Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/OpenMS

The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS

Merge pull request #6342 from OpenMS/fix/pep_prot_quant

[fix] don't crash on empty peptide hits vector in PeptideAndProteinQuant

a0826c37f77996b66125c64373a7dc207234e517 authored about 2 years ago by Timo Sachsenberg <[email protected]>
don't crash on empty peptie hits vector in PeptideAndProteinQuant

5064187a0e66d426a9375d3de9e6011030be544e authored about 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into feature/nase_debug

6ae250fba2fb01c9c4b77a853ee878d82d1849e4 authored about 2 years ago by Samuel Wein <[email protected]>
[fix] include proper retention time in NASE debugging output

d261e9ece1142437e0108a770fbdf9ab567d103a authored about 2 years ago by Samuel Wein <[email protected]>
[feature] add wrapping for NucleicAcidSpectrumGenerator

48c7ec67b258005a25bc4e719fac7412510e4286 authored about 2 years ago by Samuel Wein <[email protected]>
[fix] include proper retention time in NASE debugging output

1e8ef1b466649e8e4b4f069eeca3068b9e8a7901 authored about 2 years ago by Samuel Wein <[email protected]>
Merge pull request #6339 from OpenMS/fix/plfq_bugs

fix some bugs recently introduced in large refactoring

e3dd2c934a49a4008494cbc1eda830dbbfa2f85c authored about 2 years ago by Timo Sachsenberg <[email protected]>
workaround for duplicated score types

3f9515639508d740e37794948c0496a64bef7e54 authored about 2 years ago by timosachsenberg <[email protected]>
if scores have same name, old one gets tilde appended

8b61c88f2ba67dbea554d22497e2d085b4a82165 authored about 2 years ago by timosachsenberg <[email protected]>
Fix typo for thiol+methyl parsing

8362b409a7635947beb8c5413b96e68087a23323 authored about 2 years ago by Samuel Wein <[email protected]>
fix rel. vs. basename in other direction

163c5d1549c754e3d3ffd5d1626364fd25f9678d authored about 2 years ago by timosachsenberg <[email protected]>
fix some bugs recently introduced in large refactoring

4b238c7405b4e74135681e3fd2b937d90ebe8dbf authored about 2 years ago by timosachsenberg <[email protected]>
Merge branch 'develop' into feature/OswImCalibOutput

e829919fc0964a3eaaa9d96853d1a1ed3f12ff57 authored about 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6306 from jpfeuffer/fix/syncIDQuantPLFQ

Huge refactor of PLFQ and Experimental design

e4143aacf975dc1f7017aa91edb82c2ce95cd3ac authored about 2 years ago by Timo Sachsenberg <[email protected]>
Update src/openms/source/ANALYSIS/ID/IDScoreGetterSetter.cpp

Co-authored-by: Julianus Pfeuffer <[email protected]>

644311b91f81551f30ea425c83f4996816b32109 authored about 2 years ago by Timo Sachsenberg <[email protected]>
[fix] fix linter's mess

a855f17db0e528015e5f6ecc7dc88024ffe819b2 authored about 2 years ago by Samuel Wein <[email protected]>
fix lint

e345464076927aa4a33f2fcc7c5fc212e02ccba9 authored about 2 years ago by GitHub Linter <[email protected]>
Merge branch 'develop' into feature/new_thiols

2fbf174dacb9b109b62b81964772b963883e5990 authored about 2 years ago by Samuel Wein <[email protected]>
[nop] clean up some comments

c933155a86663e2d4dafd06a0987eadd5f8b9120 authored about 2 years ago by Samuel Wein <[email protected]>
[feature] fixed calculation for thiol linkages

9a2c4b493acdd8b7676416a0a3cc8998c9e2244f authored about 2 years ago by Samuel Wein <[email protected]>
fix small compile error/warning

1d3b3b2e6fe2c380fd6a1576c6337ec876862732 authored about 2 years ago by Timo Sachsenberg <[email protected]>
Fix the very last tests that I overlooked.

b9bdfd0f9d914bc295893e0313f4b81fd93e422b authored about 2 years ago by Julianus Pfeuffer <[email protected]>
Allow merged IDs for spectralCounting. Fix some bugs with empty CMaps.

Update tests.

9abcb77e7bec40b733435a6f4ba234f5c0f908ad authored about 2 years ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into fix/syncIDQuantPLFQ

344ff681b6d6987e92e0ad6133a7237114d0d540 authored about 2 years ago by Julianus Pfeuffer <[email protected]>
fix tests. mostly 0 vs 1 based issues

34aaa7eb5a215a24b248b7694b7c768fe37f598b authored about 2 years ago by jpfeuffer <[email protected]>
[FIX] Alter gene select and join query to deal with multi gene-peptide mapping

3fc6961cb94ebb92009a51035f2d1cabb0e9738a authored about 2 years ago by singjc <[email protected]>
[MINOR] Move name in Authors list and add change to CHANGELOG

5e16b71e6afd136bbe3589130ba4ae5b4cd5c6b2 authored about 2 years ago by singjc <[email protected]>
[FIX] Alter gene select and join query to deal with multi gene-peptide mapping

75bf0d1a7873db97bc5b61975be00c53a7cf8c7d authored about 2 years ago by singjc <[email protected]>
[NOP] Fix spacing

fdcd6ae31711048f5de522c676f976631e6433bc authored about 2 years ago by Joshua Charkow <[email protected]>
Merge pull request #6288 from jpfeuffer/fix/ninjaOnWin

Allow configuring and building on Win with MSVC and nonVS generators

e5eed0428852668f67a8c130eff25bf7331aae8c authored about 2 years ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into fix/ninjaOnWin

9875e6ea8658fb1e575ed177dca71e65a89783f1 authored about 2 years ago by Julianus Pfeuffer <[email protected]>
Apply suggestions from code review

Co-authored-by: Chris Bielow <[email protected]>

598afeb9ee8b6f603938e9a13cfe8476dded7f7f authored about 2 years ago by Julianus Pfeuffer <[email protected]>
Update doc/doxygen/install/install-win.doxygen

Co-authored-by: Chris Bielow <[email protected]>

c0b080081d456dd6b7771704d1d4cb5b0f74f10b authored about 2 years ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into jpfeuffer-patch-4

b82e09ab7e2ae60ae2fa46d4924ce2c7f4d3dfa0 authored about 2 years ago by Julianus Pfeuffer <[email protected]>
[NOP, COMMENT, TEST, DOC] minor fixes

Fix whitespaces and tabs
Add documentation for findSwathMapsPasef function
Fix OpenSwath Test 23...

0294cab23b173fc76b0db60dca6721fe570982a8 authored about 2 years ago by Joshua <[email protected]>
Merge pull request #6328 from poshul/feature_onemodule_py

Fix tooling to compile pyopenms as a single module

3c4f8ba175e3d70cac7fdcaaa02642b5b2b443e9 authored about 2 years ago by Julianus Pfeuffer <[email protected]>
Update CMakeLists.txt

fda3eff629c264a3eaa75e5f88801268538820e2 authored about 2 years ago by Samuel Wein <[email protected]>
Merge remote-tracking branch 'upstream/develop' into feature/FLASHDeconv

748041ece468e65cb6aaca75d032570113f50db3 authored about 2 years ago by JeeH-K <[email protected]>
fix text for typing info

8aebf21e9cbde5ab3deb730671c3b7d344a1f72d authored about 2 years ago by Samuel Wein <[email protected]>
Merge branch 'develop' into feature/OswImCalibOutput

30ea02ab431fdb926cdedcabe91b70e99a1a5f55 authored about 2 years ago by Joshua Charkow <[email protected]>
Merge branch 'develop' into feature_onemodule_py

1692ce9f7f8a9e9d22049e1b8a759b25f50b436e authored about 2 years ago by Samuel Wein <[email protected]>
reverted suffix addition in CMakeLists, fixed create_cpp_extension to handle single module compilation, fixed CMakeLists to map imports properly

d1732a4c3296878d9473d78963f443c2203e7958 authored about 2 years ago by Samuel Wein <[email protected]>
Build version 06092022

2ce9ccddb5d83c469a5aa26633a4ae1f5ef17eae authored about 2 years ago by kyowonjeong <[email protected]>
handling case where we have only a single pyopenms module

40f165f8118ead065f53dbc87595f60942020fda authored about 2 years ago by Samuel Wein <[email protected]>
[DOC][COMMENT] minor doc fixes to new changes

081cb47b8c3b488e5a34d6f139d11c7328aabc2b authored about 2 years ago by Joshua <[email protected]>
Update README.md

784375c0ea77ba1728f14755bb777a35f1cff2be authored about 2 years ago by Julianus Pfeuffer <[email protected]>
Update README.md

1a8a3d4ba2af9ea91a7148c6722c67ff452fee1e authored about 2 years ago by Julianus Pfeuffer <[email protected]>
Update README.md

86dc96c7f8c775267e4af84c9f7c6cdee8916e66 authored about 2 years ago by Julianus Pfeuffer <[email protected]>
Update README.md

3f8a01d69dc2812d3deb08ac790e5c427c9aa595 authored about 2 years ago by Julianus Pfeuffer <[email protected]>
Merge remote-tracking branch 'upstream/develop' into feature/FLASHDeconv

62abdb4ff6836c20cf50cf4cd9e6795c24312122 authored about 2 years ago by JeeH-K <[email protected]>
Build version 01092022

d616afb70a117a1e629a8cd3b0a0162403eeac71 authored about 2 years ago by kyowonjeong <[email protected]>
first running version. and updated tests

ebe2a1f2c120b78e9a4ba59da7ce4a55132a9e45 authored about 2 years ago by Julianus Pfeuffer <[email protected]>
Update NASequence.cpp

Clarify comment

5f43372c929d053ec2c6cf09f84a852c6a0332dc authored about 2 years ago by Samuel Wein <[email protected]>
Merge pull request #6319 from axelwalter/feature/sirius-login

[Feature] Sirius user account login

3cbb868b31dacda665f0a5a037c1ab34f2fa9d50 authored about 2 years ago by axelwalter <[email protected]>
more cleanups and fixes. implement coverage and mod collection for consensusmaps

ac07ea08d93e588045202bd05af7bff2ddf2cd30 authored about 2 years ago by jpfeuffer <[email protected]>
fix one table design

a30bd100a359a76535bfe26513caf879718f8872 authored about 2 years ago by Julianus Pfeuffer <[email protected]>
check login info in SiriusAdapter

c93d3156737915dc2ee025129543e1ed5ddb643d authored about 2 years ago by axelwalter <[email protected]>
wrap sirius login function

a71618afac61b325824d4ad8d952c6a2f3e3a0cd authored about 2 years ago by axelwalter <[email protected]>
implement login for SiriusAdapter

1452e744959b93c95edc981f7a2ebab237ac14ba authored about 2 years ago by axelwalter <[email protected]>
Merge branch 'develop' into jpfeuffer-patch-4

e45e1dbfc1e6e4674a9cdd48f34331e3bbac4d33 authored about 2 years ago by Timo Sachsenberg <[email protected]>
Update .gitpod.Dockerfile

908c8d935556c2ebcea41e75265e3e479b5a0045 authored about 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6318 from OpenMS/updateContrib

[Update] submodule with new archive URLs

bf3db80f461c2b6f8c7ed339d9b5367c4b30b1af authored about 2 years ago by Julianus Pfeuffer <[email protected]>
[Update] submodule with new archive URLs

30d554f2aa112dd91341fdd1840c864302a0af5e authored about 2 years ago by jpfeuffer <[email protected]>
Merge pull request #6311 from OpenMS/jpfeuffer-patch-1

pyopenms class doc link

2e5747ce1d56a6d66642448ac75e2996ac0f1920 authored about 2 years ago by Julianus Pfeuffer <[email protected]>
Further fixes and cleans

f6a87fb83370c2fdcab7d1f91a831d44c50fcad0 authored about 2 years ago by Julianus Pfeuffer <[email protected]>
fix missing electron masses

562b018de2f6e657278dfbfe1e99e2f3bcd5c3f7 authored about 2 years ago by Samuel Wein <[email protected]>
do not `cd..` for evergreen headers

c84e0e75f788eb2785a89db788502941168e7a03 authored about 2 years ago by Julianus Pfeuffer <[email protected]>
Move install location of thirdparty headers into openms include dir

fixes #6314
fixes #6315

562fd7e1b123cbf95f19482e1cf5e4de058ab833 authored about 2 years ago by Julianus Pfeuffer <[email protected]>
fix lint

bf468c314b01205e042d092c0f90e1268fc4c6e1 authored about 2 years ago by GitHub Linter <[email protected]>
Merge branch 'develop' into NASE_charge_fix

2cc575f1b908bec1a8243eb7ca6f8a7ef869693d authored about 2 years ago by Samuel Wein <[email protected]>
Merge pull request #6308 from OpenMS/fix/abibuilderURLs

[FIX] update abibuilder urls

6fe57740e67feefccb64500d6cafcf7387e062a4 authored about 2 years ago by Julianus Pfeuffer <[email protected]>
[nop] Added documentation for some NASequence functions that needed it.

3b919f9e7fa4dc467c426825244be2bb810cc57a authored about 2 years ago by Samuel Wein <[email protected]>
pyopenms class doc link

fc7f0c3fefcb0f783de153f8cdba0ec65ead8efc authored about 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6309 from OpenMS/jpfeuffer-patch-1

[FIX] sync spectrumtype in pxd

959e0d585ae64fe99ca5833307abd7d59e582b81 authored about 2 years ago by Julianus Pfeuffer <[email protected]>
some cleanups (boost bind)

a5c43405dca2b06bda6c1caa6c825544508955de authored about 2 years ago by jpfeuffer <[email protected]>
Update test000.py

3417a8bda5a6e38694430504eb821bde2f6ed7ff authored about 2 years ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into fix/syncIDQuantPLFQ

16f9fc412b75cfcf74d954a10d789340956876e5 authored about 2 years ago by jpfeuffer <[email protected]>
sync spectrumtype in pxd

see https://github.com/OpenMS/pyopenms-docs/issues/294#issuecomment-1222537883

60d0a40bc498cee3f47b9926933df1b804b3b3cd authored about 2 years ago by Julianus Pfeuffer <[email protected]>
[FIX] update abibuilder urls

7b4d901d0da2ff360bcfabdf83a5a53662513000 authored about 2 years ago by Julianus Pfeuffer <[email protected]>
Huge refactor and fixes

1ed9ca0e9a047331368a15c2f381c2067a1ebbf8 authored about 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6285 from dmccloskey/fix/DDAUpdates

feat: updates to DDA spectral extraction

ac15cedb4540aa505458d5139a49e45fd2ba2309 authored about 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into maxquant-output

433fd9eeedf591dbd9380e9ee7c12efd5647824b authored about 2 years ago by Chris Bielow <[email protected]>
Update pyopenms-wheels.yml

ffc1c10476e268d93ccc6da6e517a52be9b29aaf authored about 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6302 from StefanBruens/fix_wm5_linking

Correct libOpenMS linkage to libWm5Core

3fdc712f7428e8bfdcd899e13a73d82b660d7858 authored about 2 years ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into fix/DDAUpdates

00acf8c3b72af87c83308c4461a2a066fc5d36fb authored about 2 years ago by Timo Sachsenberg <[email protected]>
Correct libOpenMS linkage to libWm5Core

The typo caused libOpenMS not being linked to libWm5Core, but only to
libWm5Mathmatics (twice),...

c6ae4a42311fc57e1bcb8b00b98b7289b90efb73 authored about 2 years ago by StefanBruens <[email protected]>
Update openms-ci.yml (#6300)

* Update openms-ci.yml

try to update install qt action (failing on mac) to v3

* Update ope...

c292bf1666e25d2b7cc9325ec766ce7af929f324 authored about 2 years ago by Timo Sachsenberg <[email protected]>
improve conda badges

715e6551086ca2317cb7312a985d10a6410f6aa8 authored about 2 years ago by Julianus Pfeuffer <[email protected]>
add opensource logo

699f51b0b91ac2802fa3f3fab295f0877ca622cf authored about 2 years ago by Julianus Pfeuffer <[email protected]>
nop

b2801bd0537d291f2bd8f231991db9e6aea152ee authored about 2 years ago by Timo Sachsenberg <[email protected]>
nop CI

d9f33f90937e84350ab84cfbb7b9f63d57242c89 authored about 2 years ago by Timo Sachsenberg <[email protected]>
nop CI

be6976ebe95b99c8a62eabeadfcc987c29c06beb authored about 2 years ago by Timo Sachsenberg <[email protected]>
Build version 14082022 - bug fixed

9633a7370dba446bcd7a6dd0ae1bc3a6c48d27b3 authored about 2 years ago by kyowonjeong <[email protected]>
refactor PLFQ to work on consensus

291beb9c580ec4c7a9310249876fff5fab2a3e2e authored about 2 years ago by jpfeuffer <[email protected]>
Merge branch 'develop' into timosachsenberg/filefilter-added-6138

5f06e443db5003e04ae5a5ca1f5b57b54045f8a2 authored about 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into maxquant-output

72e5321085a395e601518d999a4d5f8710d32daa authored about 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into feature/OswImCalibOutput

c1294f3b356dfda9c63d774ea7e0b7f3ce15977f authored about 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into feature/MSP_spectral_matching

c0a37b0e98236fc8fa2cbd222560a37019666a51 authored about 2 years ago by Timo Sachsenberg <[email protected]>
small comments

9654df53d68db2af9285bd0dc17bca8d01f3a0f2 authored about 2 years ago by jpfeuffer <[email protected]>
Merge branch 'develop' into fix/DDAUpdates

2e868517375dc649c1fd3acb94e5e6ae675539b2 authored about 2 years ago by Timo Sachsenberg <[email protected]>