github.com/OpenMS/OpenMS commits | Ecosyste.ms: OpenCollective

fixed paths in example workflow files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.7@7206 6adb6...

b60e344530396c7dddb7d14de750d3db799b51b7 authored about 14 years ago by Johannes Veit <[email protected]>

fixed ticket #166 (Looking at input files stops running workflow)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.7@7205 6adb6...

fd5e5b4256784641f02da9d26a8f448e781a9bb0 authored about 14 years ago by Johannes Veit <[email protected]>

forced cmake 2.8.1 on mac to avoid problem with contrib and osx-deployment targeted and updated mac install docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.7@7203 6adb6e0...

b7eded82b7f6f1da1f47e4d11a4090f92ac9d6ba authored about 14 years ago by Stephan Aiche <[email protected]>

** VS2010 is now fully supported!

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.7@7202 6adb6e0...

6a9a3112868ef0370d0b17190b0d33c250e431c0 authored about 14 years ago by Chris Bielow <[email protected]>

** installer docu update

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.7@7201 6adb6e0...

04482b39118ccc3f91217e911b688a532301482f authored about 14 years ago by Chris Bielow <[email protected]>

fixed several checker errors (mostly malformated test files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.7@7199 6adb6e0...

0c8b1046a73e3c3d9cee86c372c479ce9dd8efe5 authored about 14 years ago by Stephan Aiche <[email protected]>

fixed stupid bug (member variable not initialized)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.7@7198 6adb6e0...

5801f74871685859379a257998aa2c5f5aa385ef authored about 14 years ago by Hendrik Weisser <[email protected]>

followup from rev.7165 test change

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.7@7197 6adb6e0...

917c2d957bb44908792d3bd0535837141b8381e7 authored about 14 years ago by Mathias Walzer <[email protected]>

followup from rev.7165 test change

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.7@7196 6adb6e0...

80f76144d8ce0eb8f38ff69a799cd54548fdaae0 authored about 14 years ago by Mathias Walzer <[email protected]>

some updates

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.7@7195 6adb6e0...

89cf9fc07f89b68720316e6680cf08ad8ba96b16 authored about 14 years ago by Hendrik Weisser <[email protected]>

removed tests of deprecated algorithms

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.7@7194 6adb6e0...

8add43f116779df9272c1338e3a6d3c7a387d698 authored about 14 years ago by Hendrik Weisser <[email protected]>

added tests for 'setReference'

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.7@7193 6adb6e0...

aeb629f5687f572e58236fd5b3ac9f76820a9a78 authored about 14 years ago by Hendrik Weisser <[email protected]>

moved implementation of 'setReference' to .C file

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.7@7192 6adb6e0...

a356740433b32b07c9399e2b483bcf15d02ce7a7 authored about 14 years ago by Hendrik Weisser <[email protected]>

2D->1D scan: Changed default draw mode to IM_SNAP

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.7@7191 6adb6e0...

0a5e617563140409c236b633ae4342b90302f4a3 authored about 14 years ago by Timo Sachsenberg <[email protected]>

** more REGEX -> PATTERN replacement

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.7@7190 6adb6e0...

6ed996f9aeebb782cb0488b2b02683692e4e8b98 authored about 14 years ago by Chris Bielow <[email protected]>

** packaging reworked\n ** some clean up\n**fixed ticket #172

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.7@7189 6adb6e0...

a8f10f1d9c5bc5a926f6fd0591baae3125989eb1 authored about 14 years ago by Chris Bielow <[email protected]>

minor change of default display mode to IM_SNAP

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7188 6adb6e08-d915-0410-9...

a7e2681f139e1be5a4cdb8590428ddf3684008cb authored about 14 years ago by Timo Sachsenberg <[email protected]>

fixed linux 32bit problem in GaussTraceFitter_test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.7@7187 6adb6e0...

1e61fd1240e6fef50e59074d01f253899cf37c8c authored about 14 years ago by Stephan Aiche <[email protected]>

** MSSim fix

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.7@7186 6adb6e0...

67a4d242011ec0240ebe5f51f1d536703a965cd6 authored about 14 years ago by Chris Bielow <[email protected]>

** updated install instructions

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.7@7185 6adb6e0...

d88fc7b90a3cff579b51cb528123f0502fc7e99d authored about 14 years ago by Chris Bielow <[email protected]>

Release branch 1.7 created

A https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.7

git-svn-id: htt...

4a7aff91df0c28dacfa7fd523e344e2cac970798 authored about 14 years ago by Chris Bielow <[email protected]>

deprected feature finding algorithms 'simple' and 'simplest', updated tests and parameter files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7181 6adb6e08-d915-0410-9...

1402ec1ca2845b609bb706338200d3deb5e9bc8e authored about 14 years ago by Hendrik Weisser <[email protected]>

** fix #173 and #174

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7180 6adb6e08-d915-0410-9...

9ebb13b3b64f2ae971a92238440da70addfe5c47 authored about 14 years ago by Chris Bielow <[email protected]>

** minor fix (potential bug in upcoming CMake 3.x)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7179 6adb6e08-d915-0410-9...

5ee62d6f56f803d958e56f767ff23d6bebfaf03e authored about 14 years ago by Chris Bielow <[email protected]>

without majority (never worked)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7178 6adb6e08-d915-0410-9...

ae031b3c115db76b23cbc2e3d9bc7d96a71c847f authored about 14 years ago by Sven Nahnsen <[email protected]>

forgot this in rev. 7176

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7177 6adb6e08-d915-0410-9...

86bf0f70c00d22e54c8c90f828d0753a748e8364 authored about 14 years ago by Hendrik Weisser <[email protected]>

deprecated feature grouping algorithm 'identification', updated parameter files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7176 6adb6e08-d915-0410-9...

56f16603ceb459e9f9725776b6ee2e1d64eaeffa authored about 14 years ago by Hendrik Weisser <[email protected]>

fixed small bug (reference not cleared)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7175 6adb6e08-d915-0410-9...

1d43fe199965171b5d16809fac2ce2e63bb9000b authored about 14 years ago by Hendrik Weisser <[email protected]>

AverageLinkage_test adjusted for gcc-optimization introduced floating imprecision

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7174 6adb6e08-d915-0410-9...

e446633431eb84fbb178025ea22258bfaec148a2 authored about 14 years ago by Mathias Walzer <[email protected]>

** fixed WSDL test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7171 6adb6e08-d915-0410-9...

c682b456e55f90dcf5cdf6d9217d14566bf1021d authored about 14 years ago by Chris Bielow <[email protected]>

ConsensusID without merge algorithm (never worked)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7170 6adb6e08-d915-0410-9...

9748f0e318a88bf0e8be20e0e5dc881d12ccbadb authored about 14 years ago by Sven Nahnsen <[email protected]>

consensusID test 1 output

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7169 6adb6e08-d915-0410-9...

210a99362fb5e6cb0c3f5918b9add69aa293e33b authored about 14 years ago by Sven Nahnsen <[email protected]>

consensusID test 1 input

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7168 6adb6e08-d915-0410-9...

c8cdb27472b7e7589bf1c98978967af0a1063233 authored about 14 years ago by Sven Nahnsen <[email protected]>

fixed handling of reference parameters, updated/added tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7167 6adb6e08-d915-0410-9...

de1659411a21d020b47d300eb344a93f2f202edc authored about 14 years ago by Hendrik Weisser <[email protected]>

insert missing space in parameter description

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7166 6adb6e08-d915-0410-9...

03d6edc3d35beca03f727fffc03f0acba9e96987 authored about 14 years ago by Hendrik Weisser <[email protected]>

ConsensusID:no segFault

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7165 6adb6e08-d915-0410-9...

4ad8a18a8ece6cdcb3eae1f3faf93eeabb029076 authored about 14 years ago by Sven Nahnsen <[email protected]>

Correction of FeatureLinker TOPP test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7164 6adb6e08-d915-0410-9...

095da204aa44c23456bb0013b95a0ec1124a179a authored about 14 years ago by Steffen Sass <[email protected]>

small docu fix, moved 'registerOptionsAndFlag_' method to the top

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7163 6adb6e08-d915-0410-9...

2b71bead1b886d347364a2215e3de494383145e7 authored about 14 years ago by Hendrik Weisser <[email protected]>

adapted tests for getPrefix, getSuffix, hasPrefix, hasSuffix

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7162 6adb6e08-d915-0410-...

b11b1732a801442b1779948b8bf40868dd94050d authored about 14 years ago by Sandro Andreotti <[email protected]>

update ConsensusID

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7161 6adb6e08-d915-0410-9...

700aff82a43bc0e2d959be071fa04cc5f5a238ab authored about 14 years ago by Sven Nahnsen <[email protected]>

update ConsensusID

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7160 6adb6e08-d915-0410-9...

485582b535a80fb47325ccd3e17f5cb992d371b3 authored about 14 years ago by Sven Nahnsen <[email protected]>

Correction of ConsensusFeature_test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7159 6adb6e08-d915-0410-9...

e1fe656450e997a735d3fb63095eab2001256b34 authored about 14 years ago by Steffen Sass <[email protected]>

updated to current version

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7158 6adb6e08-d915-0410-9...

fa3c0102c82a825a696e7e38144086f8e6425e41 authored about 14 years ago by Hendrik Weisser <[email protected]>

** ITRAQLabeler fix

** some todo's

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7157 6adb6...

c18d76605cb1ad9f65ebd5ce304cb7f707907cd1 authored about 14 years ago by Chris Bielow <[email protected]>

** fixed InspectAdapter for Windows (still not very user-friendly, but usable)** fixed bug in ClassTest.C

** fixed Inspect test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7...

9278d724786f390286c7b7a986c1337a1bc53fc2 authored about 14 years ago by Chris Bielow <[email protected]>

** fixed InspectAdapter for Windows (still not very user-friendly, but usable)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7155 6adb6e08-d915-0410-9...

658e29798b9dae10f55f893de1a20e1298e9cb41 authored about 14 years ago by Chris Bielow <[email protected]>

+++ DOCU

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7154 6adb6e08-d915-0410-9...

8c12250cd372c9de629441f2233fc614e1e41257 authored about 14 years ago by Chris Bielow <[email protected]>

** AASequence modification fix

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7153 6adb6e08-d915-0410-9...

07b2e88e09ec528eb4b7e2160f8dc8f5991d643c authored about 14 years ago by Chris Bielow <[email protected]>

getPrefix fixed

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7152 6adb6e08-d915-0410-...

1ff8239828337c414daae05bc6fffeb2d193df62 authored about 14 years ago by Sandro Andreotti <[email protected]>

N-Terminal modifications parsing fixed

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7151 6adb6e08-d915-0410-...

d82bc3134ea58b701a5115133c0dc1680d3b0e02 authored about 14 years ago by Sandro Andreotti <[email protected]>

** more robust theoretical sequence generation in TOPPView

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7150 6adb6e08-d915-0410-9...

b6455d7ec5c6bd7432ce70fead008fa2e5673a03 authored about 14 years ago by Chris Bielow <[email protected]>

** fixed compile error of MassCalculator (Windows)

** fixed compile error of AASequence ('wrong' usage of Const iterator) (MacOSX)

git-svn-id: http...

290d72932ca624034adcc10cb59cb45d27aeaf86 authored about 14 years ago by Chris Bielow <[email protected]>

** patch for Ticket #169

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7148 6adb6e08-d915-0410-9...

0ecddca50234045997bd0de07a2272f09e97338a authored about 14 years ago by Chris Bielow <[email protected]>

** fixed bug in RawMSSignalSimulation, leading to features of intensity 0

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7147 6adb6e08-d915-0410-9...

5c862c9388e0ca126190e766d05496ff6776360f authored about 14 years ago by Chris Bielow <[email protected]>

set relative scale and same visible area after 2D->1D extraction

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7146 6adb6e08-d915-0410-9...

79f818ccd74cec56513c3b25efd2c00312f226c4 authored about 14 years ago by Timo Sachsenberg <[email protected]>

** bugfix ITRAQLabeler

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7145 6adb6e08-d915-0410-9...

2e3fa879611ad01c0c00c64b252e4ee32a0c2865 authored about 14 years ago by Chris Bielow <[email protected]>

** fixed checker warnings

** some more docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7144 6a...

ba91907e94a7497122f742005d19cdd374f250ec authored about 14 years ago by Chris Bielow <[email protected]>

cleaned up naming of residue types, added support for different types to MassCalculator

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7143 6adb6e08-d915-0410-9...

5c972b34780efb5e1525b2b02dea351433338ace authored about 14 years ago by Hendrik Weisser <[email protected]>

Different m/z calculation for LabeledPairFinder (position at monoisotopic peak)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7142 6adb6e08-d915-0410-9...

e812dbe1f33de369ba02efa21ccf52df6cd8387b authored about 14 years ago by Steffen Sass <[email protected]>

** iTRAQ labeling BETA

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7141 6adb6e08-d915-0410-9...

a3ec737d743170794ba1d35287752b6cf31f2b70 authored about 14 years ago by Chris Bielow <[email protected]>

Better gnuplot files for visualizing the estimation-process.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7140 6adb6e08-d915-0410-9...

c3e585c23a76d9c6742747b432093d701e039d34 authored about 14 years ago by David Wojnar <[email protected]>

** fixed TEST/O18Labeler_test.C

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7139 6adb6e08-d915-0410-9...

ee15adc75ace53566136ef5264a20ea11e1962d7 authored about 14 years ago by Chris Bielow <[email protected]>

** o18 bugfix (intensities)

** some refactoring

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7138 ...

f986c6976ec3c55be8e046b9c44b61aa39180180 authored about 14 years ago by Chris Bielow <[email protected]>

fixed problem with c-term modifications parsing in AASequence [(Label:18O(2)) made problems due to the inner brackets]

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7137 6adb6e08-d915-0410-9...

e494728166bfb47b339e9b07b65a68c2904c4261 authored about 14 years ago by Stephan Aiche <[email protected]>

fixed problem with generation of charged features in IonizationSimulation (we need to generate a new UniqueId for each feature)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7136 6adb6e08-d915-0410-9...

ac1b4223528432de9ee7e544b413716693384155 authored about 14 years ago by Stephan Aiche <[email protected]>

added option to align to a reference file

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7135 6adb6e08-d915-0410-9...

4f8d470d7ab4c0f143eeb2240c9c15581ff309e8 authored about 14 years ago by Hendrik Weisser <[email protected]>

** added (non-functional) iTRAQ labeler

** some small simulator fixes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/Op...

cfa75e53adf791d4bc7a49ea077a1c3a9d490880 authored about 14 years ago by Chris Bielow <[email protected]>

** silencing FF_simple

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7133 6adb6e08-d915-0410-9...

4baa3341dfdf59a8361cb16e71898cc26f932643 authored about 14 years ago by Chris Bielow <[email protected]>

added 1st draft of labeling framework

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7132 6adb6e08-d915-0410-9...

6632322c60f2f7dcab30c136e784d85b0130c62e authored about 14 years ago by Stephan Aiche <[email protected]>

** MS2 simulation speed up (sampled once per Feature, instead of once per MS^E)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7130 6adb6e08-d915-0410-9...

d25ceb8e6edc365c939af66a21bbfe13f92051a7 authored about 14 years ago by Chris Bielow <[email protected]>

** fixed compile error on GCC

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7129 6adb6e08-d915-0410-9...

62768fcaaf087c86a2cdef11ae4d5ab3723d9057 authored about 14 years ago by Chris Bielow <[email protected]>

** added MS^E to simulator

** fixed const issues in PrecursorIonSelection

git-svn-id: https://open-ms.svn.sourceforge.net/s...

c5c26c21c9f2ed5871b6b84fe467c042331a4a27 authored about 14 years ago by Chris Bielow <[email protected]>

** small fixes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7127 6adb6e08-d915-0410-9...

42fc204e6272635c07ab5a03c351c699afffb662 authored about 14 years ago by Chris Bielow <[email protected]>

** fixed bug in MascotRemoteQuery, thx to Pieter for reporting this

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7126 6adb6e08-d915-0410-9...

76e06919ddbc43196ef50de5e3395fccceeb57bc authored about 14 years ago by Chris Bielow <[email protected]>

** minor docu update

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7125 6adb6e08-d915-0410-9...

219021c933ec447d8c4f71c84ee0d4a6e9e4eb01 authored about 14 years ago by Chris Bielow <[email protected]>

** fixed test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7124 6adb6e08-d915-0410-9...

cd948aa338d143c6ef1beeff6a502f898622aa34 authored over 14 years ago by Chris Bielow <[email protected]>

** fixed a warning on windows

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7121 6adb6e08-d915-0410-9...

503a8b34a437b69b0bf23d3bde5f8c3d12af13de authored over 14 years ago by Chris Bielow <[email protected]>

** small fix

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7120 6adb6e08-d915-0410-9...

4a17b6420392e4ccde371726e4110871f984af2d authored over 14 years ago by Chris Bielow <[email protected]>

** libSVM update (silenced output), latest contrib required!

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7119 6adb6e08-d915-0410-9...

7d95f513295bfe01f00b97ed91e234dc6d9dc50d authored over 14 years ago by Chris Bielow <[email protected]>

** some more docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7117 6adb6e08-d915-0410-9...

98d380531660b3a6050f2ea54dd3d6cfe28fcebb authored over 14 years ago by Chris Bielow <[email protected]>

removed again some relicts of ptm simulation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7116 6adb6e08-d915-0410-9...

5a98b1741759c1414f44ba1a07347e3986963e20 authored over 14 years ago by Stephan Aiche <[email protected]>

** added digestion model for trypsin

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7115 6adb6e08-d915-0410-9...

f6332e052bb198a17f21e417193147d88baf41dc authored over 14 years ago by Chris Bielow <[email protected]>

updated some appearance stuff for mac package

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7114 6adb6e08-d915-0410-9...

9b2c9eb3094aa5b1aaa8a22522c46c4afa988c86 authored over 14 years ago by Stephan Aiche <[email protected]>

this should fix most of the issues with the installer on MacOS X

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7113 6adb6e08-d915-0410-9...

1c99637b60d84fb3aee5cc4008d5dde7770ae41b authored over 14 years ago by Stephan Aiche <[email protected]>

changed CTest drop_location to reflect changed CDash-situation in Tuebinger server-topography

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7111 6adb6e08-d915-0410-9...

3dc99b1b42f124112ba4a643470b44c8c726bffc authored over 14 years ago by Mathias Walzer <[email protected]>

removed another relict of PTMSimulation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7110 6adb6e08-d915-0410-9...

0e1b341b412d489f566d8499164f81cffd2b02d6 authored over 14 years ago by Stephan Aiche <[email protected]>

** small svm fix

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7109 6adb6e08-d915-0410-9...

4a733ed89cc8828aeca4d02d56c783984476984e authored over 14 years ago by Chris Bielow <[email protected]>

removed PTMSim test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7108 6adb6e08-d915-0410-9...

c9d3587203522bf17e7364c8919c626b1d3cd4b4 authored over 14 years ago by Stephan Aiche <[email protected]>

** fixed PTModel.C

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7107 6adb6e08-d915-0410-9...

52289db498837882ffe84ea7e5c5811a01422d27 authored over 14 years ago by Chris Bielow <[email protected]>

** fix

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7104 6adb6e08-d915-0410-9...

dbf9e3ed1789f8d7b3fab161fe7c9b72d51b6a6c authored over 14 years ago by Chris Bielow <[email protected]>

** SVMWrapper revised, including progress

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7103 6adb6e08-d915-0410-9...

ec71cf3839f489387fec49bc4d803d9ceeeaaad2 authored over 14 years ago by Chris Bielow <[email protected]>

removed PTMSimulation from simulator, we add a separate tool for this soon; added FF centroided helper structs defaults instances to sources.cmake (missed that in the last commit)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7102 6adb6e08-d915-0410-9...

6b1be920a6baa78aef5c96bdf5a88937d760e0f0 authored over 14 years ago by Stephan Aiche <[email protected]>

just added default instance of centroided FF helper structs

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7101 6adb6e08-d915-0410-9...

f15fbd1e7428907e4287a42364b0be66744e1849 authored over 14 years ago by Stephan Aiche <[email protected]>

** updated windows install docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7100 6adb6e08-d915-0410-9...

8c02f2b56d3fa9cce4b0653aaa8dc6a702681280 authored over 14 years ago by Chris Bielow <[email protected]>

** SVMWrapper, cleanup, part 1

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7099 6adb6e08-d915-0410-9...

08b437439c5b6879553963197e7b7db156970f9f authored over 14 years ago by Chris Bielow <[email protected]>

another try... ticket #162

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7098 6adb6e08-d915-0410...

7f8633e65ebe9c27c366723796c031d5ef9f3280 authored over 14 years ago by Johannes Veit <[email protected]>

fixed #162 again

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7094 6adb6e08-d915-0410...

bb7b8f064bd67d5f798fa545788a390db86558c3 authored over 14 years ago by Johannes Veit <[email protected]>

renamed 'include_fewer' flag to 'include_all'

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7092 6adb6e08-d915-0410-9...

1f04654b4a78c6978a3959df3352e099f602d257 authored over 14 years ago by Hendrik Weisser <[email protected]>

fixed possible problem for nightly external code tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7089 6adb6e08-d915-0410-9...

25f64e363e36e56a48350ce15361bdf9f32b1873 authored over 14 years ago by Stephan Aiche <[email protected]>

fixed bug [141] -> linker errors with CMake 2.8.1

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7086 6adb6e08-d915-0410-9...

c7734102b62e0f95d67998820f178c5da66f72ff authored over 14 years ago by Stephan Aiche <[email protected]>