github.com/OpenMS/OpenMS commits | Ecosyste.ms: OpenCollective

Merge branch 'develop' into fix/ninjaOnWin

7396aea8db0b84f2c721802a3d15ea7e07416b03 authored about 2 years ago by Timo Sachsenberg <[email protected]>

nobr for longest parameter in html table

#6299

52781aa8b1f73464e6cde72c4c8554b1d0c5ebf7 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

install-win html close bold

#6299

f0741d3856d1ec1124a1af9b2aa79758b58df9e2 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

fix sync bug in ProteinInference.cpp

f871ac17d3241bb2dac100fdd46e56a1964cac1e authored about 2 years ago by jpfeuffer <[email protected]>

fix new copy dlls on win

e85dc154488a448d0fdc4213ee912a7d89045ca1 authored about 2 years ago by jpfeuffer <[email protected]>

Build version 14082022 - bug fixed

70710c4f6d04248eb5e2c5987f996c9ffb27fca7 authored about 2 years ago by kyowonjeong <[email protected]>

start passing through unused psms in FFID. plus some cmake for ninja on win

648c53b84f463f87500c5581c84b6887531cac53 authored about 2 years ago by jpfeuffer <[email protected]>

Add some TODOS and minor fixes

8674841199feda95cf8242e9222c74f3c71e7988 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

Allow configuring and building on Win with MSVC and nonVS generators

ae44cd26da32603c74196603172bb823dad0fd33 authored about 2 years ago by jpfeuffer <[email protected]>

add docs

15f780ba218f6b87c60190ec42b0c649ae6740e9 authored about 2 years ago by jpfeuffer <[email protected]>

add helper script

707e073ee8664e9724f0fbd377f1727b0cde7fb8 authored about 2 years ago by jpfeuffer <[email protected]>

add helper script

f2659a22b193f6f1e1fb6e36968cdb21e29b02cb authored about 2 years ago by jpfeuffer <[email protected]>

add docs

f61e1bcf09423f181aae3e6e6de1d33d53197d0b authored about 2 years ago by jpfeuffer <[email protected]>

handle negative and zero charge (#6283)

* handle negative and zero charge

* add docs

* Update PrecursorPurity.h

85b538a600077554a0db769df70dac15a3612b25 authored about 2 years ago by Timo Sachsenberg <[email protected]>

sync output in tool discvoery (#6290)

* sync output in tool discvoery

* also protect find sibling

897d3ad1efd66081c29cd29e04f89118faf8f428 authored about 2 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #6289 from OpenMS/fix/macos3DViewOpenGL

force OpenGL 2.1 on macOS

ecfaef02fd7ae3ae0acea7942ca0da25c77fff23 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

Update src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPView.cpp

Co-authored-by: Chris Bielow <[email protected]>

fce51910d3e2a01be1b411cafd44fe1e902b1b5b authored about 2 years ago by Julianus Pfeuffer <[email protected]>

force OpenGL 2.1 on macOS

fixes #6215

4f8561d9513c585de7ac24dfa7898dc3e9571358 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

Allow configuring and building on Win with MSVC and nonVS generators

d5e7e241b5fe72b841aade818dec1737908b1710 authored about 2 years ago by jpfeuffer <[email protected]>

Merge pull request #6287 from jpfeuffer/updContrib

update contrib. Was destroyed in #6230

08903a45d3b7a7b418b67cb4c0fa8479b44dd7b8 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

update contrib. Was destroyed in #6230

246d78f9b8f326986b777f705420c22d67e806c0 authored about 2 years ago by jpfeuffer <[email protected]>

docu badge

6a891436c9994e227b79916de4c6c4377e3966c4 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

gitpod badge style

f4a739eba6d2cca03094e99da827e88d521042b0 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

more badge fixes

cba3dce92e9302354243a2373caed351dd8d5ce9 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

badges

2c1bf252e34baabb7ce061e930d25a650fd27e63 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

fixes for OSW data mapping

94e5eb46d5c8749c7eec51c4dac15addded74a57 authored about 2 years ago by bielow <[email protected]>

add test and remove unused variables

479a28962e97f583c8734a7456c21638ff189a3e authored about 2 years ago by bielow <[email protected]>

fix DIA OSW view (partial)

921267154e74b00fa526304cd7e468b1c1f46440 authored about 2 years ago by bielow <[email protected]>

fix a new bugs in scrolling and zooming.

Unify code.

bb8f379dc87955efec420736ae9b2133f1c05329 authored about 2 years ago by bielow <[email protected]>

fix: PR comments and unneeded code blocks

d2a9134f74969374774a1ca42d4f606b8f635d80 authored about 2 years ago by dmccloskey <[email protected]>

fix, tests: removed debugging line and updated test accordingly

6dd86209a324cf10a85fe9e1392932456646079c authored about 2 years ago by dmccloskey <[email protected]>

tests: fixed extract spectrum test

640e270acbba1f272dddf190f508ba3d4744e5a3 authored about 2 years ago by dmccloskey <[email protected]>

Merge remote-tracking branch 'upstream/develop' into fix/DDAUpdates

24a7fa72ebd7db8e9f50568b5799c796abb2d187 authored about 2 years ago by dmccloskey <[email protected]>

First try and fixes to ExperimentalDesign (especially onetable), PLFQ (sample vs fracgrp) and cleanups.

3fb2c87be0e5edbe66c884a8e9329880ffa5409e authored about 2 years ago by Julianus Pfeuffer <[email protected]>

fixes for showing chromatogram data

6694e30f8ddde54a7fdcb4d1a32d1912f91c8143 authored about 2 years ago by bielow <[email protected]>

add MetaboliteSpectralMatcher meta values to Constants.h

1f09ff9a5b2430768986813d571e6cf1ddcbbf01 authored about 2 years ago by axelwalter <[email protected]>

Merge remote-tracking branch 'origin/feature/FLASHDeconv' into feature/FLASHDeconvOnly

07c5ffd77336c491b9da40603242a3cd73ce7754 authored about 2 years ago by JeeH-K <[email protected]>

[TEST] updated JSONExporter test files

d03dc56658d757d967223261c6df480171eaae83 authored about 2 years ago by Hendrik Weisser <[email protected]>

[IO] IDFileConverter: enable rewriting of .oms (SQLite) files without internal (lossy) conversion via legacy ID formats

4e1644474cfb52118074a0b69dc4a74e1c0633b7 authored about 2 years ago by Hendrik Weisser <[email protected]>

[INTERNAL] simplified export of .oms (SQLite) files to JSON (based on reproducible database keys)

5d5b0af2a10a54f5526fba87b3aaece8224cce8a authored about 2 years ago by Hendrik Weisser <[email protected]>

Merge remote-tracking branch 'origin/develop' into feature/FLASHDeconvOnly

4ea68e694f683b5c87e6b4b44ed58f9554a73c61 authored about 2 years ago by JeeH-K <[email protected]>

regex non capturing groups

192c602cecb10367b668bc007295c57a7430edb0 authored about 2 years ago by axelwalter <[email protected]>

hopefully fixed the seg fault in msms

6e3350d95f5193bd26b9f1afc325e9da0cb6c934 authored about 2 years ago by beschorneh32 <[email protected]>

always add spectrum to library

f57a8e48166038583e0e9be3946cab060ca3746d authored about 2 years ago by axelwalter <[email protected]>

ensure correct mv names for MetaboliteSpectralMatcher

226303949c32f1d54b521b628876e598fd8a2c7a authored about 2 years ago by axelwalter <[email protected]>

set spectrum precursor mz

2714330790480ddf3ce70a56f722ca429f928394 authored about 2 years ago by axelwalter <[email protected]>

Merge branch 'develop' into maxquant-output

52f3a04d6f6a483d74104e152c68d2ac80e26633 authored about 2 years ago by Timo Sachsenberg <[email protected]>

Merge branch 'idfile-ordered-keys' into idfile-json-export

c161e33c3fc51013c1b8d3833ce3c831edaa51d4 authored about 2 years ago by Hendrik Weisser <[email protected]>

[FORMAT] update schema version of .oms (SQLite) files, handle recent changes

b0330759e8f97309ab3cf028aa4ff085b428018a authored about 2 years ago by Hendrik Weisser <[email protected]>

fix 1D intensity filter

a5774f4dac3a552974094d4af68d856b04b34e4b authored about 2 years ago by bielow <[email protected]>

Merge branch 'develop' into feature/OswImCalibOutput

b89533100bd998207523777aad651cd6fc0cf795 authored about 2 years ago by Timo Sachsenberg <[email protected]>

Merge branch 'develop' of https://github.com/OpenMS/OpenMS into refact_toppview

6df605925b8db92012a4cf8317e7e90eb3a28651 authored about 2 years ago by bielow <[email protected]>

Merge branch 'develop' into idfile-ordered-keys

0b4a8572ed1b515ff58396d4f2d4ec5ac27a03a5 authored about 2 years ago by Hendrik Weisser <[email protected]>

[FORMAT] use reproducible database keys in .oms (SQLite) files

42fd65cd3e9d039fc339be276e62a13fb002896a authored about 2 years ago by Hendrik Weisser <[email protected]>

Merge pull request #6275 from cbielow/ConsoleFun

[FEATURE] Colored console output

9a45bd1e7dd9be3f9bb073d04c22c5ced79688e5 authored about 2 years ago by Chris Bielow <[email protected]>

remove Num Peaks regex

11bbaf60ef9bf25fd388ca21f57c1f284deb2df4 authored about 2 years ago by axelwalter <[email protected]>

line width

87b7aac8bbae2c1caf9efde2f3109574fb395816 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

fix warning

5de7fff3d3980fe614f63d9b45b844ebca59de8f authored about 2 years ago by bielow <[email protected]>

Merge pull request #6231 from axelwalter/fix/restructure-sirius-thirdparty

[Fix] Restructure Sirius in THIRDPARTY

8fccdca8a90229b6c831243bdf29766583c97a6d authored about 2 years ago by Julianus Pfeuffer <[email protected]>

fix compile warnings

e7f4651062e204b496fa687ec73a4bfa89dd9178 authored about 2 years ago by bielow <[email protected]>

Merge pull request #6279 from cbielow/warning_fixes

fix some frequent warnings

71e31e99ce36938f50f96e0036106cfd731576e5 authored about 2 years ago by Chris Bielow <[email protected]>

Merge branch 'ConsoleFun' of https://github.com/cbielow/OpenMS into ConsoleFun

ab6cd0bc3ec7dbf097862d74f690842ec82560a1 authored about 2 years ago by bielow <[email protected]>

fixes (macOSX)?

4d4ee7a7d188c25915a9906f017f15d36dfff766 authored about 2 years ago by bielow <[email protected]>

Update src/openms/include/OpenMS/FILTERING/SMOOTHING/SavitzkyGolayFilter.h

18d30adb88f924303b3f5caaa93909065c18c433 authored about 2 years ago by Chris Bielow <[email protected]>

Update src/openms/include/OpenMS/FILTERING/SMOOTHING/SavitzkyGolayFilter.h

ae56072fb098026a42ab51665a38c771a32504ce authored about 2 years ago by Chris Bielow <[email protected]>

Update src/openms/include/OpenMS/FILTERING/SMOOTHING/SavitzkyGolayFilter.h

8c2f224641b887e7aa06539c60196ded1f50e06e authored about 2 years ago by Chris Bielow <[email protected]>

Update src/openms/include/OpenMS/FILTERING/SMOOTHING/SavitzkyGolayFilter.h

872cbea8e355bc4bb46582a70ce6d65a86bce3a5 authored about 2 years ago by Chris Bielow <[email protected]>

store num peaks mv loading msp file

81a2e61694dffd9935a12ef46ee9ae4d6a2b717e authored about 2 years ago by axelwalter <[email protected]>

update Name regex

e763ccb981fec362fec7c3c9811c04147a7d1727 authored about 2 years ago by axelwalter <[email protected]>

update RT and point regex

6d4052d270c6489e1a2a030fba600d340ea46bd1 authored about 2 years ago by axelwalter <[email protected]>

bug fixing for jenkins build

8bba14abbac2980dff066dfc4d7f19abbe61ddf8 authored about 2 years ago by JeeH-K <[email protected]>

Merge remote-tracking branch 'origin/develop' into feature/FLASHDeconv

07c8bca483aa9e843fe302f353d0bf563603508c authored about 2 years ago by JeeH-K <[email protected]>

Build version 02082022 - min charge bug fixed

f8be7e9ae2c5944310d81c9ecad12e393ed6c654 authored about 2 years ago by kyowonjeong <[email protected]>

add Scan_ID mv from mgf file

4e125e631989414143a0677fc614662ab92576d8 authored about 2 years ago by axelwalter <[email protected]>

Build version 02082022 - min charge bug fixed

7e98ba800317acfc0eb8680c0c2ed31595ddfb0f authored about 2 years ago by kyowonjeong <[email protected]>

Build version 01082022

623447fb5c6ce04869553dc06e87c23a0b755ba0 authored about 2 years ago by kyowonjeong <[email protected]>

FLASHIda exclusion testing

12401ddcefbb5d7f197baabbbe766e10b85e37e6 authored about 2 years ago by kyowonjeong <[email protected]>

Charge decoy annotation bug fixed..

e0af9b878668afd2d06ca6e8c178005f5273e9cc authored about 2 years ago by kyowonjeong <[email protected]>

Clear bug fixed. Write detail now report -3 to max+3 isotopes. iso da distance was considered in peakgroup peak recruiting

bc7263d2fe29cece2f9a61aa2c3df6e91188f187 authored about 2 years ago by kyowonjeong <[email protected]>

Merge branch 'maxquant-output' of https://github.com/vrossow/OpenMS into maxquant-output

66a69a598cc838ad1747b5ee5f384d56bb15d760 authored about 2 years ago by beschorneh32 <[email protected]>

implemented suggestions from the review

e638914b074c330f16114da15217576ff56078e6 authored about 2 years ago by beschorneh32 <[email protected]>

Removed parameters and added noisy peak output for detailed output. Memory efficiency improved.

89499459cb7bfe704e791851c0bff8cf37c9fc0f authored about 2 years ago by kyowonjeong <[email protected]>

Removed parameters and added noisy peak output for detailed output. Memory efficiency improved.

2eeb05e1b8ca0c184d575da07ad7c354bc0edb1e authored about 2 years ago by kyowonjeong <[email protected]>

[TEST] Add tests to SwathMapMassCorrection

Rather than testing the entire OpenSwathWorkflow it is sufficient to
just test correctMz and cor...

08863c2dc1dc7a0a05f4775dad13d646ed2b12eb authored about 2 years ago by Joshua <[email protected]>

remove outdated comment

68b04efd384e3095b63d57e8ecc2c06ea35f623c authored about 2 years ago by Chris Bielow <[email protected]>

fix compile error

44f630ff8a13614afc8c884756fcbb15c50525cd authored about 2 years ago by bielow <[email protected]>

fix some frequent warnings

d7880ac7b2a0aec2972dc6626f76272a1b3583d1 authored about 2 years ago by bielow <[email protected]>

Merge branch 'develop' into ConsoleFun

a5ec0fbdf43ba30d485dc608e72498cf1f02daab authored about 2 years ago by Timo Sachsenberg <[email protected]>

remove Windows CRLF...

28c4e3345e1f8af5c6bd08254648969e56e7ac2c authored about 2 years ago by bielow <[email protected]>

Merge pull request #6278 from OpenMS/fix/compile

fix compile bug

a16568db230876c1e475a73da9b89d5d55e5ebf6 authored about 2 years ago by Timo Sachsenberg <[email protected]>

Merge branch 'develop' into feature/FLASHDeconvOnly

90253d8a13cd960b24c59b3722141e4b2290b0f1 authored about 2 years ago by JihyungKim <[email protected]>

add missing include

62d82d65d74f06dadeb4d49e396337ccca092e24 authored about 2 years ago by bielow <[email protected]>

fixes

4d4d2361751d22c83acafab67eb2312d07f62cec authored about 2 years ago by bielow <[email protected]>

MGF file import new meta values

a1cb38c53abf81820bd94adf06f7cd67868fa4e2 authored about 2 years ago by axelwalter <[email protected]>

fix another unused variable test

ce813530a7a206bab6f9bc24011776f663705a1c authored about 2 years ago by Timo Sachsenberg <[email protected]>

Timo Jihyung comments addressed

b71da28eb11c3ac713546448f2c66b66be004159 authored about 2 years ago by kyowonjeong <[email protected]>

Timo Jihyung comments addreassed

810ef29722ca7db2bbb9059072663997ef7c2c29 authored about 2 years ago by kyowonjeong <[email protected]>

remove unused functions (not for FLASHDeconvOnly)

697403eec0a76f709cc211332ff3d4fd1b9ab0a6 authored about 2 years ago by JeeH-K <[email protected]>

Decoy testing.

f6e65af76dff57c059f32f109b2f4709dd077570 authored about 2 years ago by kyowonjeong <[email protected]>

Update DimMapper.h

9988496ece1e2f0793c80cea18e34abe847a64d4 authored about 2 years ago by Timo Sachsenberg <[email protected]>