Ecosyste.ms: OpenCollective
An open API service for software projects hosted on Open Collective.
github.com/OpenMS/OpenMS
The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS
b3b923f190c6892f6e45b3b5ad56cf01ae048d59 authored about 2 years ago by kyowonjeong <[email protected]>
01daa7d36b1d40fab1c860570070510667757ecc authored about 2 years ago by Timo Sachsenberg <[email protected]>
3c67d4d141608672f05872f24295fb1f534018a7 authored about 2 years ago by Timo Sachsenberg <[email protected]>
d1e54885afee35f307850d5dab764ea437da874d authored about 2 years ago by Timo Sachsenberg <[email protected]>
5f0bbaf55ebb88a751b047ffc547800fc700c7d3 authored about 2 years ago by kyowonjeong <[email protected]>
48152adb7e037b2888b46743fa90cc2d834d6099 authored about 2 years ago by JeeH-K <[email protected]>
a5738bbb5b05546a0f29972c42e95b7b6db7796b authored about 2 years ago by kyowonjeong <[email protected]>
Switch from nose to pytest
1506bb36aede11e68a038e541b658f61d8cd8c07 authored about 2 years ago by Timo Sachsenberg <[email protected]>add tests;
fix small bugs
fd9fb35a99798ee2b00712783933139a68a5dc3e authored about 2 years ago by kyowonjeong <[email protected]>
d47a9832d2e1138d03392c5b1f5d4b0eb7008199 authored about 2 years ago by JeeH-K <[email protected]>
2a6fcf7a7906c97d93362e3b18bcdd9329d34cf3 authored about 2 years ago by Timo Sachsenberg <[email protected]>
6cc781903f4bff99116e10ff337e9e01212adad6 authored about 2 years ago by Julianus Pfeuffer <[email protected]>
2080bbe5828c5899ef86088b007e4fb7e5c8886d authored about 2 years ago by JeeH-K <[email protected]>
eb886bacf7edb55851339016bbac0b31b6dd98d2 authored about 2 years ago by JeeH-K <[email protected]>
# Conflicts:
# doc/doxygen/public/TOPP.doxygen
# src/openms/include/OpenMS/ANALYSIS/TOPDOWN/FLAS...
8a1a30e42134e1ed039139e81db0d456de7206c8 authored about 2 years ago by JeeH-K <[email protected]>
61d85286af520e792b007d1450f54f1a29f598ef authored about 2 years ago by Julianus Pfeuffer <[email protected]>
dfe38c6a6125a2aea0be754ece5568add6748e00 authored about 2 years ago by Julianus Pfeuffer <[email protected]>
fc632b90058d9976b0dee2e15237d478f4a66ca0 authored about 2 years ago by bielow <[email protected]>
3b2c12d905cac4521f7bf762a348ae47baf6f2a1 authored about 2 years ago by JeeH-K <[email protected]>
d5b5365de8eb9b754a271eb04edcc7dfd87f5e45 authored about 2 years ago by bielow <[email protected]>
5441ac80a7dda65167e64945816474bc4c173d81 authored about 2 years ago by Timo Sachsenberg <[email protected]>
[Feature] Index column for GNPS meta value file
c93665ba0f9cfe42c1e33dbcdf3ff914ae16ac6d authored about 2 years ago by Timo Sachsenberg <[email protected]>cedf36f0d30f66a95762be64a62456308c4df4b3 authored about 2 years ago by bielow <[email protected]>
9aeaa89e93da11b10bc36cb04affc4a3cbe0bc51 authored about 2 years ago by bielow <[email protected]>
Change CorrectMZ function to be similar to correctIM() such that in
PASEF data, precursors are e...
e4980a0fcd2f5dee09408395094fb49cc320ed1f authored about 2 years ago by bielow <[email protected]>
72b68966855e26d0f1ef1cdbfe2b2ad8776565e1 authored about 2 years ago by Joshua <[email protected]>
5f63055c84ccba7bacd5b4fa3246723fc8dec8ba authored about 2 years ago by Timo Sachsenberg <[email protected]>
815d71fc4564bde675eb4c62ea92d4ac63cb2b30 authored about 2 years ago by axelwalter <[email protected]>
1fc0d7407578a1b9624df5b749ed25a6bd0412c8 authored about 2 years ago by axelwalter <[email protected]>
163eaed41e2fa2c0a538949e3b6d2fc0ddc37598 authored about 2 years ago by axelwalter <[email protected]>
Previously I added a function to ensure OpenSwathDecoy generator does
not add decoys that are al...
add to test to ensure decoys of different charge states and same
sequence are not excluded.
Append to OpenSwathWorkflow_23 test to also test that pasef windows can be
correctly assigned in...
5a66d1356c20a00d0127f721fe366bf73d3779f2 authored about 2 years ago by Joshua <[email protected]>
2b367eb0c93130fd32fc82dba61d802e9fc33c3c authored about 2 years ago by axelwalter <[email protected]>
5bd65a4cc36f30af22a6b2719cdd6d4a0705c5aa authored about 2 years ago by axelwalter <[email protected]>
54be3454b6c382f52ae300bfdf8df8c716db7487 authored about 2 years ago by Joshua <[email protected]>
replace output files for tests which now include the new delta_im
parameters
add output of delta im (both MS1 and MS2 level) and add IM for both MS1
and MS2
2bd0dc66f2f28304359ea3cceb06bfacb93d2e74 authored about 2 years ago by Joshua <[email protected]>
Previously IM calibration not working with PASEF data, code thought it
was sonar data. Added fun...
Allow iRT peptides to be picked from the SWATH which they are most
centered around with their io...
Fix/MSFragger_PEPModel_Support
031a36f3790a8a2fcd9818a2f9414e58bfe720c9 authored about 2 years ago by Julianus Pfeuffer <[email protected]>204bb9e25dadd83bd9b4b2ec0459180444390a24 authored about 2 years ago by tillenglert <[email protected]>
edb2006aacd33d6c1fff3d72a834812ddefc045f authored about 2 years ago by tillenglert <[email protected]>
ce1a004456f20ed359c944d633ec5a22d413ca88 authored about 2 years ago by Virginia Rossow <[email protected]>
08e532cb86d443db5153ec9ee7f8265dcc299eac authored about 2 years ago by kyowonjeong <[email protected]>
cfde822a6d3846346947ae19885c8390ffc8e35d authored about 2 years ago by kyowonjeong <[email protected]>
789ee0c23947708851950d2c279ec6fe167f6dbb authored about 2 years ago by bielow <[email protected]>
9683e4b1df0956d1ef089f8df7e2a1c4338851d6 authored about 2 years ago by bielow <[email protected]>
# Conflicts:
# contrib
# src/openms/include/OpenMS/KERNEL/DimMapper.h
# src/openms/include/OpenM...
re-remove myrimatch binary
2a9ca82b1f043bd930865ea0ee0bf010fb752f73 authored over 2 years ago by Samuel Wein <[email protected]>re-remove myrimatch
e44038a5f8d630e230b9ef35279cde25689d65c8 authored over 2 years ago by Samuel Wein <[email protected]>Crux related parts have been removed. Tested in M1 arm64 machine.
1744153f0ce0faf816ab7760a4c8d96384a932a8 authored over 2 years ago by Samuel Wein <[email protected]>309183a8ff0f3db9ca4fb17dcd54ec11abfc7334 authored over 2 years ago by Samuel Wein <[email protected]>
More preparations for TOPPView refactor
be9861f50ac9c3c68a399bbf83d8d5bc771a8128 authored over 2 years ago by Timo Sachsenberg <[email protected]>* add methods to extract peptide id meta values
* export consensus feature meta values of fir...
e1bd67c71643e974841847f2a3214e75e34cc9eb authored over 2 years ago by Timo Sachsenberg <[email protected]>6b5f08de100ecaf6116a04c7ab8e98972981460f authored over 2 years ago by kyowonjeong <[email protected]>
102cc66972faa2688c8b39b68cddffa7d3e1927c authored over 2 years ago by bielow <[email protected]>
5c45589c09c65c050f85f2b5d0c62b43107ffe49 authored over 2 years ago by bielow <[email protected]>
6947bc453343724effbe5b0642f6db2ee9ef1dd0 authored over 2 years ago by JeeH-K <[email protected]>
3d9b1cc6c70caaffa12d9bdbd77a2e9aa5326c94 authored over 2 years ago by Samuel Wein <[email protected]>
c02c2a67aa5c151a5d18159c1f8e686b2363dcc2 authored over 2 years ago by bielow <[email protected]>
601af94b149dc767a645af654102fa0a228da8ef authored over 2 years ago by bielow <[email protected]>
1332df94d996bf53d80264231bffcc025ef3a9dd authored over 2 years ago by bielow <[email protected]>
* several sirius fixes
* remove obsolete processor parameter
a98ddd68a410e11eefd077d95f01340538a0ba06 authored over 2 years ago by Julianus Pfeuffer <[email protected]>ec0f97110452df1c3c02fec3b3bc1ed9ba53e218 authored over 2 years ago by bielow <[email protected]>
* [feature] switched doxygen to use the "Doxygen Awesome" theme
* Change accent color to matc...
ea0316ed72842ff3918dfd393eda323879f7d554 authored over 2 years ago by Samuel Wein <[email protected]>2734c4a4656f123b63f13a2d06040934f2ee6556 authored over 2 years ago by kyowonjeong <[email protected]>
fb1ed96bb9b8a60ca4c7a3a99e91d55ffc24c8e9 authored over 2 years ago by bielow <[email protected]>
6f65869bbf0ba2d9358be2c573c810493d85f90a authored over 2 years ago by bielow <[email protected]>
10fcd81305a74004fefbd7635d2ed1ceada7167e authored over 2 years ago by bielow <[email protected]>
6427077f4222f54e4c6a958ab1cff4c06917f39a authored over 2 years ago by bielow <[email protected]>
c41eeadb18ad228e00e14b61962335862680c36c authored over 2 years ago by bielow <[email protected]>
6f8b258d6fd757499aabb589459ca73d2a2761ec authored over 2 years ago by bielow <[email protected]>
5f475956adee33e6e21d20e2baad13cd6534c692 authored over 2 years ago by bielow <[email protected]>
e2b27cd9b5df990d099763a8246c369b7474be28 authored over 2 years ago by bielow <[email protected]>
# Conflicts:
# src/openms/include/OpenMS/CHEMISTRY/EnzymaticDigestion.h
# src/openms/include/Ope...
91355b37619100f044b6572ee9b85fe8e9228172 authored over 2 years ago by bielow <[email protected]>
MzTab more switches to stream reader/writer
2903ede04322dc4ef94f871cc0c863bcf9f02f5a authored over 2 years ago by Timo Sachsenberg <[email protected]>fedbfdd879c4b2d45047d799448d0778864a997b authored over 2 years ago by bielow <[email protected]>
59f6110bdcf178933e07504a160ac9518f7bb8b0 authored over 2 years ago by Timo Sachsenberg <[email protected]>
ef8b46d36b29d65ae83ee8a0f9806d03a2c87b86 authored over 2 years ago by kyowonjeong <[email protected]>
8684dfa58e7e49911494c22b1d1bf7d6f348939e authored over 2 years ago by bielow <[email protected]>
# Conflicts:
# contrib
# src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h
# src/openms/inclu...
[Fix] GNPSMetaValueFile pyopenms test
4466c8473a7f3b15467710dbdae03442c0973050 authored over 2 years ago by axelwalter <[email protected]>7f478ab759b11f508413032e9d4bc54a8e599971 authored over 2 years ago by bielow <[email protected]>
62d0170ddeb7ef95ecb187230beb4ad180477e36 authored over 2 years ago by Timo Sachsenberg <[email protected]>
0cf965d8ec4320f8f2955490e19d874353709071 authored over 2 years ago by Timo Sachsenberg <[email protected]>
460c47ed49d5381533da5c9a492cdf656ef46608 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Added file descriptions with file names to the ConsensusMap. Required for the GNPS meta value file.
98edf66201168fbf0020f33b0b8495b50c2235c8 authored over 2 years ago by axelwalter <[email protected]>800ce3e7020178398a0a209f366bcfd254cbdbc5 authored over 2 years ago by axelwalter <[email protected]>
2ff2f30327867e9fe35b13b57e4b6f2c17d1caa0 authored over 2 years ago by Timo Sachsenberg <[email protected]>
pyopenms test - don't modify existing element (leads to side effects …
9c05ab5c4b451a423e43ca3aa54d9ad66a8c6a10 authored over 2 years ago by Timo Sachsenberg <[email protected]>3d5175a972010dfa12100896a2584c797abd162e authored over 2 years ago by Timo Sachsenberg <[email protected]>
b872104c47110c11681fa3cdfa2f6b58d966b287 authored over 2 years ago by Timo Sachsenberg <[email protected]>
00ba21fa83fb6794561369b85bf68e28f0ef1756 authored over 2 years ago by Timo Sachsenberg <[email protected]>