github.com/OpenMS/OpenMS commits | Ecosyste.ms: OpenCollective

some toppas/toppview fixes (EnhancedTabBar)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7712 6adb6e08-d915-0410-9...

7f75c23e18114a8a04a935b85d760563fbb42aa2 authored almost 14 years ago by Timo Sachsenberg <[email protected]>

** fixed some warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7711 6adb6e08-d915-0410-9...

97a5be8c00e8c91a49ed132d49cb99fa0d452420 authored almost 14 years ago by Chris Bielow <[email protected]>

added omsssa and mascot xml capability to IDFileConverter

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7710 6adb6e08-d915-0410-9...

253462ef3680e451926e37e7c2b03393dcfe7d7e authored almost 14 years ago by Mathias Walzer <[email protected]>

more toppas/toppview integration work... still much to do but open of toppas files seem to work

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7709 6adb6e08-d915-0410-9...

38f6ed2555757872abb65c8c0b7d8de2b292399e authored almost 14 years ago by Timo Sachsenberg <[email protected]>

initial steps for toppas/toppview integration

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7708 6adb6e08-d915-0410-9...

60b3915d713a2dd8c3bbe3af6731b7291ee13a97 authored almost 14 years ago by Timo Sachsenberg <[email protected]>

** fixed STL debug errors in FeatureLinker and CompNovo

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7707 6adb6e08-d915-0410-...

0cab478dc72991dfacb177d34f52bf21507d2ad3 authored almost 14 years ago by Chris Bielow <[email protected]>

** fixed a lot of tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7706 6adb6e08-d915-0410-9...

31d769a41dbd2590e6abdc532a1f6095cb7f1ee4 authored almost 14 years ago by Chris Bielow <[email protected]>

** added coverage computation to ProteinIdentification & TextExporter

** some docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7705 6adb6e0...

11be928d78068d7e49220f1fe187178517af2bd0 authored almost 14 years ago by Chris Bielow <[email protected]>

** some docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7703 6adb6e08-d915-0410-9...

47aa8eab76bb17db1e555f55742db7e3dc81e649 authored almost 14 years ago by Chris Bielow <[email protected]>

** removed useless swap (btw: it would have worked with "vector <x>().swap (myvec)"

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7702 6adb6e08-d915-0410-9...

078edc08bd2fb199abe90270f5be23b17f2ca506 authored almost 14 years ago by Chris Bielow <[email protected]>

** fixed ImageCreator test by switching to jpg

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7700 6adb6e08-d915-0410-9...

196f78918bcd27a39f1c47e244258a265cf7c288 authored almost 14 years ago by Chris Bielow <[email protected]>

fixed TextExporter test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7699 6adb6e08-d915-0410-9...

d0498b3c3092882a75866c7dee380fcab1bf8178 authored almost 14 years ago by Chris Bielow <[email protected]>

** allowing alignment and grouping of consensusMaps for algorithms that only support featuremaps

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7698 6adb6e08-d915-0410-9...

10f8e2843391f7c3a20ce7355e2a7fca8c75f7e5 authored almost 14 years ago by Chris Bielow <[email protected]>

** converting ConsensusMaps to FeatureMaps now OpenMS intrinsic

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7697 6adb6e08-d915-0410-9...

828b53a51e06b26821a6a2d2527cc14ca93a0658 authored almost 14 years ago by Chris Bielow <[email protected]>

** some coding convention for TextExporter

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7696 6adb6e08-d915-0410-9...

4cf97d56a1ad4ec71992df9e502afe5472662667 authored almost 14 years ago by Chris Bielow <[email protected]>

** another barrier for BSpline reliability checking

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7695 6adb6e08-d915-0410-9...

5d5ad02ba2c14efaf5d288cac0a73c65c74126a5 authored almost 14 years ago by Chris Bielow <[email protected]>

** fixed test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7694 6adb6e08-d915-0410-9...

1c3f8c4f538e49b29f125ee2076cbeb3df3b1a32 authored almost 14 years ago by Chris Bielow <[email protected]>

changed help-section and urls

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7693 6adb6e08-d915-0410-9...

8870ec77d576a7580f2734c273b407a1ea082972 authored almost 14 years ago by Mathias Walzer <[email protected]>

changed help-section and urls

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7692 6adb6e08-d915-0410-9...

ff660408d26ff78c99d5d28c02f9b2e4c79df3e4 authored almost 14 years ago by Mathias Walzer <[email protected]>

fixed bug #239

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7686 6adb6e08-d915-0410-9...

1d1ac80a14f56ce3122df089df2e205fd4515ab6 authored almost 14 years ago by Timo Sachsenberg <[email protected]>

** fixed compile error

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7685 6adb6e08-d915-0410-9...

693e743e8284f017468e855a24eb9295e6fd2780 authored almost 14 years ago by Chris Bielow <[email protected]>

Axis lines in axis widget

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7684 6adb6e08-d915-0410-9...

b5fd8fa058dc52bb716da5b7eff20982edd34be1 authored almost 14 years ago by Timo Sachsenberg <[email protected]>

** fixed iTRAQtest

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7683 6adb6e08-d915-0410-9...

21d4f15d098ecf3a904bf90c66a7812065cf7087 authored almost 14 years ago by Chris Bielow <[email protected]>

** some docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7682 6adb6e08-d915-0410-9...

d9839754d1fe0eab76b93f5172213ba395983fac authored almost 14 years ago by Chris Bielow <[email protected]>

** more warnings for BSpline issue

** rewrite to fit coding conventions

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/ope...

804815a00de7a96c268672f87bb20321003afc92 authored almost 14 years ago by Chris Bielow <[email protected]>

** disabled BSpline extrapolation (its very unstable) and replaced it with linear one

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7680 6adb6e08-d915-0410-9...

e3a1d29ada1818ca1f5ebd1c1ba1b2f5eb2ffd66 authored almost 14 years ago by Chris Bielow <[email protected]>

** itraqAnalyzer now also creates CF's for empty MS2 spectra (in case the ID worked one gets more points for alignment)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7679 6adb6e08-d915-0410-9...

a74812e4b2b81403508ada7067968eea29e45a29 authored almost 14 years ago by Chris Bielow <[email protected]>

** IDMapper stats for ConsensusMaps

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7678 6adb6e08-d915-0410-9...

c375aaa32bfc296799360b01aabeac97a3ea8317 authored almost 14 years ago by Chris Bielow <[email protected]>

greyed out identificaiton view when no annotations are loaded

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7677 6adb6e08-d915-0410-9...

d30bc41480ca06e4c4081f31ecbe2f1f08b105a6 authored almost 14 years ago by Timo Sachsenberg <[email protected]>

fixed identification view bug caused by fuzzy mapping in IDMapper

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7676 6adb6e08-d915-0410-9...

b35778209637e2cd1a7e869f9ae59928368a746c authored almost 14 years ago by Timo Sachsenberg <[email protected]>

** fixed TOPPAS bug #236 (partially)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7675 6adb6e08-d915-0410-9...

69082dd0699f32636f84ac4520a126562c2d702d authored almost 14 years ago by Chris Bielow <[email protected]>

** fixed #235 (again) with partial reverse of [7666]

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7674 6adb6e08-d915-0410-9...

8043865db381b949d20b2a008ba124fc152f0b00 authored almost 14 years ago by Chris Bielow <[email protected]>

minor fixes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7673 6adb6e08-d915-0410-9...

138955cfa58f0d4fd97cab357717bedb23de6315 authored almost 14 years ago by Timo Sachsenberg <[email protected]>

fixed bug with open 2D spectrum and identification view

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7672 6adb6e08-d915-0410-9...

f5e9f7e75f95abe8833fb642422be5b26880b22a authored almost 14 years ago by Timo Sachsenberg <[email protected]>

** cleaned up ITRAQAnalyzer

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7671 6adb6e08-d915-0410-9...

bf02bffc5b668f0375c5e43ba0545cecd46d57ac authored almost 14 years ago by Chris Bielow <[email protected]>

fixed some connections in identification view

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7670 6adb6e08-d915-0410-9...

3aacc3b4fe887802adbf6c0cbda84b07a6f02b23 authored almost 14 years ago by Timo Sachsenberg <[email protected]>

movable columns in identification view

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7669 6adb6e08-d915-0410-9...

fdd540ade88574cc3432269a26969783a21654c5 authored almost 14 years ago by Timo Sachsenberg <[email protected]>

** minor docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7668 6adb6e08-d915-0410-9...

5d7aa84cb54889dacd128f11706a439e431773dc authored almost 14 years ago by Chris Bielow <[email protected]>

fixed some missing signals

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7667 6adb6e08-d915-0410-9...

2e8a46757131911f8c81da73dc90adfddd6aa71b authored almost 14 years ago by Timo Sachsenberg <[email protected]>

** fixed #235

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7666 6adb6e08-d915-0410-9...

88d984d5d2b47af77d8e89b5b1b747f285f96843 authored almost 14 years ago by Chris Bielow <[email protected]>

** updated (install) docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7665 6adb6e08-d915-0410-9...

dfb1bb718f82f346ac52d7e0ad1caa725bccef8a authored almost 14 years ago by Chris Bielow <[email protected]>

** fixed File::getSystemParameters() (wrong ini update direction)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7664 6adb6e08-d915-0410-9...

f938981ea7d9fc7fdf7564fe17fde91dfb74a343 authored almost 14 years ago by Chris Bielow <[email protected]>

** fixed doc's

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7663 6adb6e08-d915-0410-9...

ea687a1bb6a660489236dbd8b4a31cf5330fc647 authored almost 14 years ago by Chris Bielow <[email protected]>

fixed reset zoom bug in identificatiion behavior

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7662 6adb6e08-d915-0410-9...

72b3a88a4e5c0b3aeda15f5efead6ac6c62ef398 authored almost 14 years ago by Timo Sachsenberg <[email protected]>

removed MS1 from identification view (now accessbile by clicking on precursor)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7661 6adb6e08-d915-0410-9...

4299dbfd9f78f730a81821e92926c59cac43ad78 authored almost 14 years ago by Timo Sachsenberg <[email protected]>

fixed AnnotationItem* ownership issue in IdentificationView and small openfiledialog file filter issue

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7660 6adb6e08-d915-0410-9...

dd18cb76f28ddb288f5db6cd9904992980864549 authored almost 14 years ago by Timo Sachsenberg <[email protected]>

proper removel of precursor annotations in IdentificationView (don't remove user annotations)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7659 6adb6e08-d915-0410-9...

a314695e0b70d4896d77d492e11a71b07192dbd7 authored almost 14 years ago by Timo Sachsenberg <[email protected]>

** updated minimum required QT version in install docs

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7658 6adb6e08-d915-0410-9...

1bf5d75badc978447b21fa71091ff4a4e85654c0 authored almost 14 years ago by Chris Bielow <[email protected]>

fixed topview center-on-startup bug on win64

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7657 6adb6e08-d915-0410-9...

54f45744d7ee8ed1d108d1a24cb1b43679a5f8a6 authored almost 14 years ago by Timo Sachsenberg <[email protected]>

** fixed mass trace glitch

** CE simulation now has RT width increasing with RT

git-svn-id: https://open-ms.svn.sourceforge...

7de18603a7cadd4ddf43c71c7fdff2156977e75f authored almost 14 years ago by Chris Bielow <[email protected]>

** mass traces for simulated features

** minor code restructuring

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/bran...

eac7bd0b998e3eddcd3d0b058e2147220fce49e8 authored almost 14 years ago by Chris Bielow <[email protected]>

refactored default spectra view into own behavior class and introduced behavior interface

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7651 6adb6e08-d915-0410-9...

c02635ad0153668609d0267b0d1a64ac25aeee85 authored almost 14 years ago by Timo Sachsenberg <[email protected]>

** fixed bug #231

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7650 6adb6e08-d915-0410-9...

48ab7d2a67e0fd275f41485a5936cf9aececc59d authored almost 14 years ago by Chris Bielow <[email protected]>

Visualisation of precursor spectrum rt position

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7648 6adb6e08-d915-0410-9...

bfb862ee33eda15fddea07115e9a58a4300d3d35 authored almost 14 years ago by Timo Sachsenberg <[email protected]>

fixed context menu segmentation fault on win64 if only one spectrum is present

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7647 6adb6e08-d915-0410-9...

f4971c2487e98186587724e1413003af5d0718ff authored almost 14 years ago by Timo Sachsenberg <[email protected]>

Fixed MultiGradientSelector bug on Win64

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7646 6adb6e08-d915-0410-9...

cc02239635bff4832cdc53c781a8a361f223ba43 authored almost 14 years ago by Timo Sachsenberg <[email protected]>

fixed FileFilter_8 test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7645 6adb6e08-d915-0410-9...

1a7b4761c7b0db7f66b9ab9ee77f0b62d96caa9e authored almost 14 years ago by Chris Bielow <[email protected]>

** updated current developers list

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7644 6adb6e08-d915-0410-9...

074f6662f5d3902c15565624ef72005c35f9e6df authored almost 14 years ago by Chris Bielow <[email protected]>

** added OpenMS ini with global FASTA DB capabilities

** minor clean-up

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7643 6a...

80184b3a2c106b2c7b565517ab286ae1c7f92a64 authored almost 14 years ago by Chris Bielow <[email protected]>

** fixed a lot of docu issues

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7642 6adb6e08-d915-0410-9...

9d5f277d5bdb4f3b40e9f64c8b31f38f9b16e9cd authored almost 14 years ago by Chris Bielow <[email protected]>

fixed compilation issue

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7641 6adb6e08-d915-0410-9...

6db39682f306f7274041489d17ab05c4293be7ae authored almost 14 years ago by Timo Sachsenberg <[email protected]>

fixed some identification view issues. added behavior as abstraction layer

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7640 6adb6e08-d915-0410-9...

9ae5b703101702b38cac11149f3dd35756677818 authored almost 14 years ago by Timo Sachsenberg <[email protected]>

visualization of isolation window in identification view

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7638 6adb6e08-d915-0410-9...

4d03d3994169d3e8922c712a6c4e3f40ccd6c1ec authored almost 14 years ago by Timo Sachsenberg <[email protected]>

csv export in identification view

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7637 6adb6e08-d915-0410-9...

3076ea9cbf8b2df397f964ca9f2f6f88e1a44105 authored almost 14 years ago by Timo Sachsenberg <[email protected]>

fixed some smaller bugs and naming issues

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7636 6adb6e08-d915-0410-9...

a92748dedfd966548a6dbca41210ea2878e50ad3 authored almost 14 years ago by Timo Sachsenberg <[email protected]>

** Digestor speed improvement

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Sim2@7635 6adb6e08-d91...

754653b1fd1a49955b7633828267c0779c825b20 authored almost 14 years ago by Chris Bielow <[email protected]>

fixed scaling problem for RawSignals and pepXML mod masses

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Sim2@7634 6adb6e08-d915...

3da18d934af207f5feedf67bb51acaa49851d08e authored almost 14 years ago by Stephan Aiche <[email protected]>

introduced movable peak annotations (preparation for automatic layout)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7633 6adb6e08-d915-0410-9...

dedc91d5f5756d953fb0a559184078a5e8bf4fbe authored almost 14 years ago by Timo Sachsenberg <[email protected]>

use E-vale as score for XTandem/Mascot results

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7632 6adb6e08-d915-0410-9...

9f6ce928f9542b60f382591b7ebdb42a0c513815 authored almost 14 years ago by Hendrik Weisser <[email protected]>

accept endings '.pep.xml'/'.prot.xml' for pepXML/protXML

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7631 6adb6e08-d915-0410-9...

6b6fa0f2c405304e6b8be3dd01d4665565820f1e authored almost 14 years ago by Hendrik Weisser <[email protected]>

** added FASTA output to Digestor

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Sim2@7630 6adb6e08-d915...

5439b2f95e8e96d55c42170a868af46055e744be authored almost 14 years ago by Chris Bielow <[email protected]>

added parameters for automatic alignment

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7629 6adb6e08-d915-0410-9...

03fb5430203e9eb4aa5958ebccb59cccdf2721f8 authored almost 14 years ago by Timo Sachsenberg <[email protected]>

fixed MacOS Operator error

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Sim2@7628 6adb6e08-d915...

edbd7b6754ac0a6b2c5d25a298b2144582ca7253 authored almost 14 years ago by Stephan Aiche <[email protected]>

header context menu in identification view

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7627 6adb6e08-d915-0410-9...

bca3a6bc790416856aedad8727ca06ab5ad9e7ab authored almost 14 years ago by Timo Sachsenberg <[email protected]>

visualisation of metavalues in extra columns

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7626 6adb6e08-d915-0410-9...

22d08f5987edb86653e1118386fff73276ccd58f authored almost 14 years ago by Timo Sachsenberg <[email protected]>

script to convert between old/new featureXML versions

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7625 6adb6e08-d915-0410-9...

df1957cdd985d4a78d255049fd4edbc6e155ad16 authored almost 14 years ago by Hendrik Weisser <[email protected]>

proper reset of aligned spectra in identification view

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7624 6adb6e08-d915-0410-9...

cbf8ee9c25cb779fdb3539e0c8020903a4a5c759 authored almost 14 years ago by Timo Sachsenberg <[email protected]>

** fixed CE simulation

** made "naive" digestion the default

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/op...

4d79509377fa08fa772583540f63d480bf9df454 authored almost 14 years ago by Chris Bielow <[email protected]>

Peak annotation with mz

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7622 6adb6e08-d915-0410-9...

e8671804143b135ae0793794a1b8c1d11ef3c86b authored almost 14 years ago by Timo Sachsenberg <[email protected]>

removed some code duplication

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7621 6adb6e08-d915-0410-9...

25d037f103a8d0b9ac8d76933946edb1bbb2cfa7 authored almost 14 years ago by Timo Sachsenberg <[email protected]>

automatic highlighting of aligned peaks in identification view

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7620 6adb6e08-d915-0410-9...

f112d0512909f1d5d1c3f0b308a53a45c6eef865 authored almost 14 years ago by Timo Sachsenberg <[email protected]>

** added peptideID's to labeled ConsensusMap

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Sim2@7619 6adb6e08-d915...

471c4be0c49e1733ea4a186248f4006b3c92dd91 authored almost 14 years ago by Chris Bielow <[email protected]>

fixed small bug in tick code

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7618 6adb6e08-d915-0410-9...

9de3968440adb44b5b607d4fefb8be6fdfb1ae6d authored almost 14 years ago by Timo Sachsenberg <[email protected]>

simplified and improved tick calculation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7617 6adb6e08-d915-0410-9...

dfc0240ef1c60fc6e00c0fd8acac910346ddcdd7 authored almost 14 years ago by Timo Sachsenberg <[email protected]>

** added RT & RT_index to pepXML

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Sim2@7616 6adb6e08-d915...

c48bac2883b4691625a1ffd47e45fc4b4a180f1f authored almost 14 years ago by Chris Bielow <[email protected]>

fixed missing RT in pepxml store

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Sim2@7615 6adb6e08-d915...

8b3c0f7f5656c6f6bb7930cbbe0111f8bd274685 authored almost 14 years ago by Stephan Aiche <[email protected]>

some SpectraIdentification improvements; Min qt versin 4.5

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7614 6adb6e08-d915-0410-9...

5ce990c6db9ad41d25c3d1ac6d0e91c3f7d451df authored almost 14 years ago by Timo Sachsenberg <[email protected]>

added new UTIL 'TrafoInverter'

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7613 6adb6e08-d915-0410-9...

180fe8cbac75033c7a4406361a1ec5547da56dc3 authored almost 14 years ago by Hendrik Weisser <[email protected]>

adapted to recent TOPPBase/ToolHandler changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7612 6adb6e08-d915-0410-9...

1e087cd70a4ffe08248f73dd6272ccbb565f33b2 authored almost 14 years ago by Hendrik Weisser <[email protected]>

** added meta_data filtering to FileFilter

** added MS^E debug option (export original MS2 spectra)

git-svn-id: https://open-ms.svn.sourcef...

ddae5024a57f911d4b0ae3a21325b2313712de1b authored almost 14 years ago by Chris Bielow <[email protected]>

correct computation of mass in PepXML aa-mod tags

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Sim2@7610 6adb6e08-d915...

ec560fb9933e0df706a757f074421bcbc5dbea7f authored almost 14 years ago by Stephan Aiche <[email protected]>

SVG support in 1D View

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7609 6adb6e08-d915-0410-9...

f3a5446be8efa47e8f2bdc652490e2dae8b81643 authored almost 14 years ago by Timo Sachsenberg <[email protected]>

fixed bug leading to empty spectra

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Sim2@7607 6adb6e08-d91...

316fef0ae66c99203e682801b1d89568a4193908 authored almost 14 years ago by Sandro Andreotti <[email protected]>

implemented constant (user defined) rt shift for SILAC pairs

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Sim2@7606 6adb6e08-d915...

f3076e3ccb86e11a014b71bbf4aad680319c99b6 authored almost 14 years ago by Stephan Aiche <[email protected]>

** small fix

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Sim2@7605 6adb6e08-d915...

23351ad7ebfb5cda9468e2beca0587be4e46a830 authored almost 14 years ago by Chris Bielow <[email protected]>

tandem MS Simulator

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Sim2@7603 6adb6e08-d91...

08e1fe037cf74a636ff6f3b44239dd7e1c9a731c authored almost 14 years ago by Sandro Andreotti <[email protected]>

some preparations for SVG support

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7601 6adb6e08-d915-0410-9...

51a7abfe20baa6a563a8feda3839c67c437eab74 authored almost 14 years ago by Timo Sachsenberg <[email protected]>

** set default intensity to 10000 instead of 100 for more stable abundance

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Sim2@7600 6adb6e08-d915...

0af8dfadac16485ce9ee4adc98363b37bacef991 authored almost 14 years ago by Chris Bielow <[email protected]>

* merged SILAC simulation specific updates from head to Sim branch (merge -r 7364:HEAD on include and source)

* merged fix for PepXML bugs into Sim branch [7597]
* merged ModificationsDB changes (required ...

dc40af9ee06ea3f5700de6e20ea05653f037f2b3 authored almost 14 years ago by Stephan Aiche <[email protected]>

fixed PepXMLFile bugs #225 and #224

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@7597 6adb6e08-d915-0410-9...

672cdbc513db39db4606f578a5aaeeaf5af4c3fa authored almost 14 years ago by Stephan Aiche <[email protected]>