github.com/OpenMS/OpenMS commits | Ecosyste.ms: OpenCollective

handle chromatograms in FileMerger

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9667 6adb6e08-d915-0410-9...

51164f3eaa2c12256c5d6ee144339c9851811a0f authored over 12 years ago by Hannes Roest <[email protected]>

Code cleanup, add maintainer for TraML

- replace tab with space
- remove using namespace std

git-svn-id: https://open-ms.svn.sourcefor...

f2e5b5c4327cf86839352e6c98f06dd29d315e35 authored over 12 years ago by Hannes Roest <[email protected]>

Support for TraML version 1.0.0

- Use updated ToyExample.TraML (version 1.0.0) and use test with
TraML1.0.0.xsd schema
- In...

6a5fda100352391da889b684dc10954008895f06 authored over 12 years ago by Hannes Roest <[email protected]>

** OMSSAAdapter: replaced endl by \n, to avoid flush

** minor

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9664 6adb6e08-d9...

7b0429b05a20d9a3d22296445aeb2f2c389e6933 authored over 12 years ago by Chris Bielow <[email protected]>

some coding convention fixes for visual classes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9663 6adb6e08-d915-0410-...

ae2299811b82a3c4ce553375c3505674761d5313 authored over 12 years ago by Timo Sachsenberg <[email protected]>

Support for TraML version 0.9.3

- SourceFileList tag support
- TargetList tag support
- minor fixes with indent

git-svn-id: htt...

577b3d7ee9333163baf02cf5c90dcbf468728ed7 authored over 12 years ago by Hannes Roest <[email protected]>

coding convention fix for VISUALIZERS headers

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9661 6adb6e08-d915-0410-9...

8e6f0da26ab2dec2b1aa9b813fc38629099e9d78 authored over 12 years ago by Timo Sachsenberg <[email protected]>

coding convention fix for VISUALIZERS sources

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9660 6adb6e08-d915-0410-9...

a59cde02e2a76966caabf55b30b10696a863fa25 authored over 12 years ago by Timo Sachsenberg <[email protected]>

minor update to uncrustify.cfg

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9659 6adb6e08-d915-0410-9...

f14e7e3c740977695ddfb5c3a87e54bebfe48266 authored over 12 years ago by Stephan Aiche <[email protected]>

fixed some documentation issues in LogStream

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9658 6adb6e08-d915-0410-9...

231fdb63718ce55bcc03db92e73ccb9791660703 authored over 12 years ago by Stephan Aiche <[email protected]>

style cleanup of MapAlignPoseClustering

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9657 6adb6e08-d915-0410-9...

1d565f37e9c38b06a34ba1a932c30eb062410c6d authored over 12 years ago by Stephan Aiche <[email protected]>

svn:ignore update on OpenMS folder

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9656 6adb6e08-d915-0410-9...

4dc5c6673c24c459928d4ff2a9fc921169826e4c authored over 12 years ago by Stephan Aiche <[email protected]>

style cleanups in the MASSDECOMPOSITION module

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9655 6adb6e08-d915-0410-9...

d24df3565a291faf0e93159c6ba237d50b6271f7 authored over 12 years ago by Stephan Aiche <[email protected]>

** fixed parsing of Mascot pep_scan_title tag: now using the native spectrum ID which Mascot takes directly from the mzML input file

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9654 6adb6e08-d915-0410-9...

4d28021d253f110cfc936263247da0f0ac94d79e authored over 12 years ago by Chris Bielow <[email protected]>

added the latest version of the TraML schema.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9653 6adb6e08-d915-0410...

db30b5ba8901953cbba7fbb60fd7f88d9a89c804 authored over 12 years ago by Oliver Kohlbacher <[email protected]>

** added type of file(s) to input node of TOPPAS and a tooltip displaying all files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9652 6adb6e08-d915-0410-9...

8bf95d3ee69f17ff3e9cab1ad479ec0f666a9ccf authored over 12 years ago by Chris Bielow <[email protected]>

** minor

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9651 6adb6e08-d915-0410-9...

4fcc7491e0b5f65c90632b75fdfed53cb1862b2a authored over 12 years ago by Chris Bielow <[email protected]>

made ConsensusFeature(BaseFeature) c'tor explicit

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9649 6adb6e08-d915-0410-9...

aeddfa887ef614ee1aea5dbc4cf50a744ea6798c authored over 12 years ago by Stephan Aiche <[email protected]>

fixed cpplint issues in KERNEL

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9648 6adb6e08-d915-0410-9...

2e5ebd16f5d7ab0db848c66d7bbcb53a1cdc9e83 authored over 12 years ago by Stephan Aiche <[email protected]>

fixed issues marked by cpplint in LogStream

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9647 6adb6e08-d915-0410-9...

a9e7df478ff14e68435d6885f738bbfb776562ca authored over 12 years ago by Stephan Aiche <[email protected]>

Restructured test system:

* standard mode is the same as before without the cppcheck tests
* ENABLE_STYLE_TESTING=On acti...

260a419c9c393eddb14c558addc1307c8cad1253 authored over 12 years ago by Stephan Aiche <[email protected]>

integrated cpplint coding convention check into build system

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9643 6adb6e08-d915-0410-9...

e0d331e85f5062d406f1f2276be159950b570c53 authored over 12 years ago by Timo Sachsenberg <[email protected]>

added QCCalculator in utils

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9634 6adb6e08-d915-0410-9...

d395107a5b77814f3465e895996c887885acbc84 authored over 12 years ago by Mathias Walzer <[email protected]>

** fix cppchecker warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9632 6adb6e08-d915-0410-9...

ca79420ac621ebb51deffad9f926dd01d451e408 authored over 12 years ago by Hannes Roest <[email protected]>

** allow parsing of MascotMXL files with missing RT, but scan indices instead (requires the use of the corresponding mzML file in IDFileConverter)

** MascotAdapterOnline more robust now, using the same mechanism (even though it should not be re...

f45621480c4d11f07f6220d380cc82036e3af642 authored over 12 years ago by Chris Bielow <[email protected]>

** docu fix for IDPosteriorErrorProbability

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9630 6adb6e08-d915-0410-9...

b4a29f78db9f6855f4cb61d8533f2c308faa08aa authored over 12 years ago by Chris Bielow <[email protected]>

fixed numbering of submaps if 'keep_subelements' is used

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9624 6adb6e08-d915-0410-9...

22727fb3f15c39c192ef18a3c6fd54f1b6e18669 authored over 12 years ago by Hendrik Weisser <[email protected]>

comment out connections that did not have a corresponding signal and

thus generate an error (introduced in TOPPViewChrom branch merge).

git-svn-id: https://open-ms.s...

e490c06cac11ccddc7c8773067d256c41c35b302 authored over 12 years ago by Hannes Roest <[email protected]>

Basic functionality of scrolling through Chromtagrams works for single and

for multiple Chromtagrams.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenM...

67359a3a3c96c84fd998f166306921cf7c2e2b6a authored over 12 years ago by Hannes Roest <[email protected]>

Do not use concurrent zoom across MS1 and MS2

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9620 6adb6e08-d915-0410-9...

3dc51657ee49e586b419b86c864ce30aac36ec33 authored over 12 years ago by Hannes Roest <[email protected]>

Add Menu item to turn the linked zoom on/off

Change the text of the link zoom menu item

git-svn-id: https://open-ms.svn.sourceforge.net/svnro...

0ea21757af766e6619de206e711ff21f85a30d97 authored over 12 years ago by Hannes Roest <[email protected]>

Concurrent zoom in several windows. Generate event when visible area

changes.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9618 6adb6e08-d9...

bdf522c0f56426163e2a75747dcf5333da76cbcf authored over 12 years ago by Hannes Roest <[email protected]>

use visible area from 2D view for 1D view

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9617 6adb6e08-d915-0410-9...

09fd1b0d7b02fa04e903bb2ba410c8a6e978397e authored over 12 years ago by Hannes Roest <[email protected]>

add peptide sequence to spectrum, use DM_CONNECTEDLINES as default for chromatograms

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9616 6adb6e08-d915-0410-9...

95b3f45051e6f4f27e1a5002a9a85ddac4f4fea9 authored over 12 years ago by Hannes Roest <[email protected]>

TOPPViewChrom branch merge (all patches)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9615 6adb6e08-d915-0410-9...

ac312415fb471f3b8f57b07bd3c565a116d9d9e8 authored over 12 years ago by Hannes Roest <[email protected]>

TraML modification handling

* TraML can now correctly write modifications
* changed attribute monoMassDelta to correct monoi...

6c0dee1f03bbce67232ce5ca1f5adb51c90e625f authored over 12 years ago by Hannes Roest <[email protected]>

** minor build system error messages

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9610 6adb6e08-d915-0410-9...

9b20b82b03de9b8a8c69f6a61c81686f4aca3549 authored over 12 years ago by Chris Bielow <[email protected]>

** better error message during configure with missing contrib

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9609 6adb6e08-d915-0410-9...

4b54bf0d586ee82e845f81410e6964471cb3f622 authored over 12 years ago by Chris Bielow <[email protected]>

** removed unnecessary include

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9608 6adb6e08-d915-0410-9...

2f5f899ffd7f5e7a89950b60b8e17a2a6e71d56c authored over 12 years ago by Chris Bielow <[email protected]>

** fixed lower case in include

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9605 6adb6e08-d915-0410-9...

c28d84a926f0a0575f20626b566c80e17bcdabe0 authored over 12 years ago by Chris Bielow <[email protected]>

** fixed #240, #419

** more robust reading of MascotXML (in terms of XML attributes and var mods)
** extended tests f...

8a123b930e1c84a23b7ba15722d6aaacc33ff84a authored over 12 years ago by Chris Bielow <[email protected]>

** speed up to MascotXMLFile reading

** some more docu and typo fixes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms...

c26749d4ef58bd7e1c56097bc76ceeaed9c63ce0 authored over 12 years ago by Chris Bielow <[email protected]>

ff out parameters are now checked while ff starts and not after the whole algorithm finished

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9602 6adb6e08-d915-0410-9...

a6154cb2f211450b31f54e1ca0f95f96c3fd15b3 authored over 12 years ago by Stephan Aiche <[email protected]>

allow filefilter to convert 32/64bit precision data arrays in mzML files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9601 6adb6e08-d915-0410-9...

a59ba78cc74e03efd5892fdc04f48673a0e11f60 authored over 12 years ago by Hannes Roest <[email protected]>

** documented OMSSA and Mascot XML as input formats for IDFileConverter

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9600 6adb6e08-d915-0410-9...

5c425df73a1b2ed568b060ab520cf74ae72273b5 authored over 12 years ago by Chris Bielow <[email protected]>

** Param Docu improved

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9599 6adb6e08-d915-0410-9...

5d71135a112edf11d78df11d5e4f863f51c64469 authored over 12 years ago by Chris Bielow <[email protected]>

minor customizations of the uncrustify.cfg to comply to the openms coding convention

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9598 6adb6e08-d915-0410-9...

34a2db34b443d410e2c15a89b750b4d0152adfb0 authored over 12 years ago by Stephan Aiche <[email protected]>

added uncrustify.cfg for OpenMS coding convention

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9597 6adb6e08-d915-0410-9...

c28760d3e2c3d14d55715fa6b41543161229d906 authored over 12 years ago by Stephan Aiche <[email protected]>

** fixed #410

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9596 6adb6e08-d915-0410-9...

1088ada156c8f931ef632a4aeb160d3c6c39d858 authored over 12 years ago by Chris Bielow <[email protected]>

** fixed #408 (TOPPAS output directories now include tool names)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9595 6adb6e08-d915-0410-9...

9b0703f798024c69622b2f73e6ce87394dee7c14 authored over 12 years ago by Chris Bielow <[email protected]>

** fixed #406

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9594 6adb6e08-d915-0410-9...

a662faacb17c1596fae71d07475f58ecaaa0389a authored over 12 years ago by Chris Bielow <[email protected]>

** re-enabled Type field editing in TOPPAS (all parameters named 'type' can now be edited)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9592 6adb6e08-d915-0410-9...

6a93ee2fa212471b64fc07141f5fa63e1dcde7aa authored over 12 years ago by Chris Bielow <[email protected]>

** minor typo fixed

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9591 6adb6e08-d915-0410-9...

ad9cf60935d64122f2a14d49a072a44a4a903984 authored over 12 years ago by Chris Bielow <[email protected]>

** fixed mapalignment segfault introduced in r9585

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9590 6adb6e08-d915-0410-9...

58ddfc6d6c5617151d422718821aa1c2c2bcc5e3 authored over 12 years ago by Chris Bielow <[email protected]>

** minor typo

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9589 6adb6e08-d915-0410-9...

b910a286b7f1790f7e63c4c88f537a7e432a4186 authored over 12 years ago by Chris Bielow <[email protected]>

** added section description for labeling in MSSimulator .ini

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9588 6adb6e08-d915-0410-9...

706b13448ca4aaf8a9ea7ab0ca6d75691be61f5d authored over 12 years ago by Chris Bielow <[email protected]>

** fixed #411

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9587 6adb6e08-d915-0410-9...

90f50b33518e5068d333f817cea2aa7b94ca7a97 authored over 12 years ago by Chris Bielow <[email protected]>

Fixed: huge memory footprint of MapAlignmentPoseClustering has been solved

for feature map alignment by reading the feature maps, condensing them to
(more memory efficient...

595140b1925f1c3121ac14ce601d72336956dd02 authored over 12 years ago by Oliver Kohlbacher <[email protected]>

SILACAnalyzer and FeatureFinderRaw default parameters changed.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9580 6adb6e08-d915-0410-9...

a2082cd87a2b3736df28d382b720f47f2fb1e950 authored over 12 years ago by Lars Nilse <[email protected]>

rewrote O(n^4) unreferenced protein determination part of IDFilter to O(n log (n))

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9578 6adb6e08-d915-0410-9...

b5783225b9909463b57ce82c8649f99a8b7d9e6b authored over 12 years ago by Timo Sachsenberg <[email protected]>

added option to retain unreferenced protein hits

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9577 6adb6e08-d915-0410-9...

389ccb50ae645599c6af90e2ed195e18843835d8 authored over 12 years ago by Timo Sachsenberg <[email protected]>

Sort ReactionMonitoringTransitions by Product MZ

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9574 6adb6e08-d915-0410-9...

6f29b5bcef256edef0479e02e4d69e654c832a19 authored over 12 years ago by Hannes Roest <[email protected]>

HashGrid: Make cell index signed to allow negative values, make sure it is rounded consistently, not truncated

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9571 6adb6e08-d915-0410-...

213a1e6be53e8b53fbe65f539f9162ceab1c07b9 authored over 12 years ago by Bastian Blank <[email protected]>

posterior scoring for spectraSt fvalue

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9570 6adb6e08-d915-0410-...

9e408ab8960b7fdb2c90055648291b6a86be226e authored over 12 years ago by Timo Sachsenberg <[email protected]>

forgot IDDecoyProbability in utils section of ToolHandler

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9569 6adb6e08-d915-0410-9...

c6b60f9c440a0b9fd78269fc5c0d604aa3b6f09e authored over 12 years ago by Timo Sachsenberg <[email protected]>

fixed bug introduced for identifications

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9568 6adb6e08-d915-0410-9...

6b7a8697fef6babecaa73c6c18bae095c727f611 authored over 12 years ago by Timo Sachsenberg <[email protected]>

added deprecated util IDDecoyProbability on external request

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9567 6adb6e08-d915-0410-9...

d62fdb207ce22f19ee77a51d1e4d3088e24716bd authored over 12 years ago by Timo Sachsenberg <[email protected]>

** minor improvement to MascotRemoteQuery

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9566 6adb6e08-d915-0410-9...

88863d32a86742fda8e3c40c7b7d19e90c99101d authored over 12 years ago by Chris Bielow <[email protected]>

** fixed errors introduced in [9564]

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9565 6adb6e08-d915-0410-9...

2bdc769a4669848495138d3dd1409ad391cce906 authored over 12 years ago by Chris Bielow <[email protected]>

** speed improvements to OMSSA, XTandem and MascotAdapters (load only level 2 spectra)

** speed improvement to FileFilter: load only given MS levels

git-svn-id: https://open-ms.svn.so...

c2f2bbee4c6a2a2b26a0ee955d8aec1ee02e9648 authored over 12 years ago by Chris Bielow <[email protected]>

fixing #404 as proposed by hroest

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9563 6adb6e08-d915-0410-9...

40ccc5094e0ffba3b074c72082bea493d3388886 authored over 12 years ago by Stephan Aiche <[email protected]>

* fixed #401

* moved GlobalExceptionHandler for clarity to its own header/source file
* GlobalExceptionHand...

db4451077ab1e608fab9501bbae0e63d2ad17331 authored over 12 years ago by Stephan Aiche <[email protected]>

** added TODO to inspectadapter (rewrite)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9561 6adb6e08-d915-0410-9...

51f6043e5d97762c46a5cc76bf15b0198e5082d3 authored over 12 years ago by Chris Bielow <[email protected]>

** fixed path issue (spaces) and other escaping stuff for OMSSAAdapter

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9560 6adb6e08-d915-0410-9...

2c810ea54f4070c51e14d741f4e7709a918f691b authored over 12 years ago by Chris Bielow <[email protected]>

bug fix in SILACAnalyzer (in_filters is input not output file)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9559 6adb6e08-d915-0410-9...

7c223b6e5808917b97ceca8795f67728ff8c27f7 authored over 12 years ago by Lars Nilse <[email protected]>

** fix for segfault when OPENMS_DATA_PATH is set incorrectly (e.g. in Windows binary installers, or when an install prefix was given to CMake but Executables are executed before installation)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9555 6adb6e08-d915-0410-9...

38f63b07c051cc6000eccc1527b485caa9181a9b authored over 12 years ago by Chris Bielow <[email protected]>

added flag to produce probabilities for correct identifications : 1 minus pep

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9554 6adb6e08-d915-0410-...

fa53b1d5a5575441ccb75b2b08900c6362350e69 authored over 12 years ago by Sven Nahnsen <[email protected]>

** fix for fileinfo: use std::endl if output needs to be written immediately, "\n" otherwise

** improved error message for SemanticValidator

git-svn-id: https://open-ms.svn.sourceforge.net/...

d2f8ea84b85f087b64af13351effd82d7912e412 authored over 12 years ago by Chris Bielow <[email protected]>

** mzML fix: preventing segfault when binary data is smaller/larger than indicated by defaultArrayLength

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9552 6adb6e08-d915-0410-9...

bdb1b7dc447f2bf180221b0c798c3b401200fbbf authored over 12 years ago by Chris Bielow <[email protected]>

updated version number in INIUpdate result files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9550 6adb6e08-d915-0410-9...

edc2b54025b22adcf064422311774c0ac1cd4b43 authored over 12 years ago by Stephan Aiche <[email protected]>

better mzTab 0.7 specification support

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9547 6adb6e08-d915-0410-9...

f8747dc2485df6f7a1f935fde8aa5b1886a8a4da authored over 12 years ago by Timo Sachsenberg <[email protected]>

improved mzTab 0.7 support

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9545 6adb6e08-d915-0410-9...

0163dfab6e7314af27aaf85a12dc4b17aa70e87b authored over 12 years ago by Timo Sachsenberg <[email protected]>

fixed minor test failure introduced in [9539]

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9544 6adb6e08-d915-0410-9...

a87444fa8d1a814909e988e097e42674c56c23c8 authored over 12 years ago by Stephan Aiche <[email protected]>

another splash screen version for 1.10

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9543 6adb6e08-d915-0410-9...

4f2d09ae1e4001ee3cb1d2145dad910caeaec2e0 authored over 12 years ago by Stephan Aiche <[email protected]>

fixed version number to 1.10 in splashscreens

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9540 6adb6e08-d915-0410-...

f5971a69950ca436a6ac2377a21b87a507184b99 authored over 12 years ago by Oliver Kohlbacher <[email protected]>

updated head version to 1.10; removed (for now) the version numbers from TOPPView/TOPPAS splashscreens

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9539 6adb6e08-d915-0410-9...

325d34b1555da0e4a82829df4fe472c141c1fc1f authored over 12 years ago by Stephan Aiche <[email protected]>

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9538 6adb6e08-d915-0410-9...

64d24ac42dd5cd7999b43c48664598042ce99f01 authored over 12 years ago by Chris Bielow <[email protected]>

** added MSNSPECTRUM to InstrumentSettings and MzMLHandler

** added todo to MzMLHandler as it writes TOF properties etc for all mzML files (should not happe...

71ce0b7bd3a294931ef12b8e0f5364685848fc52 authored over 12 years ago by Chris Bielow <[email protected]>

** updated internal FAQ

** renamed some helper scripts
** removed old helper scripts

git-svn-id: https://open-ms.svn.sou...

4e8f8492864d5d080a4781421ca7575e15a11e67 authored over 12 years ago by Chris Bielow <[email protected]>

** merged Release1.9 branch back into HEAD

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@9535 6adb6e08-d915-0410-9...

e45985ad956ba4ceac3fc2de0a2020f085cb584b authored over 12 years ago by Chris Bielow <[email protected]>

FinderFinderRaw docu fixed.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9534 6adb6e0...

79448c949dae0575092e95d786b2fe603f6d66ee authored over 12 years ago by Lars Nilse <[email protected]>

** fixed docu... (not complete yet)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9533 6adb6e0...

b9e4c32fb83f972e876a62befa445633a2df5c1c authored over 12 years ago by Chris Bielow <[email protected]>

** removed WordPress code from OpenMS code branch

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9528 6adb6e0...

34224102558a820edfeae6a76bbfd3af2fc53e5e authored over 12 years ago by Chris Bielow <[email protected]>

fixed Lion background image problem

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9526 6adb6e0...

f76510422cf32f4a549a953c327f38deee508c42 authored over 12 years ago by Stephan Aiche <[email protected]>

minor improvements for mac os package generation; added convenience target to generate final mac os dmg 'final_package'

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9525 6adb6e0...

4d324b670d477dc4535075ed47e5b546d30edb34 authored over 12 years ago by Stephan Aiche <[email protected]>

TOPPAS running on mac os now uses the TOPPView.app instead of TOPPView executable to open files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9524 6adb6e0...

73067b1dded1d82cac857cc007ab2d52d2191b08 authored over 12 years ago by Stephan Aiche <[email protected]>

** trivial: error message improved

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9523 6adb6e0...

2b8dd0d2b8772d114022f7e000342315dc481a0c authored over 12 years ago by Chris Bielow <[email protected]>

TOPPAS: descriptions of example workflows now also use Arial, 12 and should be readable on all platforms

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9522 6adb6e0...

75d2a6a66a01fcebb3c43fa04e749d7fd96358a0 authored over 12 years ago by Stephan Aiche <[email protected]>

TOPPAS: description widget now clears its content if all workflows were closed

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.9@9521 6adb6e0...

8d8117f8b55c17299cb580ddd2262fdbeb908394 authored over 12 years ago by Stephan Aiche <[email protected]>

** TOPPAS:

- fixed mangled filename when downloading files from online repository
- set default font of desc...

258326d787d8d93e0a3402c850f15a29203d569c authored over 12 years ago by Chris Bielow <[email protected]>