Ecosyste.ms: OpenCollective
An open API service for software projects hosted on Open Collective.
github.com/OpenMS/OpenMS
The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS
- peaks below the minimal width are not reported upon
git-svn-id: https://open-ms.svn.sourcefor...
65a5009db3636474736fff1e6596f4e7927c6675 authored over 11 years ago by Hannes Roest <[email protected]>- extract the MRM PeakPicker and leave as standalone class
git-svn-id: https://open-ms.svn.sour...
0f6fe6132dc22e1add6fdf35f51713c8c85bcbc2 authored over 11 years ago by Hannes Roest <[email protected]>
- add removeOverlappingPeaks_ which checks for overlapping peaks and
corrects them
- allow adj...
- remove ITransitionGroup from FeatureFinder (not necessary any more)
and all other classes us...
Rework how the scoring is done:
- Use simple struct to hold scoring
- Create class SwathScorer ...
- we have not tested using a trafoXML file so far, do this before
refactoring
git-svn-id: htt...
69bd6168a2d315742602ddba5f7b9a4e8ca34edb authored over 11 years ago by Hannes Roest <[email protected]>
- rename methods in scoring
- add documentation
- add new functions for RootMeanSquareDeviation ...
git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11493 6adb6e08-d915-0410-...
205d807f5d71db1c9fbc9ffd7490a05c8ba3a79d authored over 11 years ago by Hannes Roest <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11492 6adb6...
53048d70f5e374479feb49c92db0424b5cf764a4 authored over 11 years ago by Stephan Aiche <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11491 6adb...
8f18fe58e5b3070dcba7d56de343bc0a65d81657 authored over 11 years ago by Stephan Aiche <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11489 6adb6e08-d915-0410-...
c82df1f84571ed7bc9f482a53f02d8a60f63ea8a authored over 11 years ago by Christian <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11486 6adb6...
a580282cb0f21d32e158fbc023ff226d1c5d2bfa authored over 11 years ago by Stephan Aiche <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11485 6adb6...
469cd74382b085707e9f696ca2a241489dc8a8a9 authored over 11 years ago by Erhan Kenar <[email protected]>
- user can now specify dirctly whether a featureXML or consensusXML
should be written (fixes r...
- throw correct exceptions in the code if mapping was not successful
- test that the correct exc...
git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11482 6adb6...
55feb98fc35627b5b82fab54dee08fb200d667f6 authored over 11 years ago by Stephan Aiche <[email protected]>* some missing/fixing tests for VersionInfo, EnzymaticDigestion, FeatureXMLFile
git-svn-id: htt...
169915dbb2e240b9b9e8f36a8bdae0d983cb9ce8 authored over 11 years ago by Chris Bielow <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11479 6adb6...
96ad18a96648fe5757d62d54d2e371d16443a379 authored over 11 years ago by Timo Sachsenberg <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11478 6adb6...
0cf4571ba18df7ddf283a72d8b33f80b84db245c authored over 11 years ago by Timo Sachsenberg <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11477 6adb6...
9e1d8fbf79b9c977e3a1c057ddcf2aabb3f8b4c3 authored over 11 years ago by Hannes Roest <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11476 6adb6...
c40b7549c86eeb877295fb87724b9ee8172d2ca8 authored over 11 years ago by Hendrik Weisser <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11475 6adb6...
2cfaf2693a9c7f09ce05d1d6bf79bd0e98c9c6e9 authored over 11 years ago by Hendrik Weisser <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11474 6adb6...
d4434e7a4fe9f9330c0c59234e43f2c529db8b59 authored over 11 years ago by Hendrik Weisser <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11472 6adb...
735aeca5f502fe7e950a2a478aa5b8b1e6d998e4 authored over 11 years ago by Stephan Aiche <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11471 6adb6e08-d915-0410-...
ab42ca5bee7c7e207078f00075389c7b4d3353aa authored over 11 years ago by Chris Bielow <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11470 6adb6e08-d915-0410-...
6735f066f7e7c9cbcd580bda5d8f2c4b90fb965d authored over 11 years ago by Hendrik Weisser <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11469 6adb6e08-d915-0410-...
f1c61a4c469970d0bffffedf0d601608f08da0e8 authored over 11 years ago by Mathias Walzer <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11468 6adb6e08-d915-0410-...
538bab3270f2e0eb6086e824bd1864196494750a authored over 11 years ago by Mathias Walzer <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11467 6adb6e08-d915-0410-...
c7749f17df94d49e01fb1ccc0dffb6ed22353248 authored over 11 years ago by Hendrik Weisser <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11466 6adb6e08-d915-0410-...
e406498660268f277961ef9818719ea2af2b1db0 authored over 11 years ago by Hendrik Weisser <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11465 6adb6e08-d915-0410-...
40ce5d51ded442ef484142a236c81492e778daa0 authored over 11 years ago by Erhan Kenar <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11464 6adb6e08-d915-0410-...
eb29e5a145156865f8e1f0e6f5c20b399805b1d8 authored over 11 years ago by Erhan Kenar <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11463 6adb6e08-d915-0410-...
bda642b5773fd3ec62242db4bfdfe1bb69a2809b authored over 11 years ago by Mathias Walzer <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11462 6adb6e08-d915-0410-...
4fa59255383ec1c104eef3fa5630a7552f1e67f0 authored over 11 years ago by Chris Bielow <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11459 6adb6e08-d915-0410-...
4e09101ef6f66e6738e8b8faee5cf6c9552bae9a authored over 11 years ago by Hannes Roest <[email protected]>
- updated copyright/license header to 2013
- consistent maintainers
- guards
git-svn-id: https:...
559177518a3293b5401f12cbe40a6ea01134a6fd authored over 11 years ago by Hannes Roest <[email protected]>
Do not load the reference map twice but store the important information
temporary and later add ...
significant speedup of 5x to 8x was observed by implementing
- a lookup table which contains th...
880edcfb387348deb1c43fe5e385d2d0431c3bbc authored over 11 years ago by Hannes Roest <[email protected]>the clustering shows performance benefits with this change:
- instead of sorting the list each ...
3c206076375ffeebc544fb9ffc7522e7b4f2c9ba authored over 11 years ago by Hannes Roest <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11453 6adb6e08-d915-0410-...
12f6711ae80018c0719241a9022eb84a2b4f2b03 authored over 11 years ago by Hannes Roest <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11452 6adb6e08-d915-0410-...
05ce4953ba1f565b8f958d28b30676804d2dc896 authored over 11 years ago by Erhan Kenar <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11451 6adb6e08-d915-0410-...
89be6f74c37424009957d93d214074c0be8cee85 authored over 11 years ago by Erhan Kenar <[email protected]>
- replace all tabs with spaces
- add space between if/for and bracket
git-svn-id: https://open-...
5641425d8be9eebb21328e98a0ac4d53fe56de89 authored over 11 years ago by Hannes Roest <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11449 6adb6e08-d915-0410-...
980e65f1c4ceca8de3a49f90e2976f8ff85edb38 authored over 11 years ago by Hendrik Weisser <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11448 6adb6e08-d915-0410-...
1cbbc62ecbf11f41885569f27224da970e064358 authored over 11 years ago by Hendrik Weisser <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11447 6adb6e08-d915-0410-...
35abbe5068af3cefb20eacc462053d1e102192ab authored over 11 years ago by Stephan Aiche <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11446 6adb6e08-d915-0410-...
da64c12328276b66acac0e09f6beffd47d7e7e7c authored over 11 years ago by Hendrik Weisser <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11444 6adb6e08-d915-0410-...
2c74153ea6b35404af6dc25af6d577b8b18bf4f6 authored over 11 years ago by Hannes Roest <[email protected]>
- allow inheritance
- const-correctness for writeSpectrum_
git-svn-id: https://open-ms.svn.sour...
4b75c137e930dd2ee7eef971324a941f662bd961 authored over 11 years ago by Hannes Roest <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11440 6adb6e08-d915-0410-...
7227c22f24054b27ab4c37fdb38d212cc2a19723 authored over 11 years ago by Hannes Roest <[email protected]>
- The user can now specify in which vector he wants to reserve space
- calling reserve() on the ...
apply the same improvements made to MapAlignerPoseClustering in r9805
also to FeatureLinkerUnlab...
git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11437 6adb6e08-d915-0410-...
7fac3ae762eb77c865aef939ff2dd4759a0d4d55 authored over 11 years ago by Stephan Aiche <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11436 6adb6e08-d915-0410-...
7e345aae34e05f1ce5b4458801d62775bb7e7360 authored over 11 years ago by Hendrik Weisser <[email protected]>patch breaks build on all test machines
git-svn-id: https://open-ms.svn.sourceforge.net/svnroot...
d68aebb267d0bba6e4f1bca58ebff5ccd39fdc30 authored over 11 years ago by Hannes Roest <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11434 6adb6e08-d915-0410-...
acddcdf211225c6c230c8e5cb400549ccd73906f authored over 11 years ago by Hendrik Weisser <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11433 6adb6e08-d915-0410-...
4aa78cd6163303943222cd9e7e03e923fa3d4838 authored over 11 years ago by Erhan Kenar <[email protected]>
* TOPPView now uses the File::findExecutable method to find the correct TOPP executable
* QPr...
- remove old licence from ./source
git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open...
c27e73dd2b7166d9377eb0ebbed597f1087ea0e7 authored over 11 years ago by Hannes Roest <[email protected]>- since it is a templated function, it should reside in the header file
git-svn-id: https://ope...
517c3874d429225cd673f3877f89fb959f6bb73f authored over 11 years ago by Hannes Roest <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11429 6adb6e08-d915-0410-...
13bd283aab1c505f61a80eb3ce32aec34acf7d39 authored over 11 years ago by Hannes Roest <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11428 6adb6e08-d915-0410-...
a6e809681e6a1ba8aac0038d239f736e23a78975 authored over 11 years ago by Hannes Roest <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11427 6adb6e08-d915-0410-...
707b0530f21e9e4ff6e67691e2bfa22b73e25079 authored over 11 years ago by Hannes Roest <[email protected]>The slot must be created before the start method is called. used to be after.
git-svn-id: http...
9e1f8fde62b2f4accd23f02a8325b1c7e2f03f36 authored over 11 years ago by Christian <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11425 6adb6e08-d915-0410-...
52ce6f30feee56acb9cf476bc18229b717e58c10 authored over 11 years ago by Stephan Aiche <[email protected]>
- Remove call to getSpectra() since this code does not really need to
access a full spectrum l...
- currently some tests trigger this exception -> we first need to
investigate the root cause o...
git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11422 6adb6e08-d915-0410-...
a431ee6a3808f35c20de42f9e0567b4f205c2608 authored over 11 years ago by Chris Bielow <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11421 6adb6e08-d915-0410-...
0dec54a50bd4ba16570e0f5f392f02d33edcee3f authored over 11 years ago by Stephan Aiche <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11420 6adb6e08-d915-0410-...
b31db7535ec8057a5f69c7f2ceb7ca12f3f032c1 authored over 11 years ago by Stephan Aiche <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11419 6adb6e08-d915-0410-...
62de8e1d77761897e58f9750f216e5c3e92542c6 authored over 11 years ago by Hendrik Weisser <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11418 6adb6e08-d915-0410-...
f24b52f3c24cea7cd877eb9ee05c4af733642839 authored over 11 years ago by Stephan Aiche <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11417 6adb6e08-d915-0410-...
b2fd1752f0465172479d8d5e26aa637c010bf3c6 authored over 11 years ago by Hendrik Weisser <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11416 6adb6e08-d915-0410-...
cd66cba00b2f4c321355cefc1157aced985284b9 authored over 11 years ago by Stephan Aiche <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11415 6adb6e08-d915-0410-...
f951cccc633c073659657a8d762eca29939be035 authored over 11 years ago by Hendrik Weisser <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11414 6adb6e08-d915-0410-...
457edc89ac868f4c520f9b6fbd5ed31ccd9bda33 authored over 11 years ago by Chris Bielow <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11413 6adb6e08-d915-0410-...
141e54803ab0d0595b759de3a0a94c73fe67e57d authored over 11 years ago by Stephan Aiche <[email protected]>
* adapted test files to SHA1 hashes
* uncrustified FileHandler/SourceFile
* made myself maint...
* uncrustified PeackPickerRapid.(h|C) to ensure compliance with style guide
git-svn-id: https:...
62a05b5f8fb16f9d974e5782025497e1dc159bf1 authored over 11 years ago by Stephan Aiche <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11410 6adb6e08-d915-0410-...
dbd4b4d8bc3a1bc6e5325bba5fd8ee472645b596 authored over 11 years ago by Stephan Aiche <[email protected]>
pyOpenMS cannot handle inherited and overloaded functions, thus it is
easer to not have an overl...
- also fix pyOpenMS with the new WindowMower
git-svn-id: https://open-ms.svn.sourceforge.net/sv...
be4e6354af9649976c16232fbe2b0d4c6c46686f authored over 11 years ago by Hannes Roest <[email protected]>
- remove front() -> replace with begin()
- remove insert / erase
git-svn-id: https://open-ms.sv...
c6c056ff3a17055f62b8c5cb7fa0b9c5be463241 authored over 11 years ago by Hannes Roest <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11406 6adb6e08-d915-0410-...
3a35c27d96d0342bf078b8a6526b9db778d6a0af authored over 11 years ago by Hannes Roest <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11405 6adb6e08-d915-0410-...
50a2f9d0f704643528bd91e50efcc507f79c19f2 authored over 11 years ago by Hannes Roest <[email protected]>
- remove unused insert
- replace rbegin with back()
git-svn-id: https://open-ms.svn.sourceforge...
4045d406ef7387c820d94de438087d441fed9b58 authored over 11 years ago by Hannes Roest <[email protected]>
- Replace public with private inheritance
- Expose full interface of std::vector through "using"...
git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11402 6adb6e08-d915-0410-...
43df9731bb2dea54301fb0ca7352eaa60366ddcc authored over 11 years ago by Chris Bielow <[email protected]>Upon loading a file, this very file is listed as source file, thus writing it out again will prod...
e35630dc9fa7bd1002216b0fa3ed659dd89a6d26 authored over 11 years ago by Chris Bielow <[email protected]>however, this might now produce an exception during storing, when the consensuXML file is just ch...
79ee9dea9aac263ff229306836564d3ca896b08f authored over 11 years ago by Chris Bielow <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11399 6adb6e08-d915-0410-...
208c8271e902c40c2a1d61148406523825f6553c authored over 11 years ago by Chris Bielow <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11398 6adb6e08-d915-0410-...
457aa5bc0f83cf4f8b54ffebb4da72c1ee0287bd authored over 11 years ago by Chris Bielow <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11397 6adb6e08-d915-0410-...
ce5177ab2cf616e479b41aab780050b0d0bd9d07 authored over 11 years ago by Timo Sachsenberg <[email protected]>
* restructured the build system of the code examples
* added tests for all non-GUI examples
...
ae6d90bc6bf4ea8c2d86c9ec5ace2f65befa96a7 authored over 11 years ago by Stephan Aiche <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11395 6adb6e08-d915-0410-...
4afdab8ae72c629954a2f1e5a0ae67ae2024ff1f authored over 11 years ago by Timo Sachsenberg <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11394 6adb6e08-d915-0410-...
a467a7571261a099a546b4e73a652f892f3e9971 authored over 11 years ago by Timo Sachsenberg <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11393 6adb6e08-d915-0410-...
6debf26ac1a2b12962d683116947accd7b50fa7d authored over 11 years ago by Erhan Kenar <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11392 6adb6e08-d915-0410-...
4ed17d3adbdeb13494f41db09bc46f5e5e1c69a8 authored over 11 years ago by Timo Sachsenberg <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11391 6adb6e08-d915-0410-...
3658ae0e1777376615ef450c1a23261fbcba6a2d authored over 11 years ago by Stephan Aiche <[email protected]>git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11390 6adb6e08-d915-0410-...
c9b8b4eed5086e10b95e5e7fc4efa35b73ab1d0d authored over 11 years ago by Hannes Roest <[email protected]>