github.com/OpenMS/OpenMS commits | Ecosyste.ms: OpenCollective

** fixed compile error in IMS/Weights.C

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8717 6adb6e08-d915-0410-9...

b342a1bd25ed37378cf6f04484215fe813b3bfb8 authored about 13 years ago by Chris Bielow <[email protected]>

** removed type from ItraqAnalyzer

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8716 6adb6e08-d915-0410-9...

ad33c7eae6b305fb2e8e1b33c97291eab76a6298 authored about 13 years ago by Chris Bielow <[email protected]>

split of CompNovo and CompNovoCID into separate TOPP tools

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8715 6adb6e08-d915-0410-9...

c535631556d71b284d030387c8cdc6c9826c686b authored about 13 years ago by Timo Sachsenberg <[email protected]>

removed typed-FeaturedFinder and created FeatureFinder(Centroided|IsotopeWavelet|MRM); fixed some untyped NoiseFilder docu issues

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8713 6adb6e08-d915-0410-9...

a10e55e39e898bff193e6050e3922cac9a4f087e authored about 13 years ago by Stephan Aiche <[email protected]>

docu for TransformationEvaluation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8712 6adb6e08-d915-0410-9...

e50a015b11ce64d1b7f9796efbfed168292fda9d authored about 13 years ago by Hendrik Weisser <[email protected]>

simple util to evaluate (RT) transformations

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8711 6adb6e08-d915-0410-9...

275dd5eefc88c9f7f130b7b1ff2675c274bc654e authored about 13 years ago by Hendrik Weisser <[email protected]>

fixed formatting to meet coding guidelines

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8710 6adb6e08-d915-0410-9...

cbd60f9f5e2f325c4a45ab8e09a9d1c9b309e206 authored about 13 years ago by Hendrik Weisser <[email protected]>

more ims related clean up (moved MassDecomposition classes also to chemistry)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8709 6adb6e08-d915-0410-9...

1a44e3c59fbbdf49d28489f356a7e95fbd990abd authored about 13 years ago by Stephan Aiche <[email protected]>

old PeakPicker TOPPTool removed

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8708 6adb6e08-d915-0410-9...

a3fc0405d85244eb86533b41b632e2f18fd14bf2 authored about 13 years ago by Erhan Kenar <[email protected]>

flat PeakPickers, recommit

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8707 6adb6e08-d915-0410-9...

ce06bb97e194bc7a276867afc724122db7a44dec authored about 13 years ago by Erhan Kenar <[email protected]>

Split NoiseFilter into NoiseFilterGaussian and NoiseFilterSGolay; update tests and registration

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8706 6adb6e08-d915-0410-...

878405359763a00c9a889c0ebd41e924484a1adb authored about 13 years ago by Bastian Blank <[email protected]>

some IMS code cleanup; added IOException to Exception

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8705 6adb6e08-d915-0410-9...

188858ea93b0d2b1020aebdd7581b4618840961a authored about 13 years ago by Stephan Aiche <[email protected]>

PeakPickers flattened (PeakPickerHiRes, PeakPickerWavelet

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8704 6adb6e08-d915-0410-9...

eb351bc3dca68091c75ec77c0a5070f7b417c1d9 authored about 13 years ago by Erhan Kenar <[email protected]>

HighResPrecursorMassCorrector: Use correct type for iteration

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8703 6adb6e08-d915-0410-...

9cadfd31f5519d79f79eecaae316ce03c4fa450c authored about 13 years ago by Bastian Blank <[email protected]>

Don't longer link NetCDF

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8701 6adb6e08-d915-0410-9...

3a3c08fb87771bb7fdd5e1f31d80e024f412f1a0 authored about 13 years ago by Bastian Blank <[email protected]>

** fixed bug in IDFileConverter.C

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8700 6adb6e08-d915-0410-9...

b6766f9634fc4ed43033e794663f3f9051f444e8 authored about 13 years ago by Chris Bielow <[email protected]>

removed ANDIMS from OpenMS

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8698 6adb6e08-d915-0410-9...

0a37550cd19faf1a1484739cc8456b3cc63ae64e authored about 13 years ago by Timo Sachsenberg <[email protected]>

fixed ticket #326 ('PepXMLFile: use RT of MS2 spectra for peptide RT'), some clean-up

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8697 6adb6e08-d915-0410-9...

9308640b24178c0c579efc031035243941ade052 authored about 13 years ago by Hendrik Weisser <[email protected]>

moved mass decomposition parts of imslib to OpenMS/CHEMISTRY/MASSDECOMPOSITION to remove imslib from contrib

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8694 6adb6e08-d915-0410-9...

5b85fec22bd3f737056d0be04d678d1b43091973 authored about 13 years ago by Stephan Aiche <[email protected]>

TOPPAS: slightly improved zooming / panning stuff (to be continued soon...)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8693 6adb6e08-d915-0410...

2848161afac5ac8920e5bac843cc0f9474cdaae8 authored about 13 years ago by Johannes Veit <[email protected]>

cosmetic changes (coding style compliance)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8690 6adb6e08-d915-0410-...

b770a038b550205ce40e31505bfd5c311328dcdb authored about 13 years ago by Oliver Kohlbacher <[email protected]>

added export of IDs to FASTA to IDFileConverter to support homology-based proteomics ('de novo read mapping')

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8689 6adb6e08-d915-0410-...

2ec66bc083f598384f762044e4f8ccb4270fffd6 authored about 13 years ago by Oliver Kohlbacher <[email protected]>

fixed some more relicts from the NNLS rename

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8688 6adb6e08-d915-0410-9...

5ea9f198141601155316f8a429f5d7b3ba5ce925 authored about 13 years ago by Stephan Aiche <[email protected]>

fixed cmake error, nnls -> NNLS in sources.cmake

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8687 6adb6e08-d915-0410-9...

5bc9a84edf8abe79b1a33eb2d97066b34ffccc75 authored about 13 years ago by Stephan Aiche <[email protected]>

TOPPAS: Fixed #331 !

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8686 6adb6e08-d915-0410...

6e50270a2b366b56956417fe38c6d82f076e23f1 authored about 13 years ago by Johannes Veit <[email protected]>

** renamed file

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8685 6adb6e08-d915-0410-9...

a6fe318edf733f5d626e8af6506f12c108d157ed authored about 13 years ago by Chris Bielow <[email protected]>

** new LGPL license for NNLS

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8684 6adb6e08-d915-0410-9...

9fea32e5bc74a2330c6bb2fc0abc4a8e4769f02e authored about 13 years ago by Chris Bielow <[email protected]>

** fixed WP plugin & added README

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8683 6adb6e08-d915-0410-9...

801f1dcf1dea729566574fe4565ee4fc85097772 authored about 13 years ago by Chris Bielow <[email protected]>

** fix WP

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8682 6adb6e08-d915-0410-9...

726531162bc8807632c278e80d63fffcce360314 authored about 13 years ago by Chris Bielow <[email protected]>

** hiding description TOPPAS (experimental)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8681 6adb6e08-d915-0410-9...

aee650a5d848ad6a9ab07b07ae9699214c1b0425 authored about 13 years ago by Chris Bielow <[email protected]>

TOPPAS: changed drag&drop description "currently_unused_mimedata" to the name of the node that is being dragged (visible on MacOS)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8679 6adb6e08-d915-0410...

2845db7e0d9185b6e5e156cf9f981cfb08e535c3 authored about 13 years ago by Johannes Veit <[email protected]>

TOPPAS: replaced chord by SVG recycling symbol for recycling mode

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8678 6adb6e08-d915-0410...

69f339819053ba3970a8b5f5cb0f7ac32190c6ca authored about 13 years ago by Johannes Veit <[email protected]>

** always use .toppas for saving pipelines from online repository

** propose a filename for the downloaded file

git-svn-id: https://open-ms.svn.sourceforge.net/sv...

afa9d886ec98872e59f48215e604808ddcb510e8 authored about 13 years ago by Chris Bielow <[email protected]>

** made some DC output non-required

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8676 6adb6e08-d915-0410-9...

d13bd2230d09ea00a29dc854567b486c005c3f1a authored about 13 years ago by Chris Bielow <[email protected]>

TOPPAS: fixed #332

However, there might still be scenarios in which the proxy settings are not detected correctly (...

7dd470df32ebf5e61a806acad4765c7414c4e0a9 authored about 13 years ago by Johannes Veit <[email protected]>

** fixed wrong key_id for WP plugin

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8674 6adb6e08-d915-0410-9...

68821036a298f78a67af3d3225c02d67fef434bd authored about 13 years ago by Chris Bielow <[email protected]>

** wordpress plugin for showing TOPPAS workflow descriptions automatically

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8673 6adb6e08-d915-0410-9...

088e672b8d3a4b4516ca8a6caf3f42435aee81a5 authored about 13 years ago by Chris Bielow <[email protected]>

after the library split the GUI tools were missing in the installer packages

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8672 6adb6e08-d915-0410-9...

992d3bb388aba7fbe9ec64f5ddad593960ce72b1 authored about 13 years ago by Stephan Aiche <[email protected]>

Made image export work on linux and mac (changed image format RGB16 -> RGB32)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8662 6adb6e08-d915-0410...

0707c35459820bac4e896e04389153fe581dc0c8 authored about 13 years ago by Johannes Veit <[email protected]>

Added "Export as image" feature for TOPPAS workflows (svg, jpg, png)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8661 6adb6e08-d915-0410...

af7e8a2e358c6e0eea5ec9988e5f8eec3e317996 authored about 13 years ago by Johannes Veit <[email protected]>

added mzq to the buildtree

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8657 6adb6e08-d915-0410-9...

7d15e31868d6f34c4655b49cd4a4c7ce5dbfe48a authored about 13 years ago by Mathias Walzer <[email protected]>

added a first working MzQuantML(short mzq) class set - already working: write consensusMap from itraq/silacAnalyzer

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8656 6adb6e08-d915-0410-9...

5db49df545720ada07c3cbb342fdf17a234cb01d authored about 13 years ago by Mathias Walzer <[email protected]>

** fixed broken svn_revsison_update on windows

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8655 6adb6e08-d915-0410-9...

b051c2960abba81e096a90759380a4e4f0d8cd43 authored about 13 years ago by Chris Bielow <[email protected]>

added inline function for convenience: getUnchargedMass, assigned myself as maintainer

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8650 6adb6e08-d915-0410-9...

32f5de7d16feae8a36d67a04df65d55f77d5b820 authored about 13 years ago by Mathias Walzer <[email protected]>

added some binary preddicates with tolerance-considerations

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8649 6adb6e08-d915-0410-9...

c499279384a48ccfc53484e177a0fe5b39394999 authored about 13 years ago by Mathias Walzer <[email protected]>

** fix for svn_rev update and VS9

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8648 6adb6e08-d915-0410-9...

83dfc783ccc289fbc6bdcb0a728f7e7e08d1b4d1 authored about 13 years ago by Chris Bielow <[email protected]>

** linux compile fix (forgot std::)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8647 6adb6e08-d915-0410-9...

536fe8b87f53b80fdb41fe93367b4fc705444427 authored about 13 years ago by Chris Bielow <[email protected]>

** "INFINITY" is not understood by VS X

** OPENMS_DLLAPI is NOT for template classes!!! (see OpenMS C++ Guide)

git-svn-id: https://open-...

43c06d4b5de10ba06d5b65d1d0e63832850268db authored about 13 years ago by Chris Bielow <[email protected]>

** added FAQ for svn upgrade

** homepage edit FAQ

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8636...

a1970e21f330ada629d4d4e68b29945f7e20fd00 authored about 13 years ago by Chris Bielow <[email protected]>

Reintegrate SILACAnalyzer branch

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8629 6adb6e08-d915-0410-...

6618663ac6b538e2fa377adf11d8cc5dead3193a authored about 13 years ago by Bastian Blank <[email protected]>

fixed severe bug in peak width estimator

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8627 6adb6e08-d915-0410-9...

7a2aabbb79a4429e95abfe7454ab98156939102c authored about 13 years ago by Timo Sachsenberg <[email protected]>

fixed outdated docu and tutorial

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8614 6adb6e08-d915-0410-9...

271e00e8d7aef98d554ffab01528ade992ccd036 authored about 13 years ago by Alexandra Zerck <[email protected]>

** fixed wrong usage of "and" instead of "&&" -- windows compile error!!!

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8610 6adb6e08-d915-0410-9...

0a9cf1b872f2be4dcaf9781ddeef8f808c6c273c authored about 13 years ago by Chris Bielow <[email protected]>

Use svnversion and some cmake magic to generate svn revision header

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8609 6adb6e08-d915-0410-...

9b0fac9eae07e92450c8ada735d1529321ab54d6 authored about 13 years ago by Bastian Blank <[email protected]>

consensus features can now be colored

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8607 6adb6e08-d915-0410-9...

1914b15ec339b8571b2ac2e5f3c82ad037190e29 authored about 13 years ago by Timo Sachsenberg <[email protected]>

** more docu for CMAKE_BUILD_TYPE

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8606 6adb6e08-d915-0410-9...

2e135954647c67ee2fbb42f1ea6235b7e6796675 authored about 13 years ago by Chris Bielow <[email protected]>

** docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8605 6adb6e08-d915-0410-9...

f9250f2e4669060b1808fd5d431b95425122d941 authored about 13 years ago by Chris Bielow <[email protected]>

Remove openms specific build type setting

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8604 6adb6e08-d915-0410-9...

1c655420a90ab5b7fb1655ff5030d4795cbb6c96 authored about 13 years ago by Bastian Blank <[email protected]>

Added experimental mz dependent peak width estimation for high res data

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8603 6adb6e08-d915-0410-9...

299c0adf8ebbc5cde49b16b655b82d6eba17d6a8 authored about 13 years ago by Timo Sachsenberg <[email protected]>

made pick methods const

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8602 6adb6e08-d915-0410-9...

f72b32e9a1b073f1207cdeea42addf17fa441567 authored about 13 years ago by Timo Sachsenberg <[email protected]>

fixed consensusXML to not try to write proteinid refs if protein id was discarded (but peptide ids were not)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8601 6adb6e08-d915-0410-9...

d1859617ed4906a5fe1c522f9fd40415641b476f authored about 13 years ago by Mathias Walzer <[email protected]>

distance variance based peak type estimator

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8599 6adb6e08-d915-0410-9...

adb39e4bf03909a030b9e9e612b4ab934b129145 authored about 13 years ago by Timo Sachsenberg <[email protected]>

** minor fix for build system variable naming

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8597 6adb6e08-d915-0410-9...

35ae528bfb5cefbdbc75859336321bb67f49de14 authored about 13 years ago by Chris Bielow <[email protected]>

** cleaned and speedup for DecoyDatabase

** removed 'include_contaminats' flag - the presence of the file is good enough

git-svn-id: http...

058f279a463bf9a0cca3d35e8018f721421acda0 authored about 13 years ago by Chris Bielow <[email protected]>

** fixed bug #323 in MapAligner (-apply_given_trafo's "invert" only works from commandline, not from INI file. Wrong usage of parameter shadowing.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8595 6adb6e08-d915-0410-9...

fa9cd08a09165b17bd9d377aec79c27bc897cd85 authored about 13 years ago by Chris Bielow <[email protected]>

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8594 6adb6e08-d915-0410-941f-83917bcadc18

6caf119e80df129c4a71a5ac7f93393a3815932e authored about 13 years ago by Sven Nahnsen <[email protected]>

fix for #209 .. DateTime now is able to ignore specific parts of ISO dates which Qt can not handle in versions < 4.7

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8593 6adb6e08-d915-0410-9...

9daa7ccc856f168e4e29869f3702eda9e7d0c88a authored about 13 years ago by Stephan Aiche <[email protected]>

some CHANGELOG entries for the upcoming release

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8591 6adb6e08-d915-0410-9...

8b023a6d01f38e456828d20d4c9962c858ba7cfa authored about 13 years ago by Timo Sachsenberg <[email protected]>

if decoys are added, the q-value is now determined by the closest target score (was 0)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8590 6adb6e08-d915-0410-9...

d62439415d5bcb372d0c56810e0da913fa842efa authored about 13 years ago by Timo Sachsenberg <[email protected]>

same bugfix at another code position

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8589 6adb6e08-d915-0410-9...

8be0514f2f7aaa3313b6c8c0cd032185ba64d169 authored about 13 years ago by Alexandra Zerck <[email protected]>

removed debug output

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8588 6adb6e08-d915-0410-9...

a95cadbbd277540c03b1a5fd3c33e657bfb614f5 authored about 13 years ago by Alexandra Zerck <[email protected]>

fixed another bug in area calculation during optimization

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8587 6adb6e08-d915-0410-9...

38dcd8ec02f2b3312e267976432a96ca48429cc7 authored about 13 years ago by Alexandra Zerck <[email protected]>

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8584 6adb6e08-d915-0410-9...

8d81ed7711a5990e57f57c2b986eb1af17eb55b8 authored about 13 years ago by Timo Sachsenberg <[email protected]>

made coordinate type in DPosition a template parameter (default is DoubleReal); based on the basic idea and needs of Bastian

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8583 6adb6e08-d915-0410-9...

0f4da5800aa53dd61390b63d1f3ade88a4a7ab04 authored about 13 years ago by Stephan Aiche <[email protected]>

fixed windows compile error

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8569 6adb6e08-d915-0410-9...

561c70aa5a2a9b455d210f63ed6cfb3c3694cdda authored about 13 years ago by Alexandra Zerck <[email protected]>

use symbolic names instead of values; just for consistency in the code

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8566 6adb6e08-d915-0410-9...

bb973f6538b394956081a7a0a21153381d836be9 authored about 13 years ago by Stephan Aiche <[email protected]>

DTA2DFile: Fix stored header (Merge from SILACAnalyzer)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8564 6adb6e08-d915-0410-...

8a2ac57b1c6ee9f4ce8c4c4ccbb38340c4ae1471 authored about 13 years ago by Bastian Blank <[email protected]>

fixed test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8563 6adb6e08-d915-0410-9...

9c1552cb7ff9557546843148a28eb52a7ab6d294 authored about 13 years ago by Alexandra Zerck <[email protected]>

FileInfo: New machine readable output for e.g. R (merge from SILACAnalyzer)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8555 6adb6e08-d915-0410-...

3ae1d1198a86846334794b23df61d594a501f6f6 authored about 13 years ago by Bastian Blank <[email protected]>

FileConverter: Support output of TIC data in DTA2D files (merge from SILACAnalyzer)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8554 6adb6e08-d915-0410-...

903c96704357598d6d41cc815eaaa6d10a325463 authored about 13 years ago by Bastian Blank <[email protected]>

reversed merges [8541],[8542] and [8543]

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8545 6adb6e08-d915-0410-9...

727732dc3d2523101270cf298578e2a96228ea86 authored about 13 years ago by Stephan Aiche <[email protected]>

fixed some checker warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8544 6adb6e08-d915-0410-9...

7923042681d07aba7f06eb6f7b1a74d7b4a4aa1a authored about 13 years ago by Stephan Aiche <[email protected]>

FileInfo: Add secondary output for better R integration (merge from SILACAnalyzer)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8543 6adb6e08-d915-0410-...

7bfc206f64bdb8802590bb5f86fa96ee5d2e83eb authored about 13 years ago by Bastian Blank <[email protected]>

FileConverter, DTA2DFile: Support output of total ion chromatograms (merge from SILACAnalyzer)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8542 6adb6e08-d915-0410-...

9df8beb2d853c98689e74fcd684bfaff3724be48 authored about 13 years ago by Bastian Blank <[email protected]>

MSExperiment: Add support for total ion chromatograms (merge from SILACAnalyzer)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8541 6adb6e08-d915-0410-...

9f97641dca99a41cf85b916f5ad1a9682fc3fa31 authored about 13 years ago by Bastian Blank <[email protected]>

fixed unknown pragma warning

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8529 6adb6e08-d915-0410-9...

f8badb1e4549ea2026703afb31b262aa1860549c authored about 13 years ago by Stephan Aiche <[email protected]>

fixed some clang warnings by adding a diagnostic pragma to DataValue_test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8525 6adb6e08-d915-0410-9...

4f830dc9589cdd996008a48e1f0ed71660b6b28e authored about 13 years ago by Stephan Aiche <[email protected]>

added draw axis option to ImageCreater plus some refactoring

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8523 6adb6e08-d915-0410-9...

43da5276745dcfa564e763ef03d7ebe609aa47e9 authored about 13 years ago by Timo Sachsenberg <[email protected]>

Fixed wrong zoom level when opening workflows

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8518 6adb6e08-d915-0410...

84f04ec6afe7739e9318512d53d771d5fb77dab2 authored about 13 years ago by Johannes Veit <[email protected]>

** removed QTextEdit from TOPPASScene as a qwidget has nothing to do there

** fixed some Test Names
** minor cleanup

git-svn-id: https://open-ms.svn.sourceforge.net/svnroo...

cc0c28937eb50d58240553ee2a69c0c87ac7bb64 authored about 13 years ago by Chris Bielow <[email protected]>

IdentificationView added * to mark modification sites

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8510 6adb6e08-d915-0410-9...

384dd364ba87190d2cc16b82388223bd363f20a7 authored about 13 years ago by Timo Sachsenberg <[email protected]>

better automatic visible area selection in IdentificationView

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8509 6adb6e08-d915-0410-9...

6dc2121b7a76e6bac28e5b436a9fbb3fcd9bce4d authored about 13 years ago by Timo Sachsenberg <[email protected]>

Some IdentificationView additions

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8507 6adb6e08-d915-0410-9...

81c7adf87535c3bc717ee542795b6c63f825ad7e authored about 13 years ago by Timo Sachsenberg <[email protected]>

fixed bug in area calculation after optimization

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8506 6adb6e08-d915-0410-9...

c6e87c1b3c935d7fcf1f7bd713d32d0b7d11eb55 authored about 13 years ago by Alexandra Zerck <[email protected]>

** TOPPAS example pipeline using Recylcing

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8505 6adb6e08-d915-0410-9...

78906d9b4f958d81103862439e7d04a349aef1d6 authored about 13 years ago by Chris Bielow <[email protected]>

** updated example toppas workflows to TOPPAS 1.9

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8500 6adb6e08-d915-0410-9...

17f3956b74fbc8cc109310fc2739de6b68ffece1 authored about 13 years ago by Chris Bielow <[email protected]>

added better peak annotation in IdentificationView

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8499 6adb6e08-d915-0410-9...

9d2468c63addd61e4699e309689c6b89188d060d authored about 13 years ago by Timo Sachsenberg <[email protected]>

** fixed bug: a TOPPAS pipeline designed from scratch did not support "Open in TOPPView" - only after store&reload

** fixed a bug: an invalid edge connected to an output node was not detected as such
** warning w...

bd67fb505333b4d3a87aee0341b3015860e7f8bc authored about 13 years ago by Chris Bielow <[email protected]>

also exclude Emission Chromatograms from range calculation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8494 6adb6e08-d915-0410-9...

17a4ed79dc6391884e5303e34b74e7b8e587871f authored about 13 years ago by Timo Sachsenberg <[email protected]>

bugfix

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8493 6adb6e08-d915-0410-9...

ae82797dc42cfbe7af91b047041760b9bd2efce4 authored about 13 years ago by Alexandra Zerck <[email protected]>