github.com/OpenMS/OpenMS commits | Ecosyste.ms: OpenCollective

[FIX-#483] fixed problem when finding share from OpenMS mac package

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10598 6adb6...

64c3719e032e09275a45611486ecce346d5af0aa authored almost 12 years ago by Stephan Aiche <[email protected]>

[INTERNAL] native eol style for OpenMSBuildSystem_externalLibs.cmake

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10597 6adb6...

c7e6cf351807c657b65f2001f2476b2c8d417a01 authored almost 12 years ago by Chris Bielow <[email protected]>

[FEATURE] * suffix of TOPPAS output files are now named after edge file type restrictions if unambiguous assignment is possible. Otherwise, file content will be inspected as before.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10596 6adb6...

f8ff22ca23b04fb55b2b68cd9f3622192ab1a7b6 authored almost 12 years ago by Chris Bielow <[email protected]>

[FIX-#483] correctly install new app bundles with drag'n'drop installer

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10595 6adb6...

d9b57954b5e6f4c260b422482c652afa6718da2e authored almost 12 years ago by Stephan Aiche <[email protected]>

[FIX] fixed checker error in File.h

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10594 6adb6...

a1bc5db530d90652c600dc1455b491bf3db7ee46 authored almost 12 years ago by Stephan Aiche <[email protected]>

[NOP] fix_dependencies script now ignores app bundles since we handle them elsewhere

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10593 6adb6...

bdd615cfd0cb89f9a92c07106c1e5ba2a991c352 authored almost 12 years ago by Stephan Aiche <[email protected]>

[INTERNAL] extended File::getOpenMSDataPath(); it now caches the found data path and also probes paths relative to the executable (on os x)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10587 6adb6...

e8a7534978a8f0c2c82019a66fd6af37e06d3b8e authored almost 12 years ago by Stephan Aiche <[email protected]>

[BUILD] GUI apps are now build as real bundles on os-x

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10586 6adb6...

6fdc1bab3c03bbcdc69fca4f0e6c63840452d8bf authored almost 12 years ago by Stephan Aiche <[email protected]>

[DOC] added warning regarding mac compilers to the install page

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10585 6adb6...

76e195e4d523932910f8a4c7bd90de38ff1eab91 authored almost 12 years ago by Stephan Aiche <[email protected]>

[FEATURE,API] added File::findExecutable method and integrated it into TOPPAS&co to find the tools to execute

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10583 6adb6...

c22a75d9d9a8412b311a8914b177d1a9dccb9f76 authored almost 12 years ago by Stephan Aiche <[email protected]>

[DOC] some documentation updates for mac osx

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10582 6adb6...

e3b775aee31ce0239a01292d92a7fd3cfd5f8474 authored almost 12 years ago by Stephan Aiche <[email protected]>

[TEST] fixed failing test (numerical instability)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10581 6adb6...

c51470cc8f3dc11f8273d8068d12045e36e74f5c authored almost 12 years ago by Hendrik Weisser <[email protected]>

[FIX] * sensible charge default for MassCalculator which actually results in non-empty default output

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10580 6adb6...

56b58d0ceeb09029bf2dc2b6d47bc1449d85e5cd authored almost 12 years ago by Chris Bielow <[email protected]>

[FIX] try-catch block for parameter parsing in TOPP tools, such that

"Filefilter -in somefile.mzML -level 2 Toni_20121101_GM_70_Cel_pSILAC_0h_03_MS2.mzML.gz" etc
will...

7b0af6f0fe6d76c09c05acab2e74a4fa882683dc authored almost 12 years ago by Chris Bielow <[email protected]>

[FEATURE] sensible TOPPAS filenames when multiple input directories but identical filenames in them

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10578 6adb6...

bc448dcc237170158d9deb9d2593478a5c21b49d authored almost 12 years ago by Chris Bielow <[email protected]>

[FIX] * adapted MyriMatch parameter set (ProteinSampleSize is invalid parameter now)

* made storing of temp files for MyriMatchAdapter and XTandemAdapter more robust and verbose

gi...

03865686b7c96e5c8b14dceafc2e5d8d53242793 authored almost 12 years ago by Chris Bielow <[email protected]>

[FIX] MyriMatchAdapter now correctly reports if myrimatch failed

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10576 6adb6...

98d3e26d50c90ced14fa8de7275b0eff38d71462 authored almost 12 years ago by Chris Bielow <[email protected]>

[INTERNAL] minor changes to MyriMatchAdapter (debug output, code efficiency)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10575 6adb6...

8ae806557a1ff8d8de2e8c2cfc948572ef79d082 authored almost 12 years ago by Chris Bielow <[email protected]>

[FIX] changing recycling mode in TOPPAS leads to unneccessary pipeline abortion and does not trigger file-change indicator -- fixed now

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10574 6adb6...

2f282632bd3278e8c2e7b11b705e10da1d23ee4c authored almost 12 years ago by Chris Bielow <[email protected]>

[INTERNAL] cleanup of boost package finding (VC toolset is now explicitly supported)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10573 6adb6...

ee05a0197acb27a8de10980173bdfff0a7a2d4bc authored almost 12 years ago by Chris Bielow <[email protected]>

[DOC] * typo

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10572 6adb6...

8b4b9189cdcaeacf1312790f9b85e9911505044c authored almost 12 years ago by Chris Bielow <[email protected]>

[DOC] * some words on OpenMP and Win64 for VS express

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10571 6adb6...

683f8918c5044592725fc9a43e8b4fe5668c6ed2 authored almost 12 years ago by Chris Bielow <[email protected]>

[DOC] updated installation instructions for Windows

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10569 6adb6...

7db294bd81b4b40f7ea90c95161dc2094dac071c authored almost 12 years ago by Chris Bielow <[email protected]>

[FIX] fixed some more cppcheck warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10568 6adb6...

cd29063d0d7bdddc4402480f8d9ef3898a780fe2 authored almost 12 years ago by Stephan Aiche <[email protected]>

[INTERNAL] * allow more boost versions

* fix compile warning

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/...

3f4e18730f9a1d9be49e3b87e594442cd1a778d8 authored almost 12 years ago by Chris Bielow <[email protected]>

[FIX] fixed lots of checker warnings/recommendations

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10566 6adb6...

0ef96e312c6a88ff58fb5771b2e4a190c85fb2ca authored almost 12 years ago by Stephan Aiche <[email protected]>

[NOP] commited some leftovers

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10565 6adb6...

85f17bbfcd5bc8ef78b2ff61ccee6ae9c75bbdf6 authored almost 12 years ago by Timo Sachsenberg <[email protected]>

[FIX,INTERNAL] fixed wrong parameter in XIC tool

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10564 6adb6...

ca08c0fe0d7317ac3f335c1d2eadcd2b9b686656 authored almost 12 years ago by Timo Sachsenberg <[email protected]>

[FIX, INTERNAL] use different baseline for ppm calculation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10563 6adb6...

48a2898a3413cd5824f7bdcf591e1e306949fee6 authored almost 12 years ago by Timo Sachsenberg <[email protected]>

[INTERNAL] * removed unused empty functions in TOPPASBase

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10562 6adb6...

4a8073195d5dde6793e8ff396659d5ce23546562 authored almost 12 years ago by Chris Bielow <[email protected]>

[FIX, TEST]

* fixed wrong -write_ini behaviour introduced in r10517
* added tests for -write_ini with -ini
...

403e369c832c76edee0e185df8e091b6e68c339f authored almost 12 years ago by Chris Bielow <[email protected]>

SuperHirn algorithm explained (a bit at least)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10560 6adb6...

5f6a4d2e77f992ed4effbfd87b7427e46b572f37 authored almost 12 years ago by Hannes Roest <[email protected]>

[FIX] removed lint/cppcheck errors.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10559 6adb6...

9e024d73a4bf744733d398ee5e66e0b4482c4a51 authored almost 12 years ago by Mathias Walzer <[email protected]>

[NOP] fixed some cppcheck warnings

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10558 6adb6...

58a8ac2cd43bb9a9f5bdfefbb3c9e74a9dd3c136 authored almost 12 years ago by Timo Sachsenberg <[email protected]>

[DOC,INTERNAL] typo fix, moved impl to .C

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10557 6adb6...

17aa1513d77356851aa182597301fe2aaf52329c authored almost 12 years ago by Chris Bielow <[email protected]>

[NOP] removed unused variables

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10556 6adb6...

35e94985b316e5b2adb45ba2ac9ce1985240c48a authored almost 12 years ago by Timo Sachsenberg <[email protected]>

[INTERNAL] cppcheck suggestions

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10555 6adb6...

1d96cfe7e32356e107a89f60481cf857efaecb9d authored almost 12 years ago by Hannes Roest <[email protected]>

[FIX] missing OPENMS_DLLAPI, duplicate include, conversion warning

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10554 6adb6...

8d285850cd5c312326946749d5104c47f730b5ba authored almost 12 years ago by Chris Bielow <[email protected]>

[DOC] * fixed duplicate section names which lead to duplicate section texts, no matter what is actually written (only the last instance counts)

* minor bold-face issues

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branch...

76ff3c66dd8760b435743c22680c92fad7e510ac authored almost 12 years ago by Chris Bielow <[email protected]>

[INTERNAL] building internal doc still introduces weird artifacts. Using brackets around (INTERNAL_ONLY) at least gives normal output -- unfortunately now the brackets are shown... but thats the least invasive solution for now.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10552 6adb6...

4884e8379e0de20bfd18c228cda739d644dbee0c authored almost 12 years ago by Chris Bielow <[email protected]>

[INTERNAL] remove HTML tag from Main.doxygen, since its shown explicitly with the latest doxygen version ... whyever that is

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10551 6adb6...

dc64585d0ae3f856e6663307dfd204009390cc00 authored almost 12 years ago by Chris Bielow <[email protected]>

[INTERNAL] removing search window in doxygen (latest version is wasting lots of space)

* quote paths for doc_tutorial pdf targets (space in path issue)

git-svn-id: https://open-ms.sv...

190066af8c3c884dc9686dfef8b47da021e488c4 authored almost 12 years ago by Chris Bielow <[email protected]>

[INTERNAL] removed pptx

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10548 6adb6...

d17eb38305b3281da9c6c0a8b26ec90fcd6fdc33 authored almost 12 years ago by Chris Bielow <[email protected]>

[FIX] quoted directories to avoid error when source or binary install directory contains spaces

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10547 6adb6...

855d9669a5457f779bbfa1c2824995bbab949cd3 authored almost 12 years ago by Chris Bielow <[email protected]>

[NOP] missing property (EOL)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10546 6adb6...

97106d38021798caf6eff962ef484183e55eed1f authored almost 12 years ago by Chris Bielow <[email protected]>

[FEATURE] proposal on how OpenMS 2.0 interfaces could be used in algorithms

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@10545 6adb6e08-d915-0410-...

b721a1159d3ee93e0c9f6ccc5b8bb5d7a60abab0 authored almost 12 years ago by Hannes Roest <[email protected]>

[FEATURE] add first proposal for OpenMS 2.0 interfaces

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@10544 6adb6e08-d915-0410-...

f6f83e8c92f3b85766a607006f1f0cf2a1b3312b authored almost 12 years ago by Hannes Roest <[email protected]>

[TEST] add tests to SuperHirn to increase test coverage

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10543 6adb6...

8681c5ceeaa3c6a2a7c10c5cb601a7c836e531cc authored almost 12 years ago by Hannes Roest <[email protected]>

[INTERNAL] move test file, add one more test with different parameter

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10542 6adb6...

b3305f6cee6f9825422d6dbe7ca2f9a964f46e01 authored almost 12 years ago by Hannes Roest <[email protected]>

[INTERNAL] implement cppcheck style suggestions

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10541 6adb6...

60b5a7591c2ba6e4f3595eb32432f19e26bce671 authored almost 12 years ago by Hannes Roest <[email protected]>

[INTERNAL] remove overly verbose statement when in non-debug mode

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10540 6adb6...

96e3693f0c9e3edd01b9ad8ac7b59f32c88b0689 authored almost 12 years ago by Hannes Roest <[email protected]>

[NOP] removed some unused variables

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10539 6adb6...

1723bb2574a25bb2327704889c1cca7f19386fe4 authored almost 12 years ago by Timo Sachsenberg <[email protected]>

[NOP] reduced scope of some variables

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10538 6adb6...

6689997ea866e9a4518f917b0d7628b3f91ce271 authored almost 12 years ago by Timo Sachsenberg <[email protected]>

[FIX] fixed missing OPENMS_DLLAPI in CVTerm for win builds

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10537 6adb6...

f3f43076b744387be4d5cecb96d1b261593a3ea5 authored almost 12 years ago by Stephan Aiche <[email protected]>

[FIX] fixed segfault due to initialization order of static members; added assignment-conversion operators to DataValue

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10535 6adb6...

a6a3b87f2a9968036533e3eac24bccca49b79821 authored almost 12 years ago by Stephan Aiche <[email protected]>

[FIX] fixed unused argument warning in MzMLHandler

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10534 6adb6...

1ef860fad72b4d33d737af8270c5252bfd34fc72 authored almost 12 years ago by Stephan Aiche <[email protected]>

[FEATURE,FIX-#471] implemented correct carrying over of units when reading/writing mzML files

* mzML files now use only tabs to indent the xml tags
* moved CVTerm code from h to C
* remo...

4d4de909399ac42d2f0a8da6418403ae3511f9f5 authored almost 12 years ago by Stephan Aiche <[email protected]>

[FEATURE] DataValue can now also carry information about its unit

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10532 6adb6...

919a9fa757f0dec50415afef578997652df6fe79 authored almost 12 years ago by Stephan Aiche <[email protected]>

[NOP] updated uncrustify.cfg to avoid breaking if one-liners

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10531 6adb6...

95f2d6ae483fd5260157f880f7e6e7ca5ef7f619 authored almost 12 years ago by Stephan Aiche <[email protected]>

[RESOURCE] updated the units ontology, now fewer warnings when semantically validating

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10530 6adb6...

907aff5149d224441983ae2898df932ca5b49d39 authored almost 12 years ago by Mathias Walzer <[email protected]>

[FIXED-#458,TEST] Changes for annotation of modifications in MRMDecoy

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10529 6adb6...

4661cd137d6d1d280bec8b13d9664cbee62a9dd8 authored almost 12 years ago by George Rosenberger <[email protected]>

[FIX] INIUpdater now works with TEMP path containing spaces

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10528 6adb6...

c1618da42e47b8cc968eec89c85c84aef6a370c4 authored almost 12 years ago by Chris Bielow <[email protected]>

[FIX] wrong parameter escaping introduced in [10522]

switching from system() to QProcess for fix.
here's the doc of system() for Windows (case 2 sudde...

5ab871f591796d79238acd6e82c0095530ced94a authored almost 12 years ago by Chris Bielow <[email protected]>

[FIX] IDFileConverter did not work for Mascot XML due to wrong file type restriction.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10526 6adb...

9136343e8032c31f363598049b429f579076524b authored almost 12 years ago by Johannes Veit <[email protected]>

[FIX? FEATURE?] added max_hits parameter to MascotAdapterOnline (server-sided XML export setting)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10525 6adb...

14eef0378046cf2585c8aa094bcd0aa6151a3141 authored almost 12 years ago by Johannes Veit <[email protected]>

[FIXED-#471,#484] Extended MzMLHandler to handle CVParams more generic (yet according to the mapping rules). Tradeoff with writing speed, improvement would require some restructuring, TODO for next release, see #500.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10524 6adb6...

d4bfe40c4f1cb1c667f7dec1957c00cb732fe254 authored almost 12 years ago by Mathias Walzer <[email protected]>

[FIX] OMSSAAdapter did not work on UNIX when path to database file contained spaces.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10523 6adb...

54bd0e9f439c95412580b73d4762cbc5cc7423bf authored almost 12 years ago by Johannes Veit <[email protected]>

[FIX] tmp dir name with spaces did not work in TOPPAS

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10522 6adb...

0be9744a7ed373c76ba78a6599c1211024143196 authored almost 12 years ago by Johannes Veit <[email protected]>

[FIX] fixed some cppcheck warnings in IDPosteriorProbability, SuffixArrayTrypticCompressed, and DetectabilitySimulation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10521 6adb6...

4cb5c8bffc32b22f7e0ef33804c479ef132b9a38 authored almost 12 years ago by Stephan Aiche <[email protected]>

[FIX] fix test after r10514 (fixes a double rounding issue)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10520 6adb6...

2a493ffdc155edeb757139087cce3fadc48bbd30 authored almost 12 years ago by Hannes Roest <[email protected]>

[FIX] fixed tests failing after psi-ms.obo update [10512]

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10519 6adb6...

772dedcf93c344a963e779493f88ca3a5a554923 authored almost 12 years ago by Stephan Aiche <[email protected]>

[FIX,FEATURE] improved handling of Parameters in TOPPBase

* TOPPBase now has a clear hierarchy of loading and using parameters with cmd-line on top and d...

0a9aa2ea71e7c28455344421675feac79a125a08 authored almost 12 years ago by Stephan Aiche <[email protected]>

[FIX] fix TraML modification location (start counting with 1), add N/C terminal mods

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10514 6adb6...

04d6a733ea47928a5bb023e9ce1d7456bbf138ef authored almost 12 years ago by Hannes Roest <[email protected]>

commented out an unused variable

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10513 6adb...

777a01dac3d221eda0efd19895fe5047836d1118 authored almost 12 years ago by Oliver Kohlbacher <[email protected]>

[FIX] updated psi-ms.obo getting rid of the handlerwarnings about differing parent (cv) term names

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10512 6adb6...

80fb35df646cdd4c2c601d4e09ea433f59a05027 authored almost 12 years ago by Mathias Walzer <[email protected]>

[INTERNAL] removed ITRAQ_DEBUG

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10511 6adb6...

67e9397390348169781ba4466e2d89fca4b43d99 authored almost 12 years ago by Chris Bielow <[email protected]>

[FIX] checker error and initial draft of potential macro to filter warnings from tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10510 6adb6...

da325f07f0ca60783fb0292aadce40ce42e568d4 authored almost 12 years ago by Chris Bielow <[email protected]>

[NOP] fixed license header checker problems

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10509 6adb6...

605b8ae099b4fcedbca2a01d216019a2502ad404 authored almost 12 years ago by Stephan Aiche <[email protected]>

[NOP] * added EOL-STYPE to QApplicationTOPP

* checker.php reports offending line for license header in debug mode now

git-svn-id: https://...

03c9ad4b45e413fd13ba155ac2e35f51044dbc2a authored almost 12 years ago by Chris Bielow <[email protected]>

[FIX-#498] OMSSA now handles filenames and path with spaces on windows

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10507 6adb6...

b02928c128b28949f4df972dbeb5c96cb0b37169 authored almost 12 years ago by Timo Sachsenberg <[email protected]>

[FIX,INTERNAL] ItraqQunatifier now fails if an identity matrix is given as isotope correction matrix

* further the default values/documentation for TMT- and ITRAQAnalyzer was improved
* improv...

12d4eefc9f56488abc2fab2cdd9fddd9bc86b8ec authored almost 12 years ago by Stephan Aiche <[email protected]>

[FIX] add forgotten file in previous commit

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@10505 6adb6e08-d915-0410-...

d5b9ca88bf72ccaa8d43504e30f3fceca5fca12d authored almost 12 years ago by Hannes Roest <[email protected]>

[DOC] added TMTAnalyzer to TOPP docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10504 6adb6...

d24bf500bc3dbec6ae4100fca7fee33d35abce6d authored almost 12 years ago by Stephan Aiche <[email protected]>

[DOC] removed references to iTRAQ/TMT from TMTAnalyzer/ITRAQAnalyzer params

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10503 6adb6...

db3a417e5d51255ec7ee635c761c3d7ff1de6e43 authored almost 12 years ago by Stephan Aiche <[email protected]>

[FIX] addendum to [10481]

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10502 6adb6...

1458189428654639fa563e8ce9b8152a06bfe0e4 authored almost 12 years ago by Stephan Aiche <[email protected]>

[INTERNAL] removed TOPPAS debug output

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10501 6adb6...

e27a828ad4f65a629ff4b56c11bf29cf7ca52796 authored almost 12 years ago by Chris Bielow <[email protected]>

[INTERNAL] move the GaussFilter algorithm to its own class

- separate the GaussFilter algorithm that works on iterators from the
wrapper that feeds chrom...

f8921cd920ec5c96bceed336f5a0786b4b29235c authored almost 12 years ago by Hannes Roest <[email protected]>

[FEATURE] refactor GaussFilter to work on std::vector<double>

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@10499 6adb6e08-d915-0410-...

b6a6e8def278029bcaad91108a3671bc6d3c63b4 authored almost 12 years ago by Hannes Roest <[email protected]>

[FIX-#197] fixes (progress, and -> &&)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@10498 6adb6e08-d915-0410-...

4ddc14ee04d5cdf9363eee0297e7cb775e43dcdc authored almost 12 years ago by Hannes Roest <[email protected]>

[DOC] include more documentation for OpenSwath tools

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10497 6adb6...

9b58ca4ebbcd50013ba166a40263f9cb353f3c61 authored almost 12 years ago by Hannes Roest <[email protected]>

[FIX-#197,FEATURE] Allow chromatograms as input for the PeakPickerHiRes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@10496 6adb6e08-d915-0410-...

bd85f8b3119205e4aa822773bcecd5a0c8cd2aeb authored almost 12 years ago by Hannes Roest <[email protected]>

[FIX-#197,FEATURE] Allow chromatograms as input for the two NoiseFilters

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@10495 6adb6e08-d915-0410-...

15f4feee91dc74c2560f302f925c1fd7a1462ab8 authored almost 12 years ago by Hannes Roest <[email protected]>

[FIX] removed reminiscent name space

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10494 6adb6...

2fb233611310ab2e767874d03fc0f817b22a965e authored almost 12 years ago by Chris Bielow <[email protected]>

[NOP] extended EmpiricalFormula test to contain isotopes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10493 6adb6...

7bbba0e5b752a91f132c013a9766bf842d53f5f6 authored almost 12 years ago by Timo Sachsenberg <[email protected]>

[INTERNAL] revert last accidental commit

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10492 6adb6...

d571f958f6ccd80784ade18405af99d0bb96e36a authored almost 12 years ago by Chris Bielow <[email protected]>

initial changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10491 6adb6...

cf75656141435af6cd579073eb3dcdef29e2e180 authored almost 12 years ago by Chris Bielow <[email protected]>

[FIX] fixed warnings in MzQuantMLHandler as well as some cv issues and updates for conformity with the latest schema changes.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10490 6adb6...

85d40dfd201640bc31e7e8af8d5ddb43028bd876 authored almost 12 years ago by Mathias Walzer <[email protected]>

[DOC] doc'ed the important &

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10489 6adb6...

bbf19e93b7544efbef3bfe9ee0f628b2bf8918d3 authored almost 12 years ago by Chris Bielow <[email protected]>

[FIX] finally found the segfault in Qt

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10488 6adb6...

3cae5febbebba07bd26ddc30076d7eeeced43596 authored almost 12 years ago by Chris Bielow <[email protected]>

[FIX] even when disabled svn revision sometimes causes rebuild of VersionInfo.C. this fixes it.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10487 6adb6...

53ad7603de8210c589e7ad112bad47fba322e73e authored almost 12 years ago by Chris Bielow <[email protected]>