Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/OpenMS

The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS

cosmetic changes (compliance w/ coding style)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9154 6adb6e08-d915-0410-...

1eda2bb2d6a5da1fd9ccd0b0532438140d76ee57 authored almost 13 years ago by Oliver Kohlbacher <[email protected]>
updated psi cv file psi-ms

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9153 6adb6e08-d915-0410-9...

93f91da5d96db2b17e0dbf6edd39da1765eb5edf authored almost 13 years ago by Mathias Walzer <[email protected]>
changed expect file ending from MzIdentML to mzid

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9152 6adb6e08-d915-0410-9...

9f85eaa30fd7bf79cdeb9e268d3688f7fdcbdbd1 authored almost 13 years ago by Mathias Walzer <[email protected]>
added new schema version (1.1.0) of mzid

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9151 6adb6e08-d915-0410-9...

eebf943427d6c9b04cd24da8e393bd9a7b73f5b4 authored almost 13 years ago by Mathias Walzer <[email protected]>
another fix for the mass range calculation in OfflinePrecursorSelection

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9150 6adb6e08-d915-0410-9...

91cb9a29d3c7ccbc0adad7192f79a4742c4e54f9 authored almost 13 years ago by Alexandra Zerck <[email protected]>
fixed compile error from my last commit

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9149 6adb6e08-d915-0410-9...

6aca93aff0ef5680fcfd7dd53ba2e5916f33b088 authored almost 13 years ago by Alexandra Zerck <[email protected]>
fast MzTabExporter

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9148 6adb6e08-d915-0410-9...

c726055331e55c3f155fc40267d7be786b1b159b authored almost 13 years ago by Timo Sachsenberg <[email protected]>
fixed mass range calculation for OfflinePS

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9147 6adb6e08-d915-0410-9...

efe31306914466058b1a8facd67e3280fa48a873 authored almost 13 years ago by Alexandra Zerck <[email protected]>
slow but nearly complete version of MzTab for idXML

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9146 6adb6e08-d915-0410-9...

45d59d2d05f69508b97395583489a6acc1ac36c8 authored almost 13 years ago by Timo Sachsenberg <[email protected]>
fixed docu issue introduced in [9085]

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9140 6adb6e08-d915-0410-9...

f9fc2d345a629748b700ec3b80d95273c211ba70 authored almost 13 years ago by Stephan Aiche <[email protected]>
fixes for LPWrapper

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9128 6adb6e08-d915-0410-9...

d5e9678016e9a185df1f311d81341727c74cfddf authored almost 13 years ago by Alexandra Zerck <[email protected]>
initial MzTabExporter commit

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9127 6adb6e08-d915-0410-9...

2f659f9f2553dcadb2a3da45173e2fe9dc456475 authored almost 13 years ago by Timo Sachsenberg <[email protected]>
** Simulation: added python script for FASTA file sampling

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9126 6adb6e08-d915-0410-9...

189efbd79dfb69ed0e9a883eece19cdb7a90f298 authored almost 13 years ago by Chris Bielow <[email protected]>
* added scalar division operator to DPosition incl Test

* some minor reformating in FASTAFile_test

git-svn-id: https://open-ms.svn.sourceforge.net/svnr...

6f09be843ad3e92be5d6ebcfd595f533c4d11cd9 authored almost 13 years ago by Stephan Aiche <[email protected]>
** fixed test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9108 6adb6e08-d915-0410-9...

1bf5dce1226df2c881e99b397901470752bc9ab1 authored almost 13 years ago by Chris Bielow <[email protected]>
** fixed two tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9105 6adb6e08-d915-0410-9...

9ad6a499415238adb828d72dc3a99bc921796d60 authored almost 13 years ago by Chris Bielow <[email protected]>
** fixed test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9104 6adb6e08-d915-0410-9...

9a9e86f3a65cf236718b8447dd7bc74208e157f3 authored almost 13 years ago by Chris Bielow <[email protected]>
** fixed bug, preventing building of external project when build dir contains a space

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9103 6adb6e08-d915-0410-9...

909249fe43ab2941697468e8e3811fff38209aec authored almost 13 years ago by Chris Bielow <[email protected]>
** new DC formulation

** some fixes for LPWrapper

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/Open...

35d3f5134c146f526f98a8596d496b72e95354db authored almost 13 years ago by Chris Bielow <[email protected]>
** MassTraceExtractor tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9101 6adb6e08-d915-0410-9...

608bf9692f6c1aad6041aefae2dd9d43016b871b authored almost 13 years ago by Chris Bielow <[email protected]>
** minor fix

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9100 6adb6e08-d915-0410-9...

35eac68601c6f7eec36482ac0e0648d5cb4e4de1 authored almost 13 years ago by Chris Bielow <[email protected]>
MassTraceExtractor fix (filterPeakWidth interface changed)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9099 6adb6e08-d915-0410-9...

f5c8b42382227a33e3ca3f750d0e6af56b05d7fe authored almost 13 years ago by Erhan Kenar <[email protected]>
Yet another FeaFiMetabo changes...

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9098 6adb6e08-d915-0410-9...

b990d0e24c402337c5277074413a6cb2ae7c7e7c authored almost 13 years ago by Erhan Kenar <[email protected]>
fixed test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9096 6adb6e08-d915-0410-9...

f065d691c19fd0d4866f94cc5604fd342856ad90 authored almost 13 years ago by Alexandra Zerck <[email protected]>
** better docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9095 6adb6e08-d915-0410-9...

ad12843278cb0b643a38d166f74690d86640883a authored almost 13 years ago by Chris Bielow <[email protected]>
** fixed bug in INIUpdater.C , preventing update when OpenMS is installed in locations with a space in the directory name

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9094 6adb6e08-d915-0410-9...

6cbadfe61f0852841527464c6389f68a0f878fc6 authored almost 13 years ago by Chris Bielow <[email protected]>
** fixed test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9093 6adb6e08-d915-0410-9...

7737b9119423c4f9a64c563548f144d546856749 authored almost 13 years ago by Chris Bielow <[email protected]>
** added more meta values to DC process

** changed meaning of max_mass_diff in DC parameters

git-svn-id: https://open-ms.svn.sourceforge...

bea7f14d811c97a877b6117f52f3ba395fe7570c authored almost 13 years ago by Chris Bielow <[email protected]>
** added MetaValue filtering to FileFilter

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9090 6adb6e08-d915-0410-9...

575d94ff5cedf546ad65ba3ca20dc468f41e8984 authored almost 13 years ago by Chris Bielow <[email protected]>
** fixed typo

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9089 6adb6e08-d915-0410-9...

bcd79be53e9213093a55e35c527c3e7c54b6252c authored almost 13 years ago by Chris Bielow <[email protected]>
implemented Weights_test #341

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9088 6adb6e08-d915-0410-9...

46e9a7ccffe1976ff544d54d4ef4cb4280cb531f authored almost 13 years ago by Stephan Aiche <[email protected]>
added to CHANGELOG

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9086 6adb6e08-d915-0410-9...

1461f1a1569b5af6cdf374b3645f36c0cb54c0b9 authored almost 13 years ago by Timo Sachsenberg <[email protected]>
removed deprecated tool IDDecoyProbability

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9085 6adb6e08-d915-0410-9...

2cbeb79a0b788f3e200f4b69135548a1f685e8b5 authored almost 13 years ago by Timo Sachsenberg <[email protected]>
removed type comment

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9084 6adb6e08-d915-0410-9...

32bb88a717bd6d885199c8ac84ba60706a1edb81 authored almost 13 years ago by Timo Sachsenberg <[email protected]>
** added charge to consensusFeature display in TOPPView

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9083 6adb6e08-d915-0410-9...

47bf4a856c65eb0a98bffc6815d6a46e6537c3e7 authored almost 13 years ago by Chris Bielow <[email protected]>
** fixed test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9081 6adb6e08-d915-0410-9...

0b9979ea61527adfe507ecf306ee54ebb0f721ea authored almost 13 years ago by Chris Bielow <[email protected]>
** fixed epd MassTrace limitation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9080 6adb6e08-d915-0410-9...

1344b34a56d2fd4e4adfcaa1461601c43ea81b9f authored almost 13 years ago by Chris Bielow <[email protected]>
** fixes for MassTrace segfault

** not writing size0 mass traces (as this fails)
** switch to disable elution profile fitting (th...

c4cf0e4098f58d0ea9bd392da89055ad15379ceb authored almost 13 years ago by Chris Bielow <[email protected]>
** fixed COin-OR <-> GLPK behaviour

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9077 6adb6e08-d915-0410-9...

a9e442a94339fe7fc3cd3a1eb51c9e0c71b19f8d authored almost 13 years ago by Chris Bielow <[email protected]>
fixed typo (">>" instead of "> >") that kept the code from compiling with gcc 4.2

and a few cosmetic changes related to the coding style

git-svn-id: https://open-ms.svn.sourcefo...

17b3be11d96fce9fb22dba36ee86df4b66d5baf4 authored almost 13 years ago by Oliver Kohlbacher <[email protected]>
** fixed ILPDCWrapper bug

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9075 6adb6e08-d915-0410-9...

01e396891e309f8384571afde657158816460517 authored almost 13 years ago by Chris Bielow <[email protected]>
** fixed TOPPAS types for iTRAQ

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9074 6adb6e08-d915-0410-9...

0cb4d9694b4dcb432db2c8b74244da8c8578ce91 authored almost 13 years ago by Chris Bielow <[email protected]>
** fixed hide/show button for TOPPAS downloads with IE on website

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9072 6adb6e08-d915-0410-9...

964875b577eeb2c09f0a16832c6f9e39329f5d37 authored almost 13 years ago by Chris Bielow <[email protected]>
adapted the build system to SEQAN 1.3.1

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9071 6adb6e08-d915-0410-...

f8da088c41550cd2be1ac13e163cb889c2dd6d3d authored almost 13 years ago by Oliver Kohlbacher <[email protected]>
** fixed checker error

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9069 6adb6e08-d915-0410-9...

4a297ca39b05e6496e4d059859c079ce05e5c4e6 authored almost 13 years ago by Chris Bielow <[email protected]>
** fixed two tests

** fixed checker error

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@90...

69624f79a28ef715bb85aae904177dd94b702a22 authored almost 13 years ago by Chris Bielow <[email protected]>
fixed bug that caused the failing of a FileMerger test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9067 6adb6e08-d915-0410-9...

a0478ee50f956c83cf39a482154d43351eb320fa authored almost 13 years ago by Immanuel Luhn <[email protected]>
minor changes to FeaFiMetabo

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9066 6adb6e08-d915-0410-9...

94cbc1e1cb6f7f426e22e3e10cb208b2b39b8f43 authored almost 13 years ago by Erhan Kenar <[email protected]>
** added int & double lists for ConsensusXML and FeatureXML

** new schemata for FeatureXML and ConsensusXML
** thx to Marc M. for contributing most of the ac...

7a5d81d0f98fff8ede168c23a2e6437f425c3518 authored almost 13 years ago by Chris Bielow <[email protected]>
corrected a comment

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9064 6adb6e08-d915-0410-9...

fca48701e7cba79af99433d6591386b3f5c42a4f authored almost 13 years ago by Hendrik Weisser <[email protected]>
** fixed warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9062 6adb6e08-d915-0410-9...

9f98080aa80dafbaf62a99e382322b53d5c08639 authored almost 13 years ago by Chris Bielow <[email protected]>
** fixed test scaffold

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9061 6adb6e08-d915-0410-9...

31b2a68131e1845c9b09342011cc7e927a56feee authored almost 13 years ago by Chris Bielow <[email protected]>
** fixed ConsensusMap test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9060 6adb6e08-d915-0410-9...

c53454d286e36a1cb5decf974c1973ef5bee7d64 authored almost 13 years ago by Chris Bielow <[email protected]>
** added missing tests

** minor fixes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9059 6adb6...

3146e7ceb4424aedd75fbbabd8010efb0020ebb0 authored almost 13 years ago by Chris Bielow <[email protected]>
** added INIUpdater tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9058 6adb6e08-d915-0410-9...

acd458ecc9350ee4da83fa80187bc6ce41fe5343 authored almost 13 years ago by Chris Bielow <[email protected]>
Hopefully fixed test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9057 6adb6e08-d915-0410-9...

184de4f2a9cc47e67ff12ca47f8302be68f2b4c8 authored almost 13 years ago by Alexandra Zerck <[email protected]>
added working IMSAlphabetParser tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9055 6adb6e08-d915-0410-9...

e2aa3956793848e61c1e726e83d190c0db533c36 authored almost 13 years ago by Stephan Aiche <[email protected]>
addition to last commmit

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9054 6adb6e08-d915-0410-9...

9e87caf99c6697198a0c3232063a97d22f3e07f7 authored almost 13 years ago by Alexandra Zerck <[email protected]>
change of parameters

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9053 6adb6e08-d915-0410-9...

715d9ad7dd7671df0840351f0c97b5bd1319e038 authored almost 13 years ago by Sandro Andreotti <[email protected]>
LPWrapper fixes from precursor selection branch

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9052 6adb6e08-d915-0410-9...

21a45b7ab6158a962f4b7cb2353309459771865f authored almost 13 years ago by Alexandra Zerck <[email protected]>
FeaFi fixes on RT scoring

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9051 6adb6e08-d915-0410-9...

40801955cf0f134e7e83ef78c68c452039212cb3 authored almost 13 years ago by Erhan Kenar <[email protected]>
FeaFi fixes on RT scoring

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9047 6adb6e08-d915-0410-9...

1237928d65484c43d0b7d49df61efe35ed56e44a authored almost 13 years ago by Erhan Kenar <[email protected]>
removed currently unused parameter

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9045 6adb6e08-d915-0410-9...

531e782da29c4797cb2d73feff618e2695d9be81 authored almost 13 years ago by Alexandra Zerck <[email protected]>
Added the functionality to merge ConsensusXML files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9034 6adb6e08-d915-0410-9...

52704d6310fa7fec2894f79e837e70f6a6b2d96f authored about 13 years ago by Immanuel Luhn <[email protected]>
added the += operator

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9033 6adb6e08-d915-0410-9...

320a12bb04a30689cb9d0fba1630448dd02a787a authored about 13 years ago by Immanuel Luhn <[email protected]>
removed type ComboBox from TOPPView

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9029 6adb6e08-d915-0410-9...

2f33d421f6ca8aec3ecc7d9e4b87b14e488ec48e authored about 13 years ago by Timo Sachsenberg <[email protected]>
** TOPPAS update file issue fixed

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9027 6adb6e08-d915-0410-9...

1379838b70f55975255d4f20fa031851d6ac3613 authored about 13 years ago by Chris Bielow <[email protected]>
** small fix

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9026 6adb6e08-d915-0410-9...

624a73050e00aa8b6767379f9345c8cf93636e47 authored about 13 years ago by Chris Bielow <[email protected]>
made ppm checkbox not checkable (better reflects the current capabilities of the spectrum alignment)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9025 6adb6e08-d915-0410-9...

2febd12b52d3ad67c9da93326ee0c757748a5d45 authored about 13 years ago by Timo Sachsenberg <[email protected]>
** fixed DLL linkage errors in IMS code

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9024 6adb6e08-d915-0410-9...

0d2284a33709052c711add9f2b45aa5421077ad4 authored about 13 years ago by Chris Bielow <[email protected]>
addendum to #360; correct loading of files was broken due to the type removal

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9023 6adb6e08-d915-0410-9...

cb104a3aa043e01685d58818bdd33cdbf512061b authored about 13 years ago by Stephan Aiche <[email protected]>
** fixed double output in TOPPAS log window

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9021 6adb6e08-d915-0410-9...

dc2d1144cba64690e6ee90c33d23d7c19c6136f2 authored about 13 years ago by Chris Bielow <[email protected]>
** updated TOPPAS workflows in EXAMPLES

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9020 6adb6e08-d915-0410-9...

c058e330bf67900905c5f96b922e05567109273c authored about 13 years ago by Chris Bielow <[email protected]>
fixed warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9018 6adb6e08-d915-0410-9...

bc27f2efcee555400ec3f243c1c2181a8355ae90 authored about 13 years ago by Alexandra Zerck <[email protected]>
Fixed #362 by adding breakpoints to TOPPAS workflows

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9017 6adb6e08-d915-0410...

ee18d2035cc8dd1eda83286126d2292ccd06eb07 authored about 13 years ago by Johannes Veit <[email protected]>
added functionality and completed test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9016 6adb6e08-d915-0410-9...

9ee49d34e5b438b1354f7b29156baebb5fec8fa3 authored about 13 years ago by Alexandra Zerck <[email protected]>
some test updates and coding convention fixes #checker

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9015 6adb6e08-d915-0410-9...

272da91e4b118ea4a10adaf7b453950b3e549731 authored about 13 years ago by Stephan Aiche <[email protected]>
moved compose function adapters to CONCEPT

added tests and documentation
#341, #checker

git-svn-id: https://open-ms.svn.sourceforge.net/svn...

4092ed6de18bb660e219a6b7a521a46c2b26ce42 authored about 13 years ago by Stephan Aiche <[email protected]>
fixed segfault in IMS Decomposer tests #341

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9012 6adb6e08-d915-0410-9...

0a664ed6661b5e7b872c746ecb6f864b3db68878 authored about 13 years ago by Stephan Aiche <[email protected]>
** TOPPAS can now convert old TOPPAS files itself

** fixed a warning

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9010 6...

818b3b12b09ab9956894221238eecb9e2eed66f5 authored about 13 years ago by Chris Bielow <[email protected]>
FeatureFinderRaw, SILACAnalyzer: Cleanup peak width usage for clustering

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9009 6adb6e08-d915-0410-...

97f0c2df6e46c1e95faaa2684815fd94201d237f authored about 13 years ago by Bastian Blank <[email protected]>
fixed issue #366 by adjusting all channels to have the shape parameters of the unlabeled channel

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9008 6adb6e08-d915-0410-9...

d8901a1e167dff23356f05c31ff853c84c0c296a authored about 13 years ago by Stephan Aiche <[email protected]>
SILACFiltering: Get peak width info from caller

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9007 6adb6e08-d915-0410-...

6f76ee924816196b92fe839ebb9a842611cded3a authored about 13 years ago by Bastian Blank <[email protected]>
FeatureFinderRaw, SILACAnalyzer: Add peak width estimation, properly handle errors

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9006 6adb6e08-d915-0410-...

72cad0b12969000d4eeeadeb13137916920312b8 authored about 13 years ago by Bastian Blank <[email protected]>
Expect TOPP_SILACAnalyzer_2 test to fail, don't check output data

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9005 6adb6e08-d915-0410-...

c8555151541a135447569806a34853de70708fa6 authored about 13 years ago by Bastian Blank <[email protected]>
fix for #365

* introduced upper limit for sigma (tau already had one)
* both parameters are resampled if the...

4201fea9eb01c786ba287a0a7ee15e65201e907b authored about 13 years ago by Stephan Aiche <[email protected]>
SILACAnalyzer: Always read input file (needed for peak width estimation)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9003 6adb6e08-d915-0410-...

e6cca4cbc5edf886533d4692a4cdb5c54761e20c authored about 13 years ago by Bastian Blank <[email protected]>
** force download of TOPPAS files from homepage

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9002 6adb6e08-d915-0410-9...

fc775bce09363474f8acdc83a40762b3465c1f9f authored about 13 years ago by Chris Bielow <[email protected]>
fixed some issues in SequestInfile and the corresponding test #checker

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9000 6adb6e08-d915-0410-9...

82a9fbbe2392cd2341b84765b63e7abcc535b511 authored about 13 years ago by Stephan Aiche <[email protected]>
TICResampling class removed

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8994 6adb6e08-d915-0410-9...

77a6951971796789867d9fd6338d0b3c84a29808 authored about 13 years ago by Erhan Kenar <[email protected]>
TICResampling class removed

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8993 6adb6e08-d915-0410-9...

03e9e0398934619ec268402e09bb0f7df6063c3d authored about 13 years ago by Erhan Kenar <[email protected]>
added TICResampling files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8990 6adb6e08-d915-0410-9...

2787bc0e30da9a3dcee1bbd129fce28d4e4e9817 authored about 13 years ago by Erhan Kenar <[email protected]>
FeaFiMetabo & MassTraceExtractor updates

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8989 6adb6e08-d915-0410-9...

c1f1f87ca3960e733b9784eb4e268ae4ea6fd216 authored about 13 years ago by Erhan Kenar <[email protected]>
added missing typename [8981], #341

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8988 6adb6e08-d915-0410-9...

457d735a161f80c2537a791e3252d933089ad023 authored about 13 years ago by Stephan Aiche <[email protected]>
added SimTypes.h to checker ignore list, since it is not a class but a header for general definitions and typedefs #checker

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8987 6adb6e08-d915-0410-9...

d68c6ae035cbeaad6919755e27e00ca060d0a98e authored about 13 years ago by Stephan Aiche <[email protected]>
yet another PeakPickerHiRes fix... switch on/off SNT estimation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8986 6adb6e08-d915-0410-9...

e500a5868eba41f5276975c9a3e874a98c20f7d7 authored about 13 years ago by Erhan Kenar <[email protected]>
yet another PeakPickerHiRes fix... switch on/off SNT estimation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8984 6adb6e08-d915-0410-9...

8d05b49f9b6e00d6e8069634fcc5eaef6a2837e8 authored about 13 years ago by Erhan Kenar <[email protected]>
FeatureFinderRaw, SILACAnalyzer: Set minimum intensity cutoff to 0. It is only used to compare values

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8983 6adb6e08-d915-0410-...

02a5b70fb5e1edf4a5dd0cdacedbc69ac08f85da authored about 13 years ago by Bastian Blank <[email protected]>
SILACFilter: Fix algorithm in averagine filter, remove second averagine filter use

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8982 6adb6e08-d915-0410-...

9b14e87a07d100b804c846f3698b4367b85e0ae7 authored about 13 years ago by Bastian Blank <[email protected]>
** fixed two warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@8981 6adb6e08-d915-0410-9...

346b54dee0e42426eb98bbf25000a5ff2ef9bd17 authored about 13 years ago by Chris Bielow <[email protected]>