Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/OpenMS

The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS

fixed MzMLFile and test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9291 6adb6e0...

d8c57bf04a52f2712059321a52927ac8cab0f376 authored almost 13 years ago by Mathias Walzer <[email protected]>
patched CV! remark: OpenMS-patch for wrong entries MS:1001881 MS:1001092 - to be replaced as soon as new CV with corrections is released

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9290 6adb6e0...

0ec608d0c8e4e91e51c402213be2ae7c1ea3fa3c authored almost 13 years ago by Mathias Walzer <[email protected]>
fixed File_test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9289 6adb6e0...

9b66c13adb95cf26602429f0aaf8b5f9ebf33e95 authored almost 13 years ago by Mathias Walzer <[email protected]>
fixed GzipIfstream_test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9288 6adb6e0...

529abf4f8441a57cb166e774c85187132734ad49 authored almost 13 years ago by Mathias Walzer <[email protected]>
Fixed PeakPickerHiRes TOPP tool evocation test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9287 6adb6e0...

bacb801346d783a5c8aa1dfa6cc4d78e32ae2178 authored almost 13 years ago by Erhan Kenar <[email protected]>
Added new mzML files for PeakPickerHiRes_test, removing old mzData ones

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9286 6adb6e0...

96af837e54718f298f5e4462bc80d080980f614c authored almost 13 years ago by Erhan Kenar <[email protected]>
Fixed PeakPickerHiRes_test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9285 6adb6e0...

8394755457911b2b2fd82ad5a60830f1660de0e8 authored almost 13 years ago by Erhan Kenar <[email protected]>
removed unused variable warning

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9284 6adb6e0...

854d6c4a3f71dc052ada1bb64ae36e78133e2c5d authored almost 13 years ago by Timo Sachsenberg <[email protected]>
PeakPickerHiRes segfault fix

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9283 6adb6e0...

6432708221e248c55fa29bfab2550291344d9620 authored almost 13 years ago by Erhan Kenar <[email protected]>
fixed TextExporter segfault problem of simulator generated consensusXML files; still TextExporter accesses a map unchecked

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9282 6adb6e0...

bcac175f120f57c33d586fa0dfdf60e9a5642414 authored almost 13 years ago by Stephan Aiche <[email protected]>
Rewriting some MassTrace kernel stuff & writing some documentation.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9281 6adb6e0...

f7ed8bb1670d2a800bcd08c52e6af1978a7ae1ac authored almost 13 years ago by Erhan Kenar <[email protected]>
fixed the broken export of convex hulls

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9280 6adb6e...

fd1e2e7788dc9c9689a7e7002a808dcc3c3fdf80 authored almost 13 years ago by Oliver Kohlbacher <[email protected]>
** changed simulator sampling - should be stable now

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9279 6adb6e0...

4f436ee80ebbf7fabe1f3d6e052c5ae72836d580 authored almost 13 years ago by Chris Bielow <[email protected]>
** minor

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9278 6adb6e0...

999b7e0843b18e66ad60bfb30c9dc8a1c3ff38d1 authored almost 13 years ago by Chris Bielow <[email protected]>
removed compilation warning

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9277 6adb6e...

4b62a7459ffb13607c8311a2592ce7ac4d702cd0 authored almost 13 years ago by Timo Sachsenberg <[email protected]>
fixed FeatureFinderRaw parameter error

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9276 6adb6e0...

0197c5be8bf8323fa1e7cbb79217d24058370942 authored almost 13 years ago by Timo Sachsenberg <[email protected]>
fixed FeatureFinderRaw error

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9275 6adb6e0...

9ed99e34f1ffdc479199fe266f900269a65e9fac authored almost 13 years ago by Timo Sachsenberg <[email protected]>
LPWrapper_test: Adopt string->enum changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9274 6adb6e...

0397127618b9f5d9c7a7e684452c2b32f68fb26c authored almost 13 years ago by Bastian Blank <[email protected]>
** some improvements to LPWrapper

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9273 6adb6e0...

da53ad45dd5c44b19dded7130584302a883318c9 authored almost 13 years ago by Chris Bielow <[email protected]>
** more itraq docu

** made 4plex the default

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branch...

42c1a5cafac74d41d4ab1483e509fd62bbc801c6 authored almost 13 years ago by Chris Bielow <[email protected]>
updated some tool names in th documentation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9271 6adb6e0...

297f0fb5d0df3107194fb7165079e09e99a50712 authored almost 13 years ago by Timo Sachsenberg <[email protected]>
removed dead link to IDDecoyProbability

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9270 6adb6e0...

5aeb1f626ac2d23f248a77ed65e8d251c2564464 authored almost 13 years ago by Hendrik Weisser <[email protected]>
updated changelog

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9269 6adb6e0...

0d5a9d366d63be2c225f0a4de78d96cea52ed508 authored almost 13 years ago by Hendrik Weisser <[email protected]>
SILACAnalyzer: Set max spacing parameter higher

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9268 6adb6e...

0788f1b5f398c5f0644c550bd43f59fadd410cd5 authored almost 13 years ago by Bastian Blank <[email protected]>
SILACClustering: Don't use ::abs (integer only) on floating point data

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9267 6adb6e...

c958d2c1a99007ba4862b8b7e18bb0c916bcb734 authored almost 13 years ago by Bastian Blank <[email protected]>
fixed test case

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9266 6adb6e0...

36e97ec39adfa252932ca53a738cf8781e78913f authored almost 13 years ago by Hendrik Weisser <[email protected]>
some minor improvements to ProteinQuantifier exported idXML

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9265 6adb6e0...

19616f7a912a25c0ee031b986bcdce5fbd802c09 authored almost 13 years ago by Timo Sachsenberg <[email protected]>
fixed a few cosmetic details

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9263 6adb6e...

7b2503d9f0f8366fef2d4a76bd138d2efc45de3a authored almost 13 years ago by Oliver Kohlbacher <[email protected]>
Added: functionality to expand a convex hull to its

bounding box (and thus reduce the number of hull points)
in ConvexHull2D

Changed: FeatureFinderC...

a0a5d4cacc079fd5f1d9fef3b4b0efaf903c86fe authored almost 13 years ago by Oliver Kohlbacher <[email protected]>
better mzTab 0.7 compatibility for ProteinQuantifier result

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9261 6adb6e0...

7d7e45415915ae8eea2821bd58342d546e34b9b6 authored almost 13 years ago by Timo Sachsenberg <[email protected]>
Revert r9258

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9259 6adb6e08-d915-0410-...

03ee7a33d575ea5bb64bf4cbf6524089243edb52 authored almost 13 years ago by Bastian Blank <[email protected]>
SILACClustering: Don't use std::abs (integer only) on floating point data

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9258 6adb6e08-d915-0410-...

c7835781d23494cc3eff1eec4cb1ebdd439e961a authored almost 13 years ago by Bastian Blank <[email protected]>
#264: fixed crash with minimal input

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9256 6adb6e0...

574ef6ae399936a9560b7d9ac706750cb3674e0d authored almost 13 years ago by Alexandra Zerck <[email protected]>
PeptideAndProteinQuant: fixed minor bug (counting of quantified peptides), added tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9255 6adb6e0...

0407fc656d1622be59884047388db7c3d86598f8 authored almost 13 years ago by Hendrik Weisser <[email protected]>
removed debug output, added parameter listing to docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9254 6adb6e0...

9a3f80d0cdf81c93935fe9be9dc1c8aa9b3a7fa9 authored almost 13 years ago by Hendrik Weisser <[email protected]>
remove unneeded data from feature maps after loading

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9253 6adb6e0...

a05980257a4e0ab6d1bb30081bd82d19294b2b6d authored almost 13 years ago by Hendrik Weisser <[email protected]>
#322: write MetaDataArrays containing peak information after PeakPicking only if explicitly wanted

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9250 6adb6e0...

428bbba3fc11fde1814566fbe76f9bab2541745a authored almost 13 years ago by Alexandra Zerck <[email protected]>
PeakWidthEstimator_test: Update number of found peaks, make output comparision more tolerant

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9248 6adb6e...

4d3abe3b2057c5bbcfd75ca360b7605930508dc4 authored almost 13 years ago by Bastian Blank <[email protected]>
SILACFilter: Again use only one isotope distribution cache

This fixes a serious slowdown during filter initialization

git-svn-id: https://open-ms.svn.sou...

12ebc74290b1aa7c8795b3e9ffeefe1355f3fb03 authored almost 13 years ago by Bastian Blank <[email protected]>
solved issue with documenting model parameters; moved base class to header directory

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9246 6adb6e0...

542b6504958efecc2cf63b9bed816169a1c4872c authored almost 13 years ago by Hendrik Weisser <[email protected]>
** fixed INIUpdater tests (bug introduced in [9242])

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9245 6adb6e0...

7edc784c8458acffac140d98b717d6b82584033d authored almost 13 years ago by Chris Bielow <[email protected]>
#372:

* fixed computeRank() and rankCorrelationCoefficient() in StatisticFunctions.h
* fixed tests

g...

89f6d80e076c9ba11ff6f10a8447b286ae38cbfe authored almost 13 years ago by Johannes Veit <[email protected]>
improved documentation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9243 6adb6e0...

1993717ea615e7248738dea532440de575a7a6bb authored almost 13 years ago by Hendrik Weisser <[email protected]>
updated formating and documentation of FF_centroided code

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9242 6adb6e0...

e84d2fdfd52fa7758b57762ea23d423f5c4282d6 authored almost 13 years ago by Stephan Aiche <[email protected]>
nicer output

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9241 6adb6e0...

0166aeeebf514d61b3507bf3f51ca7f4752898d4 authored almost 13 years ago by Timo Sachsenberg <[email protected]>
removed some unused variable warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9240 6adb6e0...

d250ddeddeafccf74ca8d094ad3452dba466d8f1 authored almost 13 years ago by Timo Sachsenberg <[email protected]>
more verbose output for idXML

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9239 6adb6e...

6b6110554322ad80b2875e20a0fb7f0ed2bc0845 authored almost 13 years ago by Timo Sachsenberg <[email protected]>
keep track of all identified peptides/proteins for mzTab export; fixed issue with counting unquantified proteins

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9238 6adb6e0...

7345e0c4dda488a1044f57968abb78c621580a4d authored almost 13 years ago by Hendrik Weisser <[email protected]>
speed up for idXML

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9237 6adb6e0...

0a45fbfc34a65ff5eac2bebe6a854c8cd5d284e8 authored almost 13 years ago by Timo Sachsenberg <[email protected]>
** fixed INIUpdater_3_old_out.toppas

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9236 6adb6e0...

e9db08f635eac1f537bdc1707c5ac8104a931d65 authored almost 13 years ago by Chris Bielow <[email protected]>
** fixed TEST/TOPP/INIUpdater_1_noupdate.toppas

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9235 6adb6e0...

8570252fed8f86864db4ad8567b72420daf73df0 authored almost 13 years ago by Chris Bielow <[email protected]>
removed 2 compile warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9234 6adb6e0...

53b4cb1f11495913efd905f86bcddaefa4862660 authored almost 13 years ago by Timo Sachsenberg <[email protected]>
small improvement

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9233 6adb6e0...

614b40565e04bc527d11d9d5359753ad5e544cdd authored almost 13 years ago by Hendrik Weisser <[email protected]>
updated FeatureLinker names in documentation (tickets 348 and 368)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9232 6adb6e0...

8f718013cf22a8b38eda3b1fff72dc5350ea124f authored almost 13 years ago by Hendrik Weisser <[email protected]>
updated MapAligner names in documentation (tickets 348 and 368)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9231 6adb6e0...

6519a87edbc1a14e552de5b41f1ef2f12c34af44 authored almost 13 years ago by Hendrik Weisser <[email protected]>
write coverage (currently commented out)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9230 6adb6e0...

d132cb01c8005d809256c586e09398898735475a authored almost 13 years ago by Hendrik Weisser <[email protected]>
renamed MapAlignerApplyTransformation to MapRTTransformer

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9229 6adb6e0...

c0d511276eb481016e24d32609adb5ee8d34f1b9 authored almost 13 years ago by Hendrik Weisser <[email protected]>
more support for mzTab, added test for idXML/mzTab output

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9228 6adb6e0...

51c6cb7a9598e0537906a432597b13998b002e24 authored almost 13 years ago by Hendrik Weisser <[email protected]>
updated license information for upcoming release

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9226 6adb6e0...

d761f593cfb31978b5b48a3293b00216bcf5cd62 authored almost 13 years ago by Stephan Aiche <[email protected]>
Created Branch 1.9

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9225 6adb6...

9a087c347cdda19439c83c31c2ccba2e42b5f1c9 authored almost 13 years ago by Chris Bielow <[email protected]>
T* vector<T>::data() is not implemented in VS versions below 10, replaced with &v.front()

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9223 6adb6e08-d915-0410-9...

216f6eec9c6f76474ac757805353a18aaff9b19b authored almost 13 years ago by Stephan Aiche <[email protected]>
another attempt to fix the native id problem

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9222 6adb6e08-d915-0410-9...

d2734acb50118239a38c2b51d00a4cd54d7e8d15 authored almost 13 years ago by Stephan Aiche <[email protected]>
fixed parameter subsection checking

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9221 6adb6e08-d915-0410-9...

d2c7f090947f2c73cb3c2326540accaf9ca65d76 authored almost 13 years ago by Hendrik Weisser <[email protected]>
implemented simple fix to reindex the simulated spectra

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9220 6adb6e08-d915-0410-9...

ff6a8d56c6f8338c60835baf57589dffcb6ff6d5 authored almost 13 years ago by Stephan Aiche <[email protected]>
this should fix at least the windows compilations errors from last night

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9219 6adb6e08-d915-0410-9...

122c7a1f5aefa0769339f97cce8bd04122e98dbb authored almost 13 years ago by Stephan Aiche <[email protected]>
fixed ticket 376 ('Command line parser does not recognize --help and --helphelp')

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9218 6adb6e08-d915-0410-9...

e43395767e85aeffe409fd0684a7c72be0232b5b authored almost 13 years ago by Hendrik Weisser <[email protected]>
made -write_ctd an advanced parameter

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9217 6adb6e08-d915-0410...

2f61a222c9bcaadb67f032902c0404f873824639 authored almost 13 years ago by Johannes Veit <[email protected]>
ProteinQuantifier: moved quant. code to dedicated class, started support for mzTab (unfinished)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9216 6adb6e08-d915-0410-9...

505dea89af8eaee1e983a2d21e84e53f47140f70 authored almost 13 years ago by Hendrik Weisser <[email protected]>
fixed doxygen formatting

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9215 6adb6e08-d915-0410-9...

859f7df706f56682fdc25d108a87333f36403d7f authored almost 13 years ago by Hendrik Weisser <[email protected]>
Merge SILACAnalyzer branch

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9214 6adb6e08-d915-0410-...

eeffc0374f774651406b0f7d1aff2480d4491e03 authored almost 13 years ago by Bastian Blank <[email protected]>
TOPPAS: made ScrollHandDrag (panning) the default mode (instead of RubberBandDrag selection)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9210 6adb6e08-d915-0410...

d1921eba8df753e4dcfe4c14fa4ff79e4a2a6d9d authored almost 13 years ago by Johannes Veit <[email protected]>
FINALLY found&fixed this zooming bug (workflows jumping around when zooming in for first time)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9209 6adb6e08-d915-0410...

6cfbc92ae99f9963feb3b3749a783452284c9bfa authored almost 13 years ago by Johannes Veit <[email protected]>
fixed bug which made workflows "jump around" when switching between tabs

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9208 6adb6e08-d915-0410...

02d3d2bebfe091b47e39d69809c12a7a97a15174 authored almost 13 years ago by Johannes Veit <[email protected]>
FeaFiMetabo changes (feat scoring function)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9201 6adb6e08-d915-0410-9...

938670a9b793c052d6c70bfffc2557179755c0e6 authored almost 13 years ago by Erhan Kenar <[email protected]>
implemented IMSElement test #341

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9199 6adb6e08-d915-0410-9...

dbb62590daacb377d648fbab4f9f1fd8f3de211e authored almost 13 years ago by Stephan Aiche <[email protected]>
** fixed MzIdentMLHandler compile errors

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9198 6adb6e08-d915-0410-9...

8df852a1817e42fe3618f66b79c70aa1d911186b authored almost 13 years ago by Chris Bielow <[email protected]>
added functionality to turn Param objects into command line parameters, added new command line parser

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9196 6adb6e08-d915-0410-9...

2c8ac5b85784abea912a7c5e21112d5fd4fe8b1a authored almost 13 years ago by Hendrik Weisser <[email protected]>
mzid unimod residuemodification fix - our validator validates

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9195 6adb6e08-d915-0410-9...

7a678adb189b46d4e93722c0002ebaf6999b4e1c authored almost 13 years ago by Mathias Walzer <[email protected]>
mzid residuemodification fix - xmlspy validates

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9194 6adb6e08-d915-0410-9...

b68c281c8a9dc54050bdbf86bf477436b57cd22e authored almost 13 years ago by Mathias Walzer <[email protected]>
** fixed sim:ionization issue when abundance is too high

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9193 6adb6e08-d915-0410-9...

7c530e58eb221d0bfb54feb08f209ec3be4aef5e authored almost 13 years ago by Chris Bielow <[email protected]>
followup on rev9191 added MzIdentMLFile header file methods

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9192 6adb6e08-d915-0410-9...

28001a17fe84b05353dc72c2f192e700774546a9 authored almost 13 years ago by Mathias Walzer <[email protected]>
added mzid write support and base for more elaborate CV usage (validation and comfortable (given) version conform write)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9191 6adb6e08-d915-0410-9...

56b0039f827fc9aed71bff61b1ff9a89fe82ebea authored almost 13 years ago by Mathias Walzer <[email protected]>
** fixed test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9190 6adb6e08-d915-0410-9...

bc5a0c30039c285f9c48240e66216ba4ad695cee authored almost 13 years ago by Chris Bielow <[email protected]>
** fixed test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9189 6adb6e08-d915-0410-9...

0bc2721871457924f06f908d7837ce9d0dbc308a authored almost 13 years ago by Chris Bielow <[email protected]>
** more descriptive params for simulation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9177 6adb6e08-d915-0410-9...

e4cfd5997332324cf6c3d0d5bc209e1f16758400 authored almost 13 years ago by Chris Bielow <[email protected]>
removed the graphics effects stuff again, incorrect commit

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9176 6adb6e08-d915-0410-...

d4f423df3bd994d994c96a14c5ae981aa7fe7931 authored almost 13 years ago by Oliver Kohlbacher <[email protected]>
some featureXML support in mzTab

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9175 6adb6e08-d915-0410-9...

a021b4a75729592201e1470f964c9b96ca4dc73a authored almost 13 years ago by Timo Sachsenberg <[email protected]>
** fixed compile error of MzTabExporter.C

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9174 6adb6e08-d915-0410-9...

87302adc730b0dc359d86785ad39e468551a606a authored almost 13 years ago by Chris Bielow <[email protected]>
** fixed BAD FeatureFinder bug (wrong algorithm called due to -type splitting)

** removed -seeds param from FF's who do not support it

git-svn-id: https://open-ms.svn.sourcefo...

fd5134e0592f4f8b21653dba09355cf2c69c7a53 authored almost 13 years ago by Chris Bielow <[email protected]>
** LPWrapper using Int's instead of Size now - avoiding useless conversion

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9172 6adb6e08-d915-0410-9...

b95fe7d58bbadcad94bd69c6f6b4ddad538943de authored almost 13 years ago by Chris Bielow <[email protected]>
added a comment

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9171 6adb6e08-d915-0410-9...

0b1a5f655e171c31d03d05ba8aa1ea1b242e70dc authored almost 13 years ago by Hendrik Weisser <[email protected]>
added sum/mean/median, fixed formatting

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9170 6adb6e08-d915-0410-9...

462dc14bc96fba7dec0e18ad6a6bd584c292afd3 authored almost 13 years ago by Hendrik Weisser <[email protected]>
* updated docu for IMSAlphabet

* implemented IMSAlphabet_test #341

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/ope...

d32580b2ab08fb8baeff414511b996c86047c1b9 authored almost 13 years ago by Stephan Aiche <[email protected]>
added test -- checker

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9164 6adb6e08-d915-0410-9...

ddbd198adf4582dadc1e698ab28123488b4bc25f authored almost 13 years ago by Sandro Andreotti <[email protected]>
checker stuff

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9163 6adb6e08-d915-0410-9...

b37d1c3c7c83be8119fa7ea2cdc0a07316bb771f authored almost 13 years ago by Sandro Andreotti <[email protected]>
checker.php stuff

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9162 6adb6e08-d915-0410-9...

28c8d5d1a6ce1d9be6fbe91e19371554c6cbc318 authored almost 13 years ago by Sandro Andreotti <[email protected]>
added TOPP_CompNovoCID to TOPP tool doc group

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9161 6adb6e08-d915-0410-9...

a523ac5da76a38546b04ef47f964a97fce885608 authored almost 13 years ago by Sandro Andreotti <[email protected]>
added score type for peptides

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9160 6adb6e08-d915-0410-9...

c3ec75761151b1018e5a7e52ebb289160b35b577 authored almost 13 years ago by Hendrik Weisser <[email protected]>
** fixed TOPPAS bug: temp directory was not deleted when closing TOPPAS

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9159 6adb6e08-d915-0410-9...

03c08af630e3c91f506d2570f47ddaae93140b72 authored almost 13 years ago by Chris Bielow <[email protected]>
FeaFiMetabo fixes... again.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9158 6adb6e08-d915-0410-9...

dc9e2e097169e4f296f331b919eeb0ad1446281c authored almost 13 years ago by Erhan Kenar <[email protected]>