Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/OpenMS

The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS

[FIX] wrap MSSimulator

necessary change for pyOpenMS wrapping: use class instead of typedef

OpenMSKernel changed

git-...

26278c27ab1f4436234c22a2b58f07b6d226bdf7 authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] wrap MSSimulator

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11183 6adb6e08-d915-0410-...

513304e00e9e989054cc47218f727c048b85ba34 authored over 11 years ago by Hannes Roest <[email protected]>
[BUILD] Python checker update ignorefile

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11182 6adb6e08-d915-0410-...

77c9d814a03dc493e0d3eeef8434838a6ea7f136 authored over 11 years ago by Hannes Roest <[email protected]>
[BUILD] extend Python checker

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11181 6adb6e08-d915-0410-...

f6f3ea5a456e827204923859c81edc52f8b93575 authored over 11 years ago by Hannes Roest <[email protected]>
[BUILD] check return typee

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11180 6adb6e08-d915-0410-...

a7d9f29a9bde0f55c2f0d38bf4b651d8e3d46d94 authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] use a class instead of typedef

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11179 6adb6e08-d915-0410-...

738e62929f60b66b3c76795469b9eb23e4f9c6f8 authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] initialize RNG directly

OpenMSKernel changed

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@111...

1e50c1ac288052f4b3f4f8ee3b67167c23964717 authored over 11 years ago by Hannes Roest <[email protected]>
[FIX] forgotten file

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11177 6adb6e08-d915-0410-...

b31013ace840e0e031eaaa4a5712e7058ec743f6 authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] wrap more functions for pyOpenMS

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11176 6adb6e08-d915-0410-...

2def2c2978ae4e53c0917817cea350c3411eb1a6 authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] wrap TargetedExperiment, add tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11175 6adb6e08-d915-0410-...

08b09d39b3ac672866175df3eb7148ffb0fff15b authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] add PeptideIdentifications to Feature

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11174 6adb6e08-d915-0410-...

544b0527b0e66ec0c9d725af44c8a497e154016a authored over 11 years ago by Hannes Roest <[email protected]>
[TEST] add tests to pyOpenMS

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11173 6adb6e08-d915-0410-...

85e49d1e9d734484038c2d12134aac79be0b7f24 authored over 11 years ago by Hannes Roest <[email protected]>
[TEST] add tests to pyOpenMS

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11172 6adb6e08-d915-0410-...

99403073145a948c968a1adc5713ea13da9392c5 authored over 11 years ago by Hannes Roest <[email protected]>
[DOC] add some pyOpenMS documentation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11171 6adb6e08-d915-0410-...

b6dd30d0a2e78915d608fd0e7605504f1a77eb5e authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] wrap more classes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11170 6adb6e08-d915-0410-...

2a7ad4f22182cb35d8dcef9e5c0440a3cd5db0cb authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] wrap more classes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11169 6adb6e08-d915-0410-...

63ac8bed061db789c1ac48575851cd7d9def07ee authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] wrap next batch

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11168 6adb6e08-d915-0410-...

91201d266c66c3ee7c97b4761b665660325f1f5a authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] wrap more classes, second batch

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11167 6adb6e08-d915-0410-...

b743ce1563174abddea9002694176686f3ab7d1c authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] wrap more classes in pyOpenMS

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11166 6adb6e08-d915-0410-...

c55c65348fc29319f7a4adac98af81ec400ec192 authored over 11 years ago by Hannes Roest <[email protected]>
[BUILD] add ignore file for Python checker

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11165 6adb6e08-d915-0410-...

b644085a8a990a49ebbf625e9949bed3ebb2fb9e authored over 11 years ago by Hannes Roest <[email protected]>
[BUILD] add Python script to check the bindings

The script matches the functions in the Python wrappers with the C++
signatures of the correspon...

fc8aafeb7e9f869dc6d460f1813602b6d901edf9 authored over 11 years ago by Hannes Roest <[email protected]>
[NOP] fix for Doxygen

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11163 6adb6e08-d915-0410-...

a5003fdec4579203447ea94dbf2ccf380ffac1f4 authored over 11 years ago by Hannes Roest <[email protected]>
[BUGFIX] fix FeatureXMLFile_test

* delete copy constructor that was introduced in r10786 which fixes the
test.

OpenMSKernel ch...

6ec26ad27621118c32e4116e125fd9365b850b42 authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] add DocumentIdentifier to FeatureMap and ConsensusMap

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11161 6adb6e08-d915-0410-...

1f9a0317b47f704deafb80d30c54cbf2effa5f38 authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] add ExperimentalSettings with all methods

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11160 6adb6e08-d915-0410-...

dfe8f7ebefe97d725b65288a9fc8d0936c4f6cb5 authored over 11 years ago by Hannes Roest <[email protected]>
[FIX] added missing decl in ExeperimentalSetting.pxd

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11159 6adb6e08-d915-0410-...

68384cc57db11c13bcfbb24f8298fa16755d16f8 authored over 11 years ago by Hannes Roest <[email protected]>
[FIX] added some missing methods of MSExperiment

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11158 6adb6e08-d915-0410-...

ecb89ef0f23591649457564b40698d5bbecc98ec authored over 11 years ago by Hannes Roest <[email protected]>
[FIX] added missing methods for Param class

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11157 6adb6e08-d915-0410-...

6e552c763e11e9f19d5b799ae221ef6319c49cc1 authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] more dict like API in addons/Param.pyx

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11156 6adb6e08-d915-0410-...

eeb5db2291e04065060bd7c0a8a753a9a4c7a010 authored over 11 years ago by Hannes Roest <[email protected]>
[TEST] add forgotten test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11155 6adb6e08-d915-0410-...

a24bc7c435fa410d9ad5a22ca0a585f70e26137a authored over 11 years ago by Hannes Roest <[email protected]>
[FIX,BUILD] os.rename does not replace on Windows

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11154 6adb6e08-d915-0410-...

910eb935ea439a0bd35d9f49af02e513bcaaad40 authored over 11 years ago by Hannes Roest <[email protected]>
[FIX] space is not allowed here

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11153 6adb6e08-d915-0410-...

217da08d059a31eeeeb636538a0bb8e659e06b60 authored over 11 years ago by Hannes Roest <[email protected]>
[FIX,TEST] fix test (sort map for consistent output)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11152 6adb6e08-d915-0410-...

cc4a3d808d3e3e5b4d52e334cce003323059ec35 authored over 11 years ago by Hannes Roest <[email protected]>
[FEAURE] wrap SpectrumAccessOpenMSCached and ChromatogramAccess

OpenMSKernel change

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@1115...

28bb562466a37c88c1be7f839c15e60c2cd99296 authored over 11 years ago by Hannes Roest <[email protected]>
[FIX] pyOpenMS binary distribution now includes needed Qt4 DLLs

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11150 6adb6e08-d915-0410-...

6f27179ca096a08c0691a4e7df179e95e55d9fac authored over 11 years ago by Hannes Roest <[email protected]>
[BUILD,FIX] fix after revision 10953: re-add working dir for env.py

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11149 6adb6e08-d915-0410-...

b64a6df0e90ad82ae58faa8ccdef2046b5bcde18 authored over 11 years ago by Hannes Roest <[email protected]>
[TEST,FIX] fix memory leak test for other platforms: -1 does not work

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11148 6adb6e08-d915-0410-...

432f5c5df8b3c7aced1501fb501ce735874a17f4 authored over 11 years ago by Hannes Roest <[email protected]>
[BUILD] use absolute path to tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11147 6adb6e08-d915-0410-...

c6c123fcf69ba023dafb797c5b16ea5d53db6bff authored over 11 years ago by Hannes Roest <[email protected]>
[INTERNAL] use Size consistently for size_t

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11146 6adb6e08-d915-0410-...

5af273512c769c6438fe0a8b4bbc7cf6810faa0e authored over 11 years ago by Hannes Roest <[email protected]>
[BUILD,TEST] fix path to testing file in memory leak tests

fixes out-of-source-tree build problems

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot...

9ed1d0dc9cc849a113bb2d7bdce8a065340cc6d3 authored over 11 years ago by Hannes Roest <[email protected]>
[BUILD] make targets message dependent on whether pyopenms was configured or not

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11144 6adb6e08-d915-0410-...

04f09ef2647fb54ab55719e1eebcd67b75cad111 authored over 11 years ago by Hannes Roest <[email protected]>
[DOC] add to readme

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11143 6adb6e08-d915-0410-...

7c7542771cb0c36839b21f5029cbff94db6c5971 authored over 11 years ago by Hannes Roest <[email protected]>
[DOC] expand manual

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11142 6adb6e08-d915-0410-...

a3dfabe7c5db0fcc0d838a5925738f6df37a871f authored over 11 years ago by Hannes Roest <[email protected]>
[FIX] switch two files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11141 6adb6e08-d915-0410-...

14454053fea28c892405c8408cbc02b5e47272f0 authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] get Itraq working

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11140 6adb6e08-d915-0410-...

a2fd6e0142face22b8329a024ccd3e847e548c55 authored over 11 years ago by Hannes Roest <[email protected]>
[TEST] create separate ctest for each Python testfile (more granular testing)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11139 6adb6e08-d915-0410-...

dcfcd4d4d375f948a6d1ae19e313e0bca34b129d authored over 11 years ago by Hannes Roest <[email protected]>
[FIX,BUILD] fixed lnx lib-loading problem introduced in [10943]; removed LoadLibrary as it seems to be unnecessary for mac-osx

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11138 6adb6e08-d915-0410-...

9fbb4b12e79862a187ccaffd8501d2c41648a943 authored over 11 years ago by Hannes Roest <[email protected]>
[BUILD] added mac-osx support for pyOpenMS

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11137 6adb6e08-d915-0410-...

25c6c55a65ef41e2ba3ebead1324db50958bc6ce authored over 11 years ago by Hannes Roest <[email protected]>
[FIX] manual fix of Cython-Clang bug

- add a regex to the setup.py script that will fix the .cpp file

git-svn-id: https://open-ms.sv...

6ade0ddfcebd1aaf316b85ded5bd81c549921b9f authored over 11 years ago by Hannes Roest <[email protected]>
[DOC] manual

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11135 6adb6e08-d915-0410-...

6b4d7f9558143971e625bc8ccc252fbde20729ee authored over 11 years ago by Hannes Roest <[email protected]>
[FIX] mixup of two filters

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11134 6adb6e08-d915-0410-...

db4a3bfc81eac7a78c1a211c265d766cf12bab63 authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] get direct access to Chromatogram peaks

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11133 6adb6e08-d915-0410-...

9aaf7f230a6c8c9af018695e932fa3d378bc0633 authored over 11 years ago by Hannes Roest <[email protected]>
[DOC] Add manual for pyOpenMS

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11132 6adb6e08-d915-0410-...

5d4de96c4e2a02962c448e4e9d81d061bccfbac3 authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] added RichMSSpectrum

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11131 6adb6e08-d915-0410-...

a556f0a359f3c740ac760b7e50d3eed71af48399 authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] add 2 new classes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11130 6adb6e08-d915-0410-...

d2d31eb68ca1083e28b422882a5493d93e73fbf4 authored over 11 years ago by Hannes Roest <[email protected]>
[DOC] small fix

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11129 6adb6e08-d915-0410-...

93eb47430596e5a5c7cfafe9ce8617e5a4a66d6c authored over 11 years ago by Hannes Roest <[email protected]>
[DOC] document how to install with Python < 2.7

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11128 6adb6e08-d915-0410-...

16ac053fa8cd63cda30d9e8c1f3ad5a805251c2b authored over 11 years ago by Hannes Roest <[email protected]>
[FIX] also get the data back from IDRipper

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11127 6adb6e08-d915-0410-...

731686b90497a66ef2c18e16b915a6f133e19d7c authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] wrap some more classes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11126 6adb6e08-d915-0410-...

a6148dd22a0cca00d6b7763c014f71bd892e91bf authored over 11 years ago by Hannes Roest <[email protected]>
[DOC] update classes to wrap

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11125 6adb6e08-d915-0410-...

c6c875cf27cbb9cbe679c9344bae7ca0648a3ada authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] wrap more classes (167 total)

ModificationDefinitionsSet.pxd
SignalToNoiseEstimatorMedian.pxd
XTandemXMLFile.pxd

git-svn-id: ...

05917f051adbc1c51641ec4ed74d236bc8df128b authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] wrap more classes and add tests

DTA2DFile.pxd
DTAFile.pxd
EDTAFile.pxd
Identification.pxd
IdentificationHit.pxd
KroenikFile.pxd
...

ab37580f691dda54b86abafeb5dcc25eec7c1a0e authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] wrap more classes (153 total)

- add tests for the new classes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms...

4479d911d878f5072925aa439fe4bbc7fe832829 authored over 11 years ago by Hannes Roest <[email protected]>
[FIX] fixed broken test for SemanticValidator

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11121 6adb6e08-d915-0410-...

cdd4224e495b29a8a774e0b1d9ce804b884f3acf authored over 11 years ago by Hannes Roest <[email protected]>
[BUILDPROCESS] record qmake info in pyopenms/qt_version_info.py + autorap update

- On windows dll conflicts between a installed Qt (in this case v 4.10) and
the dll us...

7be93458760089743b1aceb3416ce8475f65482c authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] wrap some more classes

- CVMappingFile
- CVMappings
- ControlledVocabulary
- EnzymaticDigestion
- IDDecoyProbability
- ...

0e5c2deea2b1fe8ca179a8b109a88bf8763da5cd authored over 11 years ago by Hannes Roest <[email protected]>
[TEST] also test RT/MZ in SILAC analyzer

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11118 6adb6e08-d915-0410-...

aec6fb1a41071bc6ed26060580f509889b172969 authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] wrap 2 more classes

- [FEATURE] wrap InternalCalibration
- [FEATURE] wrap TransitionTSVReader
- [NOP] update classes...

7016cd0c43490041d8673a58e5211b0f09f198c7 authored over 11 years ago by Hannes Roest <[email protected]>
[TEST,FIX] add tests, fix copy constructor for MSExperiment

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11116 6adb6e08-d915-0410-...

87126178477938746cad98d873cf9dd3a6b8aff5 authored over 11 years ago by Hannes Roest <[email protected]>
[FIX] enabled IDRipper as autowrap bug is fixed

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11115 6adb6e08-d915-0410-...

6abbfa73fd5b7b80aa102ad5819d1db332a3c512 authored over 11 years ago by Hannes Roest <[email protected]>
added type converter for DPosition2 and libcpp_vector[DPosition2]

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11114 6adb6e08-d915-0410-...

1505880be6c23990401c0477b55b13ad244d7b1e authored over 11 years ago by Hannes Roest <[email protected]>
[FIX] disable IDRipper due to a bug

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11113 6adb6e08-d915-0410-...

7b570f6d6778801df39d5ef23e11904afa9169ae authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] wrap IDRipper and IDFilter

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11112 6adb6e08-d915-0410-...

1ca30bedbac8785d4082b91a0484df034a958ab2 authored over 11 years ago by Hannes Roest <[email protected]>
[INTERNAL] add Python file to compile cython to C++ directly

- remove old comment

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@111...

98f54b82a6275599edaba2d7295d6d6c18268e22 authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] add pyTOPP tool for SILAC Analyzer

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11110 6adb6e08-d915-0410-...

4336f1bc3ba6f4484a951a4237ab8c4b42767a1e authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] wrap SILACAnalyzer

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11109 6adb6e08-d915-0410-...

0c892cb72569b50d5cedca4dd1b9df6e1b7444b2 authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] SILAC-move: added ProgressLogging and master controller

OpenMSKernel changed

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@111...

15663c035edc06b8dd8b688622920c8ce3124c96 authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] SILAC-move: Refactor parameter handling in the SILAC Analyzer

OpenMSKernel changed

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@111...

6206c0f48592535ccead7abda8b70dfdc72144bb authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] SILAC-move: delete old code in the TOPPTool

OpenMSKernel changed

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@111...

972ba5318acfc1800dbeb91b4e24eee3b3a63b91 authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] SILAC-move: Switch TOPPTool to library functions

OpenMSKernel changed

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@111...

a7af2467aaf8ed07dc5063af1f9e4c01bfed1787 authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] SILAC-move: refactor SILACAnalyzer TOPPTool, remove global variables

OpenMSKernel changed

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@111...

1e59cab1f0e694e3507fe4b364535a6eb0b18550 authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] SILAC-move: move code from SILACAnalyzer into OpenMS library

OpenMSKernel changed

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@111...

2e7fd5a03b310222a41b8de8b28565443abf7543 authored over 11 years ago by Hannes Roest <[email protected]>
cleanup OpenSwathFeatureXMLToTSV.py

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11102 6adb6e08-d915-0410-...

ea5bb42e9403ac82ac8a5a248499319410a12e67 authored over 11 years ago by Hannes Roest <[email protected]>
lots of cleanup

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11101 6adb6e08-d915-0410-...

d2001a3337cc2e2b891088b9e61758120a8d6cf1 authored over 11 years ago by Hannes Roest <[email protected]>
fixed regression error in test_BaselineFiltering.py

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11100 6adb6e08-d915-0410-...

f8210a0fe1214c96261b43e0eb5cdb53bfe4456f authored over 11 years ago by Hannes Roest <[email protected]>
added script for running integration test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11099 6adb6e08-d915-0410-...

60d92c632995a562a9c44ebd9a3dce9e4e696cf0 authored over 11 years ago by Hannes Roest <[email protected]>
[DOC] describe which classes we want / still need to wrap

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11098 6adb6e08-d915-0410-...

93b2a5e699586a3063d1e09fed491626fe67eb11 authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] wrap several new classes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11097 6adb6e08-d915-0410-...

7f9fb6a7719d423318350bdae5480200fedc31ab authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] FeatureFinder wrapped

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11096 6adb6e08-d915-0410-...

fd061ef0656a3299ab5990f05c9e3daaf15154e2 authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] MorphologicalFilter wrapped

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11095 6adb6e08-d915-0410-...

b7d180797e43189ff4c8fb77a81a788b4a2fcefa authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] data smoothing

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11094 6adb6e08-d915-0410-...

c33c09b25ff85d72b43011196f4571aeb3fd8031 authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] wrap Confidence Scoring wrapper

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11093 6adb6e08-d915-0410-...

5a2c9ce2dd01cf44fc8ec31a26499ba10ee2004d authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] wrap MRMFeature and MRMTransitionGroup

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11092 6adb6e08-d915-0410-...

a7ff7e2d33378df7af936d2a91ebe42002bc4343 authored over 11 years ago by Hannes Roest <[email protected]>
[TEST] add ChromatogramExtraction test

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11091 6adb6e08-d915-0410-...

8fd2b4565e090de6709e47f7526ffd86e7ff50b8 authored over 11 years ago by Hannes Roest <[email protected]>
[TEST] add unittest for SpectrumAccess

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11090 6adb6e08-d915-0410-...

b0e89900842c2c9a94f735130e879d9cefbf846c authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] wrap SpectrumAccessOpenMS

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11089 6adb6e08-d915-0410-...

c018046960c5d8566f6e3bea6bdc2ba961aae549 authored over 11 years ago by Hannes Roest <[email protected]>
auto conversion of DataValue to/from python types

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11088 6adb6e08-d915-0410-...

87f18076bb731cd51ae4a0cfc8c58e870c772a63 authored over 11 years ago by Hannes Roest <[email protected]>
[NOP] add reminder to check addons

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11087 6adb6e08-d915-0410-...

8df4e936afb7a4f03529e8ad9cbabbbc90f295ab authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] update pyTOPP tools

- add FeatureXMLToTSV
- refactor to allow access to the algorithm

git-svn-id: https://open-ms.s...

37064c2dc9864dffed4bfde0dc18c83b06d80749 authored over 11 years ago by Hannes Roest <[email protected]>
[FEATURE] update pxd files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11085 6adb6e08-d915-0410-...

03eb95934baa899daed07c6a77cb82543a669bd0 authored over 11 years ago by Hannes Roest <[email protected]>