github.com/OpenMS/OpenMS commits | Ecosyste.ms: OpenCollective

[BUILD,DOC,FIX-#507] TOPPDocumenter now expects the path to the executables and can generate doc for TOPPView/TOPPAS on mac osx

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10704 6adb6...

ea566248aa7bd095e45e2be77d537b63bff45c77 authored over 11 years ago by Stephan Aiche <[email protected]>

[BUILD,FIX-#506] added custom info.plist containing the path to OMSSA/XTandem for the GUI tools

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10703 6adb6...

aa72cb8563730600064d64bc5e19689f661957b7 authored over 11 years ago by Stephan Aiche <[email protected]>

[BUILD] generated knime plugins now get the date of the last change as 4th version part instead of the SVN revision

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10702 6adb6...

c723359885cf916cd7b90896b50b28c9697b3d41 authored over 11 years ago by Stephan Aiche <[email protected]>

[UNFIX] reverse-merged r10700:10699

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10701 6adb...

a64a711dc42e1924427ee11cbb27caa866342048 authored over 11 years ago by Johannes Veit <[email protected]>

[FIX] hopefully fixed finding bundled search engines (concerns MacOS binary installer)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10700 6adb...

ae04d1337a682ad7ebcb1cddfe8dc592ee530193 authored over 11 years ago by Johannes Veit <[email protected]>

[FIX, FEATURE] * fixed segfault in TOPPView (infinite loop on event-handler caused by extra QApplication::processEvents(); lead to stack-overflow)

* "Annotate with Identification" now reports that its finished and reminds the user to open the ...

b785e50cd74b40ce27821a3f0079ee9b631cfe04 authored over 11 years ago by Chris Bielow <[email protected]>

[FEATURE] some minor stats on IDMapper for peaks

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10698 6adb6...

5e6f3079e165ac08e4a25dc896954605acc4005b authored over 11 years ago by Chris Bielow <[email protected]>

[INTERNAL] compiler warning fixed

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10697 6adb6...

2f39d36a865520e52df5e73139f071ca615e9757 authored over 11 years ago by Chris Bielow <[email protected]>

[FIX] Open in TOPPView -> single window does not work when path contains spaces

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10696 6adb...

da34b0c0071f6dfe86195fe5481838cdfd0a3673 authored over 11 years ago by Johannes Veit <[email protected]>

[DOC] minor typos...

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10695 6adb6...

3956b3696fcf68d7d05a5743ffef18117b7e9f8c authored over 11 years ago by Chris Bielow <[email protected]>

[FIX] added missing dependency to KNIME creation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10694 6adb6...

d11e10819c09dc689f6e430d4515197527fdacc6 authored over 11 years ago by Stephan Aiche <[email protected]>

[FIX] QC:the accuracy plot looks nicer that way

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10693 6adb6...

7b3c45e0efc7624ff0ab13adb350210c8d81ae80 authored over 11 years ago by Mathias Walzer <[email protected]>

[FIX] QC: fixed delta ppm calc - removed std::abs

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10692 6adb6...

56dc964b76841645fc219938b3870df9b506b521 authored over 11 years ago by Mathias Walzer <[email protected]>

[FIX] QC: several errors in cv and stats corrected.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10691 6adb6...

58b775296baf0438647728f631a7357af157a3ac authored over 11 years ago by Mathias Walzer <[email protected]>

[FIX] name parameter in QCTools is now a string instead of input-file parameter; see [10689]

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10690 6adb6...

7028f1331e03f8acb59c8354e4f52200e64b0b76 authored over 11 years ago by Stephan Aiche <[email protected]>

[FIX] changed TOOL parameter settings for pipeline convenience.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10689 6adb6...

1b28d874c505b453774e973d36036d7bb8784f42 authored over 11 years ago by Mathias Walzer <[email protected]>

[FIX] added set functionality to qcml, added plots, updated cv terms.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10688 6adb6...

113c49d01677f7f03343ce7cd542d83c99b351ee authored over 11 years ago by Mathias Walzer <[email protected]>

[FIX] fixed TOPPAS "Open in TOPPView" on macosx

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10687 6adb6...

a6300cbac1848a51c1f65ad0d7bb824416cc70f1 authored over 11 years ago by Stephan Aiche <[email protected]>

[FIX, INTERNAL] proper reporting of multiple ambigous modifications in RNPxl

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10686 6adb6...

f23d97ef38505480555afe24c3a91f9c1f0d60f8 authored over 11 years ago by Timo Sachsenberg <[email protected]>

[FEATURE] FileFilter now supports filtering by MS2 precursor

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10685 6adb6...

faa4dcbadcc05784a56fcf8ca298003db2e57b49 authored over 11 years ago by Chris Bielow <[email protected]>

[FIX] another fix for the mac installer, fixed finding executables from installed bundles

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10684 6adb6...

2d121c4df6c18f13e23009df1f2f306495404142 authored over 11 years ago by Stephan Aiche <[email protected]>

[FIX, INTERNAL] remove SpectrumSettings identifications if Annotate With Identifications is called

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10683 6adb6...

1140e717d565381c1b23580be250392b960450f2 authored over 11 years ago by Timo Sachsenberg <[email protected]>

[FIX] bug introduced in r10681

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10682 6adb...

3d2a3a4ae4cfb8ed07cd5f1e17b97fe0ad829b4b authored over 11 years ago by Johannes Veit <[email protected]>

[FIX] TOPPAS could not create TOPPAS tmp dir when OpenMS tmp dir contains spaces

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10681 6adb...

320a8bc842909d1971c05bfb7cab7c776765243f authored almost 12 years ago by Johannes Veit <[email protected]>

[FIX, INTERNAL] detect and report mass ambiguities in nucleotide sequence generation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10680 6adb6...

325263737e9cdeaa25b68782e8848d84cc5d73b4 authored almost 12 years ago by Timo Sachsenberg <[email protected]>

[FIX-505] goto dialogs now act with error tolerance

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10679 6adb6...

2c5bf9a3dbdd022aa1b5dfa56eace479715259b7 authored almost 12 years ago by Chris Bielow <[email protected]>

[INTERNAL] don't print target sequence if no sequence is specified

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10678 6adb6...

a543081dc983a599d8b5dedf3acc11de3322cba2 authored almost 12 years ago by Timo Sachsenberg <[email protected]>

[FIX] TOPPView: save visible data will not export empty MS2 precursors which are outside the view-area

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10677 6adb6...

efa133767213014e2e8e880287db9d0cd7ed21ea authored almost 12 years ago by Chris Bielow <[email protected]>

[BUILD] some more updates to the knime package preparation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10676 6adb6...

8e1c7be592ecbc66aac2d8df22588f11d7dc176e authored almost 12 years ago by Stephan Aiche <[email protected]>

[DOC] added description of modification behavior of MA-Identification

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10675 6adb6...

7429b7a319348f978d567e5d5cfea61bf6743102 authored almost 12 years ago by Chris Bielow <[email protected]>

[BUILD,FIX] added REQUIRED statement to find java in compress payload script

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10673 6adb6...

6c5c3a3f73655a0111dd5e69a04fd228643990df authored almost 12 years ago by Stephan Aiche <[email protected]>

[BUILD] ouput path for knime plugin sources is now configurable

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10672 6adb6...

e853a41f01c702e507ab274b93cf6c7faf403e02 authored almost 12 years ago by Stephan Aiche <[email protected]>

[BUILD] improved generated version of OpenMS knime package

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10671 6adb6...

f4fa558b9ef03f201c5dfdbd5853bf68b5eb3370 authored almost 12 years ago by Stephan Aiche <[email protected]>

[BUILD] added DESCRIPTION, COPYRIGHT, and LICENSE files to output of prepare_knime_package

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10670 6adb6...

2062c4f2b6a35e25abf2a670f2a3c5bf9627d3cf authored almost 12 years ago by Stephan Aiche <[email protected]>

[FIX-#504] Fixed XTandemXMLFile loading when no encoding is given by XTandemXML file by enforcing ISO-Latin-1 (default would be utf-8, breaking the aminoacid sequence readin). Introduced enforceEncoding(encoding) to XMLFile.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10669 6adb6...

c7d5a916392ccefdd1e1543259ace7c7a1a9b3a8 authored almost 12 years ago by Mathias Walzer <[email protected]>

[DOC,FEATURE] icon for IDEvaluatorGUI added (thx to Stephan for designing). Internal FAQ extended.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10668 6adb6...

ab65f186b698e97e7a5814018acac001c1021f59 authored almost 12 years ago by Chris Bielow <[email protected]>

[TEST] added a test for a bug caused by missing encoding infomration in xtandem files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10667 6adb6...

7c2cba7c847fa9949a61207d7164e9fb359f4443 authored almost 12 years ago by Timo Sachsenberg <[email protected]>

[INTERNAL] tools in ToolHandler now in correct order

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10666 6adb6...

0d319aff5b3e765046b63922abc0038c460458e6 authored almost 12 years ago by Chris Bielow <[email protected]>

[FIX] added IDEval to ToolHandler

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10665 6adb6...

f0ab7792c5f276d46d8c30c251fbd9c08c23abcd authored almost 12 years ago by Chris Bielow <[email protected]>

[DOC] IDEvaluator fixed in UTILS docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10664 6adb6...

de10084eb452aebf7b804c8694a98614e699ff0e authored almost 12 years ago by Chris Bielow <[email protected]>

[FIX,BUILD] fixed error in finding icns icons for macosx app bundles

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10663 6adb6...

aa65ef7061319c2ce286d1e8427f62a63f250355 authored almost 12 years ago by Stephan Aiche <[email protected]>

[FEATURE] split IDEvaluation into IDEvaluator and IDEvaluatorGUI (icon is TO DO)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10662 6adb6...

9bc6ee4c7c59a1b590556aa9d11196b1cb677dbd authored almost 12 years ago by Chris Bielow <[email protected]>

[INTERNAL] new param for TOPPBase C'tor

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10661 6adb6...

55867096c3dca672ccb352fd6bfac04c271a0351 authored almost 12 years ago by Chris Bielow <[email protected]>

[FIX] for bug introduced in r10657

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10660 6adb6...

ebaf13cdbd7239409dbd8a17e11424e8e641c500 authored almost 12 years ago by Hannes Roest <[email protected]>

[INTERNAL] cleanup of unnecessary MacOS icons

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10659 6adb6...

ed122c5f30f5a027868e0d147a64611c88cafdfd authored almost 12 years ago by Chris Bielow <[email protected]>

[FIX] bugfix for N-terminal modifications

allow -1 for N-terminal modifications

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/o...

a1da8fbdbc71aa2738c2fa692bcdf8ed8186b792 authored almost 12 years ago by Hannes Roest <[email protected]>

[INTERNAL] fix warnings for casts

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10657 6adb6...

faae76690207df8a446c45fb5cffe346c0b4959d authored almost 12 years ago by Hannes Roest <[email protected]>

[BUILD,FEATURE] automatic preparation of knime packages

incl
* search engines,
* binaries,
* descriptors (ctd, mimetypes.xml),
* icons
* creating c...

3914199aef0e6c24a93294de855537be42c81cb8 authored almost 12 years ago by Stephan Aiche <[email protected]>

[INTERNAL] fix warnings (casting from int to size_t)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10655 6adb6...

12b7364853b3953d5021c362b0d1b3fb16887d6e authored almost 12 years ago by Hannes Roest <[email protected]>

[FIX] fix Windows linking error (introduced in r10648)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10654 6adb6...

ed9253a2038060a02d76e205697130ed1284ad33 authored almost 12 years ago by Hannes Roest <[email protected]>

[BUILD] further improvements to the KNIME package generation (especially windows); support to package the search engines is still missing

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10653 6adb6...

1a592d2c5e65048f695b9b46f36683e07d6832aa authored almost 12 years ago by Stephan Aiche <[email protected]>

[BUILD] improved KNIME package creation (preparing payload for the individual platforms)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10652 6adb6...

4b42febb426e398ff481cd1c81acba1948567506 authored almost 12 years ago by Stephan Aiche <[email protected]>

[FIX] added qc-tools from [10631] to ToolHandlder

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10651 6adb6...

74810aff91c9da9a1b4a65dd06288a33f860d895 authored almost 12 years ago by Stephan Aiche <[email protected]>

[FIX] TOPPAS pipeline update did not indicate invalid edges and may cause segfault during save() operation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10650 6adb6...

864418ac974c6605e8d370061c3bf65e84bc5d6a authored almost 12 years ago by Chris Bielow <[email protected]>

[FEATURE] add option to remove C/N terminal modifications from decoys

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10649 6adb6...

f18271c2a73759a1b406660aae41c97d83f30e32 authored almost 12 years ago by Hannes Roest <[email protected]>

[FIX] handle problem with C/N terminal modifications

- write method to convert TraML datastructure to AASequence that handles
modifications (includ...

a6e3ed12422acb054e8caeca10e45346c7159752 authored almost 12 years ago by Hannes Roest <[email protected]>

[INTERNAL] revamped parameters of RNPxlXXICFilter to old style

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10647 6adb...

374a4ca0bae7485a012d9d214ad7fe026858ef35 authored almost 12 years ago by Timo Sachsenberg <[email protected]>

[INTERNAL,DOC] add comments

- explaining why we cannot skip empty spectra as tried before (in r10606)

git-svn-id: https://o...

d3c5296aafe5699752690ff2f44542bc899efd41 authored almost 12 years ago by Hannes Roest <[email protected]>

[FIX] Logstream caches are not flushed at the end of a program, leading to incomplete messages.

* fixed incached output of modDB .. lots of messages otherwise

git-svn-id: https://open-ms.svn....

882036fa4ee3f41748970d07e6758f051f9b0975 authored almost 12 years ago by Chris Bielow <[email protected]>

[FIX] also add Quantification as data processing step for SuperHirn

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10644 6adb6...

941b86168605e1d1f80719f970ff4d41ce5bacbe authored almost 12 years ago by Hannes Roest <[email protected]>

[FIX] fix after r10638 to restore default behavior for spectra

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10643 6adb6...

c3521976544cd770d94f2ec486be249a8005ff38 authored almost 12 years ago by Hannes Roest <[email protected]>

[INTERNAL,VISUAL] cleanup chromatogram display code, fix potential memory leaks

boost shared pointer should be created as shared_ptr<T> p(new Y);

git-svn-id: https://open-ms.s...

3969ef18a208f49c493ba0820180fc28216794b9 authored almost 12 years ago by Hannes Roest <[email protected]>

[VISUAL,FIX] allow double click on chromatogram precursor

allows to use a double click on a chromatogram precursor in the
SpectraViewWidget and open all c...

44a67dfeae1192e50f0c9202d8649c608721b8eb authored almost 12 years ago by Hannes Roest <[email protected]>

[DOC] typos

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10640 6adb6...

ddf9c4401285292d3987b7e96c11bda8dfee960d authored almost 12 years ago by Hannes Roest <[email protected]>

[FIX] OpenSwathRewriteToFeatureXML: fixed correct output format and description for bug introduced in [10454]

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10639 6adb6...

e2f91bccc67504bbf14004ff4a30ea6bd213084e authored almost 12 years ago by George Rosenberger <[email protected]>

[VISUAL,FIX] correct axis labeling for chromatograms

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10638 6adb6...

21f3bfdcc12de3fb84bcb34bfc43b52def306a17 authored almost 12 years ago by Hannes Roest <[email protected]>

[DOC] SuperHirn docu pages

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10637 6adb6...

ae165287329d8027fe8f439a1b6615c4c78a22fa authored almost 12 years ago by Hannes Roest <[email protected]>

[FIX]fixed GenericWrapper and Rscript, still axis todos. Adapted QCExporter to previous changes.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10636 6adb6...

be06febc76bc1df555a17741db846e25fc2c4473 authored almost 12 years ago by Mathias Walzer <[email protected]>

added the rest of the needed cvs.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10635 6adb6...

764bbf7686bcb6ea8efe50530551e5e2d78d0e14 authored almost 12 years ago by Mathias Walzer <[email protected]>

added some cvs and calculation of tic median with OpenMS::Math functions.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10634 6adb6...

322522597ad947cf664a0deab1663d750136ba33 authored almost 12 years ago by Mathias Walzer <[email protected]>

[FIX]restructured QPs and added several calculations

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10633 6adb6...

a37b766ca60887ed557aadca69852c1ac0353b03 authored almost 12 years ago by Mathias Walzer <[email protected]>

[FIX]Added duplicate removal in merging scenario and corrected bug in runquality storing.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10632 6adb6...

fee79a129c573cffdd69bed56990ca2c5bcc899c authored almost 12 years ago by Mathias Walzer <[email protected]>

[FIX]resolved QCTools structure for more flexible and better pipeline construction.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10631 6adb6...

81be0eda1c57988d119e996a8358f0c9865b1d78 authored almost 12 years ago by Mathias Walzer <[email protected]>

[FIX] memory+time optimization for FFRaw (not loading MS2 spectra)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10630 6adb6...

54c8eb11450f991cd296bfaffdee1d5edf23539a authored almost 12 years ago by Chris Bielow <[email protected]>

[FIX] Calculate marker ion intensity based on maximum in tolerance window

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10629 6adb6...

d2b25363e28cc2f8646973dab4b06104c1fbd1a2 authored almost 12 years ago by Timo Sachsenberg <[email protected]>

[FIX] annotate proteins in csv of RNPxl

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10628 6adb6...

d6aaa0c08b2f8ec345eb83fd3c0b5f8a81b729e8 authored almost 12 years ago by Timo Sachsenberg <[email protected]>

[INTERNAL] refactoring of RNPxl for easier reporting

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10627 6adb6...

4bb915b1fb556433f597f058d57d99ae5f427a53 authored almost 12 years ago by Timo Sachsenberg <[email protected]>

[FIX] prevent printing of long sequences in RNPxl

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10626 6adb6...

75a247f9cf042357e342ce4992f6a2869626d89c authored almost 12 years ago by Timo Sachsenberg <[email protected]>

[FIX] * remove scrollbar for nicer images in IDEvaluation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10625 6adb6...

17b54f2c929ff46da73e3cb2650f96e28e3d663d authored almost 12 years ago by Chris Bielow <[email protected]>

[FIX] * correct call to Tutorial using F1 in TOPPView and TOPPAS

* OPENMS_DATA_PATH has no trailing directory separator anymore (due to a bug it used to have one...

3546b5d95d39523c66c498a8c28ae2e13ca583e4 authored almost 12 years ago by Chris Bielow <[email protected]>

[FIX] minor warning

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10623 6adb6...

e271fe0e0e0c0529b50b9c9f07bb63cd47e7b9d1 authored almost 12 years ago by Chris Bielow <[email protected]>

[FIX] don't enforece decoy peptides while indexing RNPxl files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10622 6adb6...

810f50c388e643f479edaa06357a0f05237793c4 authored almost 12 years ago by Timo Sachsenberg <[email protected]>

[FIX]corrected QcMLFile binary read-in

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10621 6adb6...

c8567babe90547eeb9aa09ec76d5e7b96e59b570 authored almost 12 years ago by Mathias Walzer <[email protected]>

[FIX] fixed a bug in RNPxl that occured if the restricting sequence is shorter than max length

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10620 6adb6...

84fbcebdc1a0ef46a93760532c32cfc733d50026 authored almost 12 years ago by Timo Sachsenberg <[email protected]>

[INTERNAL] cosmetic changes to ConsensusID

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10619 6adb6...

b74b6b3f02a617b45b8ca9389645642255cf1ff6 authored almost 12 years ago by Chris Bielow <[email protected]>

[FIX] compile error on linux

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10618 6adb6...

28fc20a57e7bc9f3c4d97ec976bd1f2e6784289f authored almost 12 years ago by Chris Bielow <[email protected]>

[FIX] of bug introduced in r10614; some minor cleanup

* TOPPAS reports node number in log window for each output section

git-svn-id: https://open-ms....

2088fc10b2f68360ca75693022a123f25bafbd4f authored almost 12 years ago by Chris Bielow <[email protected]>

added MS-QualityControl tools into the library

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10616 6adb6...

5d46866b35fa1588d62f529f946d4de5ccad8ce6 authored almost 12 years ago by Mathias Walzer <[email protected]>

[DOC] for Windows install

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10615 6adb6...

f700867827d3c3842c792fb010f6ff7c496558b2 authored almost 12 years ago by Chris Bielow <[email protected]>

[FIX] MyriMatchAdapter will fail gracefully when MyriMatch has empty resultset (and produces no pepXML)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10614 6adb6...

4a695132004fa78562f459290bfd50d82879e482 authored almost 12 years ago by Chris Bielow <[email protected]>

[BUILD] added missing omssa files (mods.xml and usermods.xml) to mac-knime-build script

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10613 6adb6...

d1f34db0811bd315841bc4d451659544fbba36d4 authored almost 12 years ago by Stephan Aiche <[email protected]>

[BUILD] improved ctd generation and added an automatic postprocessing script for mac osx to prepare the final knime package

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10612 6adb6...

66e36f9da2b18bb00c12f5f4cfaed4bb8ce9933e authored almost 12 years ago by Stephan Aiche <[email protected]>

[FIX] old CV params in mzML

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10611 6adb6...

72bdb59e5ea16e380d28a8432f84d4bb271ee0c7 authored almost 12 years ago by Timo Sachsenberg <[email protected]>

[FIX] reverted some MzML changes that broke cached files in OpenSwath

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10610 6adb6...

8ff03af175a9896a84bbb5303ee4ed993a71d803 authored almost 12 years ago by Timo Sachsenberg <[email protected]>

[FIX] fixed a bug introduced with yesterdays changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10609 6adb6...

7f03bd27698e683fae75dfea30b01c64955e7b01 authored almost 12 years ago by Timo Sachsenberg <[email protected]>

[FEATURE] improved generation of knime plugin sources

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10608 6adb6...

54a86c61a94298d71ef6b6070ee15ddeab4b3dcc authored almost 12 years ago by Stephan Aiche <[email protected]>

[FIX]corrected MzML writeout: skip empty chromatograms

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10606 6adb6...

3d7d314af14a87816d82f1035a6382de35539feb authored almost 12 years ago by Mathias Walzer <[email protected]>

[DOC] added some CHANGELOG additions

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10604 6adb6...

b9de0a9ffd5c59f2263216039d868256acb43e29 authored almost 12 years ago by Timo Sachsenberg <[email protected]>

[FIX-#503] added some more logic when opening the documentation from TOPPView/TOPPAS on mac osx systems

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.10@10600 6adb6...

d1f3c812e645fe34775bd102f3428468d5dc9aeb authored almost 12 years ago by Stephan Aiche <[email protected]>

[INSTALLER] improved mac os installer experience

* rename of TOPP-shell to TOPP Shell
* fixed problems with the finalize dmg step

git-svn-id: ...

ccfc2cba4060e3162d7b21158e3943c443f0dff6 authored almost 12 years ago by Stephan Aiche <[email protected]>