github.com/OpenMS/OpenMS commits | Ecosyste.ms: OpenCollective

** ALL PIPELINES CREATED SINCE [8490] ARE INVALID!!

** TOPPAS now used parameter names instead of indices to store edge connections - much more robus...

03a425cb4c95ea2d165f35b0482a4421b6bd0833 authored about 13 years ago by Chris Bielow <[email protected]>

excluded TICs from range calculation in MSExperiment as mz is not clearly defined

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8491 6adb6e08-d915-0410-9...

a5cd67172feb2d8ba3b2d049b674c1845a8ea549 authored about 13 years ago by Timo Sachsenberg <[email protected]>

** fixed #320 (basic text functionality supported)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8490 6adb6e08-d915-0410-9...

7cd37360e0c74f2b3a1f170909b5f747dcab9968 authored about 13 years ago by Chris Bielow <[email protected]>

checker appeasement for FuzzyStringComparator

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8486 6adb6e08-d915-0410-9...

3aef04445468e51cac90fcee3db20391a8b307ae authored over 13 years ago by Stephan Aiche <[email protected]>

* fixed #318

* massive refactoring of FuzzyStringComparator to remove code duplication and lots of other prob...

d0d5f7fe65ed775b62261d090f441930cabf2519 authored over 13 years ago by Stephan Aiche <[email protected]>

added missing note to input file description: (centroided data)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8483 6adb6e08-d915-0410-9...

985a0dbd8255158d917bb4b830e33abb261b46eb authored over 13 years ago by Timo Sachsenberg <[email protected]>

** minor fixes for TOPPAS web download

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8477 6adb6e08-d915-0410-9...

3c6da66ca764e539949c3fe1cfde90bfd04b4d2a authored over 13 years ago by Chris Bielow <[email protected]>

** TOPPAS now supports download of online TOPPAS files we put on our homepage

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8474 6adb6e08-d915-0410-9...

4d151a56823ecccf585e67dcc0764a7ee3d617f4 authored over 13 years ago by Chris Bielow <[email protected]>

fixed some more cppcheck issues (mostly prefix operators for iterators)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8467 6adb6e08-d915-0410-9...

bd0a431c176276c8b1f8469830c821da7d8df884 authored over 13 years ago by Stephan Aiche <[email protected]>

code cleaning

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8465 6adb6e08-d915-0410-9...

3105a71a17061d5d54a540de13ceb6b4bded1fe9 authored over 13 years ago by Sven Nahnsen <[email protected]>

* fix for Ticket #317, changed implementation of ostream::operator<< of MSSpectrum, it now iterates over the vector instead of calling its nonexistent ostream::operator<<

* test for ostream::operator<< was also implemented

git-svn-id: https://open-ms.svn.sourceforge...

0348ca27df6b9b9c9f0b1d4d48df7835d3dda63d authored over 13 years ago by Stephan Aiche <[email protected]>

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8457 6adb6e08-d915-0410-941f-83917bcadc18

6015fc0d2f025bad3bf9ab8d81caeb2301dd0c04 authored over 13 years ago by Chris Bielow <[email protected]>

** removed PP from HighResPrecursorMassCorrector.C

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8456 6adb6e08-d915-0410-9...

0ef1d776e0b291a4daec036cf603fe694477500a authored over 13 years ago by Chris Bielow <[email protected]>

** converted InclusionExclusionList to DefaultParamHandler controlled class

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8450 6adb6e08-d915-0410-9...

4649976be11185e123e5b00bc1f81c9e6eda797a authored over 13 years ago by Chris Bielow <[email protected]>

fix for #314 "Crash when selecting empty window"

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8448 6adb6e08-d915-0410-9...

ec86ff65779a460393dba278c420b67aaa5f978e authored over 13 years ago by Stephan Aiche <[email protected]>

** minor

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8447 6adb6e08-d915-0410-9...

9d318c6e6b06d149d9fdc3b12be32ec1b3a88e59 authored over 13 years ago by Chris Bielow <[email protected]>

maybe this fixes the randomly failing LogStream_test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8446 6adb6e08-d915-0410-9...

94c375301e1495802bee7a7ca2eac0d73a8ba2f8 authored over 13 years ago by Stephan Aiche <[email protected]>

** ppm fix 2

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8445 6adb6e08-d915-0410-9...

44e57f9ea0d4f6bcfe29018a2ae3f6ed2dbc8144 authored over 13 years ago by Chris Bielow <[email protected]>

** bug in SPECTRA/SpectrumAlignmentScore.C (1e7 instead of 1e6 as ppm)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8443 6adb6e08-d915-0410-9...

5fdea0eb37a39ce2af05d7178435b44684d813fa authored over 13 years ago by Chris Bielow <[email protected]>

** fixed ppm bug in EICExtractor

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8441 6adb6e08-d915-0410-9...

4fc1927b7143044d4f4eb26f7521abab8b7ecea2 authored over 13 years ago by Chris Bielow <[email protected]>

added small note

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8440 6adb6e08-d915-0410-9...

499c59062b29357a8a4b5c7fc4fd74f7b074b387 authored over 13 years ago by Timo Sachsenberg <[email protected]>

** fixed IonizationSimulation (numeric instability issue)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8434 6adb6e08-d915-0410-9...

45b69ab29aabbed4c2dc97f6a1ef7399e8dd552e authored over 13 years ago by Chris Bielow <[email protected]>

** fix

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8433 6adb6e08-d915-0410-9...

58992342a0f488cd586bd6d9523e9b7bb9a0f0a9 authored over 13 years ago by Chris Bielow <[email protected]>

** more debug for ion sim

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8432 6adb6e08-d915-0410-9...

caf2be890ae87cd526ba0edf1c33e0c91107d7bb authored over 13 years ago by Chris Bielow <[email protected]>

** EICExtractor can now merge multiple input files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8431 6adb6e08-d915-0410-9...

9381d7aaf209926ad65a6579d31455cb79eada1b authored over 13 years ago by Chris Bielow <[email protected]>

** fixed bug in EDTA file

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8430 6adb6e08-d915-0410-9...

3a41c2c5f696ac05486110eeb78c380b9fe0be32 authored over 13 years ago by Chris Bielow <[email protected]>

** fixed tests

** some more docu for EDTAFile

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/O...

6c14032a9d94a0fff1c694b726813ddfc91ef297 authored over 13 years ago by Chris Bielow <[email protected]>

** new TOPP tool EICExtractor (cheap targeted quant, usually for metabolites)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8428 6adb6e08-d915-0410-9...

f3c80c1db1b522c2487246ef00e5aca3962a440f authored over 13 years ago by Chris Bielow <[email protected]>

** better EDTA file parsing

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8427 6adb6e08-d915-0410-9...

ea403510ed045790cc74920ba5086b1b0d3c674d authored over 13 years ago by Chris Bielow <[email protected]>

** fixed example BSA_Quantitation.toppas

** fixed missing processing info in NoiseFilter.C

git-svn-id: https://open-ms.svn.sourceforge.ne...

e64b189ce0efab6d8466e02f063acfbdba60221a authored over 13 years ago by Chris Bielow <[email protected]>

XTandem can now be set to detect semi cleavage

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8425 6adb6e08-d915-0410-9...

fc84872c3cf810fc06d77984ceb05dda4bc59471 authored over 13 years ago by Sven Nahnsen <[email protected]>

added note about special OMSSA behavior

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8424 6adb6e08-d915-0410-9...

c2c211434880a62b1b1a683a06c8978c01819ab7 authored over 13 years ago by Timo Sachsenberg <[email protected]>

** timeout for MascotAdapterOnline to at least quit when connection is unstable (otherwise it idles forever, never returning)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8423 6adb6e08-d915-0410-9...

596796eedfc9c660068fbd3062439be3782809a0 authored over 13 years ago by Chris Bielow <[email protected]>

added hint for alternative cause of error message

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8422 6adb6e08-d915-0410-9...

93e3027df4867c34d98184773417aaadacfcd0df authored over 13 years ago by Timo Sachsenberg <[email protected]>

** trying to find IonSim bug in upcoming nightly builds

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8421 6adb6e08-d915-0410-9...

a3e85cd14a038d50425d2f976f9611b1d54502bd authored over 13 years ago by Chris Bielow <[email protected]>

** fixed linux compile error

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8420 6adb6e08-d915-0410-9...

f754bb94c60a1b1722d672e733bc1adc46b8e2dc authored over 13 years ago by Chris Bielow <[email protected]>

** fix for #227 (TOPPAS now uses a subdir of the temp directory for TOPPAS_tmp, e.g. /tmp/2011-07-07_170805_tupaia_420_1/TOPPAS_tmp/ such that multiple users should be able to run stuff concurrently

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8419 6adb6e08-d915-0410-9...

74dc7426641138784a47c66fdb5ad05d4f1c1d44 authored over 13 years ago by Chris Bielow <[email protected]>

** TOPPAS docu not hardcoded any longer

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8418 6adb6e08-d915-0410-9...

4b99b03799b7f88abd0116547c604b4cd9a6f157 authored over 13 years ago by Chris Bielow <[email protected]>

fixed PepXML test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8411 6adb6e08-d915-0410-9...

728ea3a40389ccf1cc3d5f02e2481e0dd158e465 authored over 13 years ago by Timo Sachsenberg <[email protected]>

** hint for OMSSAAdapter (put FASTA file on local HDD, rather than network share! 10x speed increase)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8400 6adb6e08-d915-0410-9...

a656b60b6f2e05ea5c5bec82b3e05fc6645a607b authored over 13 years ago by Chris Bielow <[email protected]>

** fixed bug introduced in [8396]

** MascotAdapterOnline does not return any proteins by default now (as they are incomplete anyway...

fa0b7600d43a2416df4cd982e563656647507e54 authored over 13 years ago by Chris Bielow <[email protected]>

** fixed cpp check style warning (MassCalculator)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8396 6adb6e08-d915-0410-9...

3d11cda57b00ab817c0a37963405aad82192916a authored over 13 years ago by Chris Bielow <[email protected]>

** fixed cpp check style warning

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8395 6adb6e08-d915-0410-9...

a5a09976df7318c82c1c17056cf9a46623c49ce7 authored over 13 years ago by Chris Bielow <[email protected]>

** fixed compile error for test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8387 6adb6e08-d915-0410-9...

f559d6b3cf8a844f0e93b789f3683738577ea42d authored over 13 years ago by Chris Bielow <[email protected]>

** fixed swapped output order for DC tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8386 6adb6e08-d915-0410-9...

f1e9af05eabc1642deda7ff7527df57a301352f8 authored over 13 years ago by Chris Bielow <[email protected]>

** Decharging speed up & OpenMP capable now

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8385 6adb6e08-d915-0410-9...

2ef6e34c5ed09648fe044c0cdb71d8bb361fd544 authored over 13 years ago by Chris Bielow <[email protected]>

fixed some cppcheck warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8384 6adb6e08-d915-0410-9...

1c1448e56900816f764f7985d2f9d955e41836b1 authored over 13 years ago by Stephan Aiche <[email protected]>

** minor

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8381 6adb6e08-d915-0410-9...

ee5d64d8dd83da9bdbf424ee4bec8079a1f85a17 authored over 13 years ago by Chris Bielow <[email protected]>

** cleaning up Decharger

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8380 6adb6e08-d915-0410-9...

d43884db68b56f4e3a23a71dee8aef5d9ca87ff6 authored over 13 years ago by Chris Bielow <[email protected]>

added override flag for writing calculated data as element coordinates in idxml

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8379 6adb6e08-d915-0410-9...

e8a84841d6db267c24a10525d52066c9b475f5dd authored over 13 years ago by Mathias Walzer <[email protected]>

** adding a debug option to MascotAdapterOnline

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8378 6adb6e08-d915-0410-9...

5791b177d34c265734af1d8f8a71583afd7a6535 authored over 13 years ago by Chris Bielow <[email protected]>

** initial fix for #313 - lets see if its sufficient... (the new MascotXML format still needs to be looked at)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8375 6adb6e08-d915-0410-9...

7b3bc07bcf72d810acaffbbdcfc9d816d3f756fc authored over 13 years ago by Chris Bielow <[email protected]>

** added missing include

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8366 6adb6e08-d915-0410-9...

2edca29483ccfac29ad2d035eefbeec6f043c285 authored over 13 years ago by Chris Bielow <[email protected]>

merged FileFilter (id-filtering) into head

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8365 6adb6e08-d915-0410-...

0de05095f49eb444f5fcb3e4f8b15a84b99447da authored over 13 years ago by Hendrik Brauer <[email protected]>

** moved code to C file

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8361 6adb6e08-d915-0410-9...

ebfe0b45767fa8409fbdda54694b2dd16d782754 authored over 13 years ago by Chris Bielow <[email protected]>

** enabled "Go to UID" for ConsensusFeatures in TOPPView

** docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8358 6adb6e08-d91...

fc8f007be3995d439d778155be797c53b93e4251 authored over 13 years ago by Chris Bielow <[email protected]>

** parameter order changed

** Docu reviewed
** added filtering by precursor charge to filefilter (Ticket #312)

git-svn-id: ...

11c7d3c5dfc896a203426c516822754c1fe3ba21 authored over 13 years ago by Chris Bielow <[email protected]>

added mutatble access to elements in elements db

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8343 6adb6e08-d915-0410-9...

a84e68cb13c5c7ecb5c5541bd1c4ec03b222e7bc authored over 13 years ago by Timo Sachsenberg <[email protected]>

** fixed missing GUI tools docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8342 6adb6e08-d915-0410-9...

2d57a5393e43331136e2bb8308f8337f05d90729 authored over 13 years ago by Chris Bielow <[email protected]>

** made building documentation more robust and work on VS2010 $(OutDir) is defined differently

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8341 6adb6e08-d915-0410-9...

18b7141982452752d24d89aeede92ae4f94cda2d authored over 13 years ago by Chris Bielow <[email protected]>

** ...

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8340 6adb6e08-d915-0410-9...

06567412957b35dda5ba2a7d77e0ccd45a988707 authored over 13 years ago by Chris Bielow <[email protected]>

** TOPPAS docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8339 6adb6e08-d915-0410-9...

15e73995d4f22290f7629d4ad4a6eabfe9d4bd7d authored over 13 years ago by Chris Bielow <[email protected]>

** some more minor fixes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8338 6adb6e08-d915-0410-...

58d1fc0b065623d926a276c74a0e8aaaa381d5d3 authored over 13 years ago by Chris Bielow <[email protected]>

** some docu fixes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8337 6adb6e08-d915-0410-9...

de4c4294e4e0fd91cf08bcd351c879f27daeec82 authored over 13 years ago by Chris Bielow <[email protected]>

** some more details for external project docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8336 6adb6e08-d915-0410-9...

4b936dc8bfbc0664f3af77483f257e32bd1825e9 authored over 13 years ago by Chris Bielow <[email protected]>

Fix EDTAFile test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8335 6adb6e08-d915-0410-...

ceaf1d0912442fba854d9aaeba971dbb8be37f96 authored over 13 years ago by Bastian Blank <[email protected]>

Support consensus variant of EDTA file format

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8334 6adb6e08-d915-0410-...

b9ed443c409e6b7f7896c137e2662ec02fe2e1ec authored over 13 years ago by Bastian Blank <[email protected]>

Use consensus map for EDTA files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8333 6adb6e08-d915-0410-...

a232cf488e1dd4b386cd1dcbac4dace677e893ef authored over 13 years ago by Bastian Blank <[email protected]>

some initial neutral loss support in OMSSAAdapter

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8332 6adb6e08-d915-0410-9...

c9ac3b3175b2dcb50a49ab6907edb25cdca9db92 authored over 13 years ago by Timo Sachsenberg <[email protected]>

imslib math functions integration

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8329 6adb6e08-d915-0410-9...

990d824ce5bd715c7285e5d8bbdbf85d334cb781 authored over 13 years ago by Timo Sachsenberg <[email protected]>

** fixed Docu issue (link to GUI tools not present in TOPP documentation)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8325 6adb6e08-d915-0410-9...

cd34fe00e104c162159eb03e915fbdfc19b38fee authored over 13 years ago by Chris Bielow <[email protected]>

fixed next test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8324 6adb6e08-d915-0410-...

1db1e199d87e5265e9dd3680b0e0edcb1b61c5ae authored over 13 years ago by Timo Sachsenberg <[email protected]>

corrected inaccurate mass in test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8323 6adb6e08-d915-0410-9...

f5e597c3e0e1f86674a58a65d4668aabc18a3ae3 authored over 13 years ago by Timo Sachsenberg <[email protected]>

bug 226: exact isotope masses in elementsdb - 2nd try

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8322 6adb6e08-d915-0410-9...

9816e9db02dfafecd6be6f4d0aa0800c34a28b7b authored over 13 years ago by Timo Sachsenberg <[email protected]>

revert to previous: wrong commit

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8321 6adb6e08-d915-0410-9...

7384c378417e8f232aead7daa03ae08b820c1b31 authored over 13 years ago by Timo Sachsenberg <[email protected]>

bug 226: exact isotope masses in elementsdb

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8320 6adb6e08-d915-0410-9...

f30ea5fcc7ede36fb27d83d24aef2d58db2cd256 authored over 13 years ago by Timo Sachsenberg <[email protected]>

identiy matrix as default_ TOPPTool

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8314 6adb6e08-d915-0410-9...

08dc4278f33e0349430d9d3e2cb0152302892d34 authored over 13 years ago by Sven Nahnsen <[email protected]>

identiy matrix as default

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8313 6adb6e08-d915-0410-9...

1968a52cb2cd86a66832794911d9f4c422756f1e authored over 13 years ago by Sven Nahnsen <[email protected]>

prefix option added

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8312 6adb6e08-d915-0410-9...

64cef33925569eeaa9d3ad3580c9d5b3a0257c30 authored over 13 years ago by Sven Nahnsen <[email protected]>

** fixed TOPPAS bug, which prevented using workflows that have a certain design (with input nodes serving as start nodes and entry nodes in the middle)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8309 6adb6e08-d915-0410-9...

002e523629f3c4b60b5515aa81bff31e4fbea96a authored over 13 years ago by Chris Bielow <[email protected]>

fixed small typo in documentation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8308 6adb6e08-d915-0410-9...

d6eba9987c11292c903dde6bd18137658e0aaea8 authored over 13 years ago by Stephan Aiche <[email protected]>

** added NATIVE EOL-style to *.C and *.h, ....

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8307 6adb6e08-d915-0410-9...

cba10d425b8174ef8e81b8104091c29d518fb2d5 authored over 13 years ago by Chris Bielow <[email protected]>

** some docu for simulator

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8306 6adb6e08-d915-0410-9...

aa418938791f64af15c4c9b457826d66b3e121ef authored over 13 years ago by Chris Bielow <[email protected]>

updated CHANGELOG to include changes from [8304]

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8305 6adb6e08-d915-0410-9...

12491be6a053a86c4b7c6de9376a746616b869fe authored over 13 years ago by Stephan Aiche <[email protected]>

fixed #308 by removing the AASequence(ConstIt, ConstIt) constructor; tests for EnzymaticDigestion and AASequence were also extended

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8304 6adb6e08-d915-0410-9...

3ad2caff697755c653a2a015d2abfc7e1235189d authored over 13 years ago by Stephan Aiche <[email protected]>

added HighResPrecursorMassCorrector to ToolHandler

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8302 6adb6e08-d915-0410-9...

bd407c8564583f3bd9e857effac5aa0ad85025f7 authored over 13 years ago by Timo Sachsenberg <[email protected]>

simple high resolution precursor mass corrector

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8301 6adb6e08-d915-0410-9...

0c0c4537262f1c6abfba964f2e0910fdf062f1ae authored over 13 years ago by Timo Sachsenberg <[email protected]>

more improvements for O18Labeler_test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8298 6adb6e08-d915-0410-9...

a6f337ffc8bebe5e7e203796a4f4740193cf6d59 authored over 13 years ago by Stephan Aiche <[email protected]>

improved O18Labeler_test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8296 6adb6e08-d915-0410-9...

d8ae7bae0cff70b12800d3fcbd276bf8adf66421 authored over 13 years ago by Stephan Aiche <[email protected]>

** fixed bug in TOPPAS introduced in [8281] (bin path with spaces will cause crash)

** minor docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8295 6adb6e...

2f1d739f16a3195d51433ab6828c80d3dc244a17 authored over 13 years ago by Chris Bielow <[email protected]>

** better error messages for MascotXMLHandler

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8292 6adb6e08-d915-0410-9...

8d4068d586485b6d875c4540ac55b294de7557e7 authored over 13 years ago by Chris Bielow <[email protected]>

** avoiding segfault when invalid mzML is fed to MzMLHandler (see #305)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8291 6adb6e08-d915-0410-9...

c197063dd7e6a4af4fbabedbb705f66db53549f5 authored over 13 years ago by Chris Bielow <[email protected]>

** better error handling for MascotAdapterOnline (when server is overloaded)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8288 6adb6e08-d915-0410-9...

ca1828879a71fd1809f29c7b8cf44fea0cb03a2e authored over 13 years ago by Chris Bielow <[email protected]>

** fixed error message when TOPP tool call fails

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8287 6adb6e08-d915-0410-9...

2c200728a3d90a6ea0ec960d2defeeca09e44bfa authored over 13 years ago by Chris Bielow <[email protected]>

fixed Mac OS X specific problems in getExecutablePath()

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8282 6adb6e08-d915-0410-9...

4e4556611c01eefb62c0614c1b71fba8a135acb5 authored over 13 years ago by Stephan Aiche <[email protected]>

** first attempt to fix #303

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8281 6adb6e08-d915-0410-9...

b607dee57cc4ea648295034aeb768eeb4edd3dba authored over 13 years ago by Chris Bielow <[email protected]>

** minor docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8277 6adb6e08-d915-0410-9...

1d7d277ef490f7740319d11b6d4af48be1f6b153 authored over 13 years ago by Chris Bielow <[email protected]>

** fixed some warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8276 6adb6e08-d915-0410-...

bbe21f94c6952aaa9b8874bcca74694f906158cf authored over 13 years ago by Chris Bielow <[email protected]>

** one more

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8275 6adb6e08-d915-0410-9...

70809a891cae8eb20aff7e355598a214b2e22db7 authored over 13 years ago by Chris Bielow <[email protected]>

** fixed more cpp check errors

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8274 6adb6e08-d915-0410-9...

bf9ef1e69484166fc5b3ca5ce017407fecfa2488 authored over 13 years ago by Chris Bielow <[email protected]>