added FASTA file type recognition

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/op...

1a7375b325297b6dfbc0c1299145aff7caad5b4c authored over 14 years ago by Chris Bielow <[email protected]>

** fixed OMSSAAdapter (QProcess behaves weird when supllying arguments)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7011 6adb6e08-d915-0410-9...

47290ec24b608c878ed659ba3b211baa7f0fa572 authored over 14 years ago by Chris Bielow <[email protected]>

Added test for split_charge flag set (OMSSA)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7010 6adb6e08-d915-0410-9...

67b5631e99a5394c8dff5a1f2ba17ab73ee29c89 authored over 14 years ago by David Wojnar <[email protected]>

bug fix

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7009 6adb6e08-d915-0410-9...

811e4c924884fcada1734c2b5cafaaa299e169fe authored over 14 years ago by David Wojnar <[email protected]>

changed noise model in raw signal simulator - we now have a white noise added to all points and feature intensity error that is applied to the complete feature and not only to single points

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7008 6adb6e08-d915-0410-9...

de4f5fa2b47d470bfc0daa4451ccfbb87c264275 authored over 14 years ago by Stephan Aiche <[email protected]>

fixed missing utils problem in mac os x packages and added some more text to the missing contrib error message to avoid confusion when using relative pathes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7007 6adb6e08-d915-0410-9...

e6c3627a9326eb828f9ca11d123d420fb72b8df7 authored over 14 years ago by Stephan Aiche <[email protected]>

** fixed broken tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7006 6adb6e08-d915-0410-9...

d85e27c32f73d25a6ea857a6d0492ab0e05309c3 authored over 14 years ago by Chris Bielow <[email protected]>

** fixed doc

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7005 6adb6e08-d915-0410-9...

7034c2034c38b63446625dad765732afaa9736c3 authored over 14 years ago by Chris Bielow <[email protected]>

** fixed RTSimulation test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7004 6adb6e08-d915-0410-9...

5c5413fce8df0b2a2e50f71b46dbbd8ca4c0ba5e authored over 14 years ago by Chris Bielow <[email protected]>

** contrib dir can now be specified as relative directory and svm.o will still be found

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7003 6adb6e08-d915-0410-9...

38061db8f812c635a3605fbfd59867743dec04fb authored over 14 years ago by Chris Bielow <[email protected]>

** enabled ppm distance for StablePairFinder + docu update

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7002 6adb6e08-d915-0410-9...

20d527374d13b045d6f931f3d4a54ef310bc3e82 authored over 14 years ago by Chris Bielow <[email protected]>

** fixed wrong error message in Param.C

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7001 6adb6e08-d915-0410-9...

f8073603b60535ea7143a209cc6919c5d0c70d1b authored over 14 years ago by Chris Bielow <[email protected]>

** fixed compile error

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7000 6adb6e08-d915-0410-9...

69c574f2d726cdff3fc7d36a5115809fc3b2475a authored over 14 years ago by Chris Bielow <[email protected]>

** replaced calls to system() with QProcess() to ensure automatic escaping of arguments (e.g. pathes with spaces)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6999 6adb6e08-d915-0410-...

70d278dad79f389a94f3867f0e8a038d4e63dbfc authored over 14 years ago by Chris Bielow <[email protected]>

** fixed Ticket #64

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6998 6adb6e08-d915-0410-9...

934ff38ed1d60bed6ae33ca4381ebe6746ea619a authored over 14 years ago by Chris Bielow <[email protected]>

** minor stuff

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6997 6adb6e08-d915-0410-9...

b8dcabee88f8a676d8bae41ff52ae5a4ba833c02 authored over 14 years ago by Chris Bielow <[email protected]>

** changes to simulator (+ todo's)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6996 6adb6e08-d915-0410-9...

28357581a146ca86fa0bf1d46d4372f0128acda5 authored over 14 years ago by Chris Bielow <[email protected]>

fixed regex in Log* tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6995 6adb6e08-d915-0410-9...

caa4eaadfaaa0eace59a0610ea6fe017b0253f33 authored over 14 years ago by Stephan Aiche <[email protected]>

changed computation of boundaries to be more robust with low quality fits

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6994 6adb6e08-d915-0410-9...

caefbf35732afc3bf3447f4c7d0f316d5d063820 authored over 14 years ago by Stephan Aiche <[email protected]>

** fixed index out-of-bounds error in LogConfigHandler

** some docu...

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6992 6adb...

e8e0a025ee9dac3657967532e14156087293cbf9 authored over 14 years ago by Chris Bielow <[email protected]>

hopefully fixed the windows errors from last night

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6991 6adb6e08-d915-0410-9...

5a359d64ad068c62d6b3e33969922c24649fcd0c authored over 14 years ago by Stephan Aiche <[email protected]>

fixed requirement of 'out' parameter

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6989 6adb6e08-d915-0410-9...

252f5e7c50355145e6ca61730193dedac0ed6d49 authored over 14 years ago by Hendrik Weisser <[email protected]>

set log type for progress logging

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6988 6adb6e08-d915-0410-9...

1273384cd31cfc6589b276ee6efa2d3ab0617d95 authored over 14 years ago by Hendrik Weisser <[email protected]>

** build system clean up

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6986 6adb6e08-d915-0410-9...

05b5785864e88edc5e43f803435606a09c46747d authored over 14 years ago by Chris Bielow <[email protected]>

fixed missing svn properties and const_iterator for windows

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6985 6adb6e08-d915-0410-9...

7498a70b341896eadb4b222e4abd4d2dfc160313 authored over 14 years ago by Stephan Aiche <[email protected]>

added StreamHandler and LogConfigHandler incl. corresponding tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6983 6adb6e08-d915-0410-9...

60f63e3927fb8bf9e615de297a97538c51fb52a3 authored over 14 years ago by Stephan Aiche <[email protected]>

** fix warning

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6982 6adb6e08-d915-0410-9...

612e6cb68d726ef87601ff94962efd9920d96a17 authored over 14 years ago by Chris Bielow <[email protected]>

Closed ticket #116

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6981 6adb6e08-d915-0410...

455b5bf953c0ca5138cd30f78908a26be9db89ae authored over 14 years ago by Johannes Veit <[email protected]>

TOPPAS: F5 (run) works from every widget now.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6979 6adb6e08-d915-0410...

6d8f5066b3f26e33e8882a505da7ed0914e3dbd0 authored over 14 years ago by Johannes Veit <[email protected]>

Fixed ticket #87

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6977 6adb6e08-d915-0410...

14c5e83dedc1d0bb70f43b80972e4090fec6f189 authored over 14 years ago by Johannes Veit <[email protected]>

some docu fixes (needs work, though)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6976 6adb6e08-d915-0410-9...

9c69cc6a41af1d2af71fc01c79ea0f9699e8024a authored over 14 years ago by Hendrik Weisser <[email protected]>

added check for parameter validity

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6973 6adb6e08-d915-0410-9...

687d9e88902e22f57505294b1756419182188b4a authored over 14 years ago by Hendrik Weisser <[email protected]>

minor change to required parameters

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6970 6adb6e08-d915-0410-9...

b0e1cf2eba4f344a86343014e683af0a1d5641c4 authored over 14 years ago by Hendrik Weisser <[email protected]>

fixed some checker errors

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6969 6adb6e08-d915-0410-9...

be40a86eff95624a1c2fc3ac8bebd5c5a42c6748 authored over 14 years ago by Stephan Aiche <[email protected]>

** minor reformatting

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6968 6adb6e08-d915-0410-9...

004aafb185f2e2222a7a735a25551ff3c0e53cb8 authored over 14 years ago by Chris Bielow <[email protected]>

** fixed usage of "&" vs "&&" in ConsensusID

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6967 6adb6e08-d915-0410-9...

f47c4285b4055e8ffb0952123ebd6e29231880bd authored over 14 years ago by Chris Bielow <[email protected]>

new version ConsensusID

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6965 6adb6e08-d915-0410-9...

e35b682cc877f96d7d8b517670d58ac5c1a61d7a authored over 14 years ago by Sven Nahnsen <[email protected]>

fixed ConsensusID_1_test and ConsensusID_3_test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@6964 6adb6e08-d915-0410-9...

e20e2021ed076b184416ba1afaa21a0e24e184cb authored over 14 years ago by Sven Nahnsen <[email protected]>