github.com/OpenMS/OpenMS commits | Ecosyste.ms: OpenCollective

slight changes to CTD format

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8869 6adb6e08-d915-0410...

6ec7413fa124d98ed86dff6b85ccf8de7e6c71cf authored about 13 years ago by Johannes Veit <[email protected]>

Fixed TOPPAS file extension checks (valid types are now in "restrictions", not within "description")

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8868 6adb6e08-d915-0410...

44fd5e91b131389310d5edaf8a62aa4e7b3a8e44 authored about 13 years ago by Johannes Veit <[email protected]>

labeling parameters are now passed correctly to the labelers (problem introduced while fixing #344); on behalf of waldi

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8867 6adb6e08-d915-0410-9...

d760aed250d0081de9e04777e119c3bca3c2d094 authored about 13 years ago by Stephan Aiche <[email protected]>

** fixed some compile errors on windows for MassTrace stuff

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8866 6adb6e08-d915-0410-9...

10c19082bd8cef1899678a6c59286b4c0cbbb9c3 authored about 13 years ago by Chris Bielow <[email protected]>

workaround for #352

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8865 6adb6e08-d915-0410-9...

85b3c542e70e14ab6086064fad39ff9555a08355 authored about 13 years ago by Stephan Aiche <[email protected]>

MassTraceDetection: Fix include

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8864 6adb6e08-d915-0410-...

daf3481e39d4e5e7fd7cc7416b96d16608baa08d authored about 13 years ago by Bastian Blank <[email protected]>

LowessSmoothing: Add missing includes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8863 6adb6e08-d915-0410-...

5284a399490c1f7ffe4c503abf07eb2149b4c37f authored about 13 years ago by Bastian Blank <[email protected]>

MassTraceExtractor (Limited Edition)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8862 6adb6e08-d915-0410-9...

98471aa9bb8166c2c0f352ff044093b8edd14d3c authored about 13 years ago by Erhan Kenar <[email protected]>

** fixed Open-Containing-Folder issue in TOPPAS when using relative paths as output-dir

** removed some debug output of TOPPAS

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/o...

2a8cca4263658a247cb5c0dddaa262f937dbd07c authored about 13 years ago by Chris Bielow <[email protected]>

** fixed timeout issue in MascotRemoteQuery

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8860 6adb6e08-d915-0410-9...

73ef28cd45aed95d5bbadaa89cc1fea4c764185d authored about 13 years ago by Chris Bielow <[email protected]>

MS2 Simulator now uses SVMWrapper

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8859 6adb6e08-d915-0410-9...

85aeb02300318b4c3d326b729d11927d6bb24a17 authored about 13 years ago by Sandro Andreotti <[email protected]>

Moved valid file types from "description" to "restrictions" (*.mzML,*.featureXML, and so on...)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8858 6adb6e08-d915-0410...

a9e783049115f72944b995189065ea9c36e3f924 authored about 13 years ago by Johannes Veit <[email protected]>

another fix for the cppcheck issues

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8857 6adb6e08-d915-0410-9...

990574d4900ee7e712cbbe578f4162ad1f96a5dd authored about 13 years ago by Stephan Aiche <[email protected]>

restructured static initialization in SvmTheoreticalSpectrumGenerator

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8856 6adb6e08-d915-0410-9...

bde811dc97f5fdec29a484bf4c7e8af4d3ede470 authored about 13 years ago by Stephan Aiche <[email protected]>

fixed incorrext include path for cppcheck.cmake

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8855 6adb6e08-d915-0410-...

c07d578dba528612302ebc5ae7ccf0784f036d49 authored about 13 years ago by Oliver Kohlbacher <[email protected]>

fixed FeatureLinkerLabeled output test issue

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8854 6adb6e08-d915-0410-9...

f1b14cf5fd57a98d970489421a80ce15cf7ec82e authored about 13 years ago by Stephan Aiche <[email protected]>

fixed cppcheck tests issue

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8853 6adb6e08-d915-0410-9...

c18b1b2637079a95199a78dd262b2b081f4ee03e authored about 13 years ago by Stephan Aiche <[email protected]>

** replaced manual list of TOPP tools in TEST/TOPP/CMakeLists.txt with the actual TOPPTools list from build system

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8852 6adb6e08-d915-0410-9...

541ae653d2e5b339d734f6e084b5ca3b101604dc authored about 13 years ago by Chris Bielow <[email protected]>

removed FeatureLinker TOPP tool

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8851 6adb6e08-d915-0410-9...

8ead89f949286d70f9228db0bfcde1163f454921 authored about 13 years ago by Hendrik Weisser <[email protected]>

created new TOPP tool FeatureLinkerUnlabeledQT for 'FeatureLinker -type unlabeled_qt', updated tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8850 6adb6e08-d915-0410-9...

a0434c37f54a764000c172163e31581c69460294 authored about 13 years ago by Hendrik Weisser <[email protected]>

small docu fix

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8849 6adb6e08-d915-0410-9...

1e4973920dba3dc010d25be72bf4428c57b9204f authored about 13 years ago by Hendrik Weisser <[email protected]>

created new TOPP tool FeatureLinkerUnlabeled for 'FeatureLinker -type unlabeled', updated tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8848 6adb6e08-d915-0410-9...

dc43a31654bfd79a3810b60d3c3c1cdd9ff837d9 authored about 13 years ago by Hendrik Weisser <[email protected]>

fixed grammar (docu)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8847 6adb6e08-d915-0410-9...

11cbc4d5dd37345bf2400e8524bb22ea261c7a5b authored about 13 years ago by Hendrik Weisser <[email protected]>

updated docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8846 6adb6e08-d915-0410-9...

c61409232c62158099df3097b67746f7735b7a38 authored about 13 years ago by Hendrik Weisser <[email protected]>

created new TOPP tool FeatureLinkerLabeled for 'FeatureLinker -type labeled', updated tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8845 6adb6e08-d915-0410-9...

36bac3636f205ca4117a686db73cc924e9d39ae5 authored about 13 years ago by Hendrik Weisser <[email protected]>

* fixed some tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8844 6adb6e08-d915-0410-9...

ed4b8b5208ad40b8701c6466a4d7b601a30b5c9b authored about 13 years ago by Chris Bielow <[email protected]>

** fixed WSDL test error

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8843 6adb6e08-d915-0410-9...

dd5ebc1d8ac7cf187816452723d116c707ef8cdd authored about 13 years ago by Chris Bielow <[email protected]>

fixed consensusid issue in O18Labeler_test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8842 6adb6e08-d915-0410-9...

1e7acfa1e7a8661b085995e64265a0797d84fb10 authored about 13 years ago by Stephan Aiche <[email protected]>

fixed some TOPPBase_test problems

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8841 6adb6e08-d915-0410-9...

f0c9d1fb9116acd03a60d6d105449f9917482f8b authored about 13 years ago by Stephan Aiche <[email protected]>

** write_CTD extended for GenericWrapper

** type handling cleaned up

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/Open...

2e5873607a67f10e1a15b6f87c729dbb7c59d3ae authored about 13 years ago by Chris Bielow <[email protected]>

** removed OpenMSInfo from type check (its not a TOPP tool)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8838 6adb6e08-d915-0410-9...

9990be4b349071a7ac37db8222c7b88759da25ce authored about 13 years ago by Chris Bielow <[email protected]>

** fixed compile error: unsupported usage of .data()

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8837 6adb6e08-d915-0410-9...

9752c343b7537a18f57b24f80756dbcae9046db7 authored about 13 years ago by Chris Bielow <[email protected]>

fixed remaining name problems of PeakPicker(Wavelet|HiRes); only the 'custom unreleased software tool' problem remains

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8836 6adb6e08-d915-0410-9...

65ca5d3036096b1424046e914b791b714625fcc0 authored about 13 years ago by Stephan Aiche <[email protected]>

updated CHANGELOG, removed type from MSSimulator

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8835 6adb6e08-d915-0410-9...

0834cdbbd2130d0ab1feb8d5e047068ff149381d authored about 13 years ago by Stephan Aiche <[email protected]>

TOPPAS: word wrapping for long tool names on nodes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8834 6adb6e08-d915-0410...

eabb6f25d4a614a66b60a25e3befb0414f736ff1 authored about 13 years ago by Johannes Veit <[email protected]>

Properly rename PeakPicker into PeakPickerHiRes and PeakPickerWavelet

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8833 6adb6e08-d915-0410-...

7f743b75a36a73fd5e21d60f6c9277b3bfe35541 authored about 13 years ago by Bastian Blank <[email protected]>

Fix output filename of NoiseFilter tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8832 6adb6e08-d915-0410-...

7b41c7e1ed606c0b0c031f37646b1687f6e1b370 authored about 13 years ago by Bastian Blank <[email protected]>

Merge SILACAnalyzer branch

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8831 6adb6e08-d915-0410-...

2c3032a7409e344ee06d7e36637d092a735cf0df authored about 13 years ago by Bastian Blank <[email protected]>

added missing boost libraries

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8829 6adb6e08-d915-0410-...

196bd6919174db1723b87d5b78e7eec5ff324083 authored about 13 years ago by Oliver Kohlbacher <[email protected]>

Require cmake 2.6.3 for Qt4 package components support

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8828 6adb6e08-d915-0410-...

999a09c27f711112b64ca1d8264de9955b4039bf authored about 13 years ago by Bastian Blank <[email protected]>

merged the default mechanism of CMAKE for identifiying library search

paths (-DCMAKE_FIND_ROOT_PATH) and the openMS macros (CONTRIB_CUSTOM_DIR)
and added a few fixes f...

857fc2724eeb53390dd31612717780f24c00c81b authored about 13 years ago by Oliver Kohlbacher <[email protected]>

** better to read grid computation for sim data

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8817 6adb6e08-d915-0410-9...

7f8abf501d6466080147cd7932d6ffad442ed747 authored about 13 years ago by Chris Bielow <[email protected]>

alternate fix for the TOPPView_test build problem (QT_GUI_LIB included

in source/TEST/CMakeLists.txt), removed windows-style CR/LF in cmake files,
fixed an unused param...

e7937d63eb59bc19bd6098c7827285bf546032be authored about 13 years ago by Oliver Kohlbacher <[email protected]>

** added new headers to TOPPView_test.C

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8814 6adb6e08-d915-0410-9...

7bff207d1f1af25b55c4d292d55f8a9d20b54218 authored about 13 years ago by Chris Bielow <[email protected]>

** added unique IDs to simulated maps

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8813 6adb6e08-d915-0410-9...

cf03979281a8a6df30f536917d2a9d71dfdcf509 authored about 13 years ago by Chris Bielow <[email protected]>

** fixed WSDL test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8811 6adb6e08-d915-0410-9...

9ca2fdfd5995dfdfdcdf2949b05c07668be90ae8 authored about 13 years ago by Chris Bielow <[email protected]>

fixed typoes in FFEval classes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8810 6adb6e08-d915-0410-9...

fd8c568289de25400b7f35605e100abc9cdf7b2d authored about 13 years ago by Stephan Aiche <[email protected]>

fixed a few warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8809 6adb6e08-d915-0410-...

3e6e027e396c56e4b8da885e2b254218a9d33ed9 authored about 13 years ago by Oliver Kohlbacher <[email protected]>

fixed: added missing include for QtTestGui

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8808 6adb6e08-d915-0410-...

3a1cc9f07e3b0f0e0bf9de0980f16c4cedec5a1b authored about 13 years ago by Oliver Kohlbacher <[email protected]>

** added check that TOPP tool writes its correct name to INI section (thx to Bastian)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8807 6adb6e08-d915-0410-9...

d850ff61381fa4d4a44021508138ac30efdd5ae5 authored about 13 years ago by Chris Bielow <[email protected]>

** minor windows bug fixed

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8806 6adb6e08-d915-0410-9...

8fc1cf39bc9de2b96eec141edb60cf34a8412af0 authored about 13 years ago by Chris Bielow <[email protected]>

** build system more structured

** Build system re-organized into sub-modules (started at least)

git-svn-id: https://open-ms.sv...

54d2cb1fbd8db441a10ba299f27ab76f5c743784 authored about 13 years ago by Chris Bielow <[email protected]>

** minor fix

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8804 6adb6e08-d915-0410-9...

b66813e4ce239468110150123acb3bb22f09f8d8 authored about 13 years ago by Chris Bielow <[email protected]>

reset QT required version to 4.5

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8803 6adb6e08-d915-0410-...

be5c019162b013963b163c3108a41185e680ea0e authored about 13 years ago by Oliver Kohlbacher <[email protected]>

added /opt/local /opt /usr/local /usr as default library search paths if CUSTOM_CONTRIB_DIR is

left empty

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8802 6adb6e08...

beddd459369988ab12c22e8657990069744b85b0 authored about 13 years ago by Oliver Kohlbacher <[email protected]>

yet another try... simplified the QT4 component detection

to something more in line with cmake style and conditionally
removed phonon from Darwin build.
H...

7572eccde67d26f50acfaeb0e5c97f0efc184cb1 authored about 13 years ago by Oliver Kohlbacher <[email protected]>

** fixed stupid nnls bug

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8800 6adb6e08-d915-0410-9...

59c023e21436facb321255b445e9839dafa6d4e3 authored about 13 years ago by Chris Bielow <[email protected]>

** fixed weird bug: reading MacOS FASTA files gives empty result! Now we give a warning at least

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8799 6adb6e08-d915-0410-9...

fc604b0ea7f43572641f0086152dcc746c3d2fd5 authored about 13 years ago by Chris Bielow <[email protected]>

** added glpk debug lib to build system

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8798 6adb6e08-d915-0410-9...

518161a5e426229b626862b0f7c60ca6d228471b authored about 13 years ago by Chris Bielow <[email protected]>

fixed some minor stuff in CMakeLists.txt (boost version output format, message format, copy'n'paste error in error message

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8796 6adb6e08-d915-0410-9...

0bb1b852739a6cd9c8478cab1e64ba9de89210ba authored about 13 years ago by Stephan Aiche <[email protected]>

** use dynamic version of boost (link error on linux otherwise)

** some Qt find fixes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@879...

66de52ca2ec892b4a1cfc4d010083990013bb8b3 authored about 13 years ago by Chris Bielow <[email protected]>

** added contrib search path on all systems (otherwise cmake will not find all dependency libs)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8793 6adb6e08-d915-0410-9...

fd740e7bf552a39361570d3c5fd42b577265fa27 authored about 13 years ago by Chris Bielow <[email protected]>

** fixed build system for Windows

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8792 6adb6e08-d915-0410-9...

a46c41f6b11ec444cae691cb8aec0080e30a7958 authored about 13 years ago by Chris Bielow <[email protected]>

changed required libSVM version from 3.1 to 2.91

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8791 6adb6e08-d915-0410-...

b38c5b4e9c9f7a0c31606563108ef4be631eedcb authored about 13 years ago by Oliver Kohlbacher <[email protected]>

modified the buildsystem a bit:

- added cmake macros for boost, libsvm, seqan
- fixed up classes using libsvm to deal with 2....

bd9fc76f8133c99e42536afde17cb5d90019508f authored about 13 years ago by Oliver Kohlbacher <[email protected]>

simplified handling of model parameters

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8788 6adb6e08-d915-0410-9...

fc49598189b7214b0c6c839af9f932e60e04d4d5 authored about 13 years ago by Hendrik Weisser <[email protected]>

addendum to commit 8782

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8787 6adb6e08-d915-0410-9...

4c9339be9a943bc4b96cdf583011e8a0c6c05aa5 authored about 13 years ago by Hendrik Weisser <[email protected]>

* build system now accepts multiple search paths for the contrib libraries

* libsvm now is also build as dynamic library

git-svn-id: https://open-ms.svn.sourceforge.net/s...

db0a4c277b49a0a1af90b47f08c47be1f8e60681 authored about 13 years ago by Stephan Aiche <[email protected]>

removed MapAligner stuff that is no longer needed

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8782 6adb6e08-d915-0410-9...

cdc1808cbd3afa371fce46142cb8847e29c31ce4 authored about 13 years ago by Hendrik Weisser <[email protected]>

created new TOPP tool MapAlignerApplyTransformation for 'MapAligner -type apply_given_trafo', updated tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8781 6adb6e08-d915-0410-9...

e3fbb0a4b69f67e4c3b7fe15e4045864970fd3c9 authored about 13 years ago by Hendrik Weisser <[email protected]>

changed handling of reference and model parameters

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8780 6adb6e08-d915-0410-9...

2e98e736d6b0285d5d5ce67d91ae724f407525bb authored about 13 years ago by Hendrik Weisser <[email protected]>

enable changes for glpk

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8775 6adb6e08-d915-0410-9...

a08bdebf5f8fc1e5dff224cc2e66c36cfe7aef2c authored about 13 years ago by Alexandra Zerck <[email protected]>

renamed ILPWrapper to PSLPFormulation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8774 6adb6e08-d915-0410-9...

58a7ea7880d73e5c3de5373929164043a4b048af authored about 13 years ago by Alexandra Zerck <[email protected]>

added LPWrapper

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8773 6adb6e08-d915-0410-9...

e595d0ffc4e5a252dd50b1101af32d1632871602 authored about 13 years ago by Alexandra Zerck <[email protected]>

** marked DB tools as deprecated

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8765 6adb6e08-d915-0410-9...

8eedaeae3d653e8ccd5b01f4c2ec71c0ca17b021 authored about 13 years ago by Chris Bielow <[email protected]>

** fixed mapstats tool

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8761 6adb6e08-d915-0410-9...

fc68b8d8bd54adca4db5b58d05e291b0235b7b01 authored about 13 years ago by Chris Bielow <[email protected]>

** fixed WSDL text

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8759 6adb6e08-d915-0410-9...

83beb05d37cb95953c1c78ca655949ed6e632628 authored about 13 years ago by Chris Bielow <[email protected]>

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8758 6adb6e08-d915-0410-941f-83917bcadc18

768914c09c544b98913c4a3a896b8ac1db870af8 authored about 13 years ago by Chris Bielow <[email protected]>

** CHANGELOG

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8757 6adb6e08-d915-0410-9...

90d677650d089d84b615eea61af9d69c48c9801d authored about 13 years ago by Chris Bielow <[email protected]>

** fixed docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8756 6adb6e08-d915-0410-9...

35909df82e06930755cb6fbeb55856423219a73f authored about 13 years ago by Chris Bielow <[email protected]>

** fixed tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8755 6adb6e08-d915-0410-9...

664223dece85da5b112bc8b70aa474a9ce80d676 authored about 13 years ago by Chris Bielow <[email protected]>

created new TOPP tool MapAlignerSpectrum for 'MapAligner -type spectrum_alignment', updated tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8750 6adb6e08-d915-0410-9...

97f16aa2534770f2bc0013cc512d6e468eb54b21 authored about 13 years ago by Hendrik Weisser <[email protected]>

docu formatting

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8749 6adb6e08-d915-0410-9...

c2b22895ac8c08a2c92dcb0ed6350c909b28e97d authored about 13 years ago by Hendrik Weisser <[email protected]>

created new TOPP tool MapAlignerPoseClustering for 'MapAligner -type pose_clustering', updated tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8748 6adb6e08-d915-0410-9...

003215a0476293fc259d9d8c5f96067963b71d72 authored about 13 years ago by Hendrik Weisser <[email protected]>

updated warning message

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8747 6adb6e08-d915-0410-9...

e1f58139ecc1e4e620569d2878dc864fc43af6fe authored about 13 years ago by Hendrik Weisser <[email protected]>

small fixes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8745 6adb6e08-d915-0410-9...

4d962a8eaf24cbdaa102ab29c4bd60d11c91b1c7 authored about 13 years ago by Hendrik Weisser <[email protected]>

** prepared build system for GPLK code (just uncomment 2 lines to enable linking)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8743 6adb6e08-d915-0410-9...

e2e67c9db942ab5280f6ba7ae68bf045b7692316 authored about 13 years ago by Chris Bielow <[email protected]>

** fixed [347]

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8742 6adb6e08-d915-0410-9...

c93e5629f4c885c5f2771bda3722af7763b7663f authored about 13 years ago by Chris Bielow <[email protected]>

updated IMS code to avoid conflicts with OpenMS classes; some code clean up and docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8733 6adb6e08-d915-0410-9...

a2894f9b6eef5039a2b18d91ffe202c288d2f793 authored about 13 years ago by Stephan Aiche <[email protected]>

another attempt to fix #342

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8732 6adb6e08-d915-0410-9...

da54382f97c876a51e5fb04ca471870ae6cfc33e authored about 13 years ago by Stephan Aiche <[email protected]>

Fixed TOPPBase_test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8731 6adb6e08-d915-0410...

545b99efca9b7fc930deee970a43e59122ead16b authored about 13 years ago by Johannes Veit <[email protected]>

** fixed some IMS warnings

** code cleanup

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8730 6adb...

7c231a85fb88b068a0592b76679da8d50e596361 authored about 13 years ago by Chris Bielow <[email protected]>

Changed TOPP tool categories

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8729 6adb6e08-d915-0410...

fb7495b1ff656053d6b56e31946aed144da52c6b authored about 13 years ago by Johannes Veit <[email protected]>

fix proposal for #342

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8728 6adb6e08-d915-0410-9...

b68daff091b660b458742b327e64a556c570f660 authored about 13 years ago by Stephan Aiche <[email protected]>

fixed test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8727 6adb6e08-d915-0410-9...

d789f1f3100c637d3150097ef879c1c99593316e authored about 13 years ago by Alexandra Zerck <[email protected]>

created new TOPP tool MapAlignerIdentification for 'MapAligner -type identification', updated tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8725 6adb6e08-d915-0410-9...

75e540fcb316c00660f8face705315807dd6bb7b authored about 13 years ago by Hendrik Weisser <[email protected]>

Slightly changed -write_ctd option (write Toolname.ctd to given directory, remove xsi:... stuff after <PARAMETERS version="1.x">)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8721 6adb6e08-d915-0410...

3c8c26166c8e06355cc27a5677eb87d20d89de6a authored about 13 years ago by Johannes Veit <[email protected]>

consensus position should now be located at the smallest (mz) position

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8720 6adb6e08-d915-0410-9...

4d4708e18c3f27c4677f8d7dcd9ad1ed5ee7be08 authored about 13 years ago by Stephan Aiche <[email protected]>

Added -write_ctd option to TOPPBase.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8719 6adb6e08-d915-0410...

e057264027dbf2801cb7c6769e6a478efc1f0386 authored about 13 years ago by Johannes Veit <[email protected]>

added missing file

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8718 6adb6e08-d915-0410-9...

d2f82f491223bb18df634bd99e48f0e2af6269ad authored about 13 years ago by Timo Sachsenberg <[email protected]>